| | gene | name | fitness | t score | description | |
|---|
| b2741 | rpoS | +4.4 | 36.5 | RNA polymerase sigma factor (NCBI) | compare |
| b2903 | gcvP | +3.7 | 32.5 | glycine dehydrogenase (NCBI) | compare |
| b2904 | gcvH | +3.7 | 24.3 | glycine cleavage system protein H (NCBI) | compare |
| b2808 | gcvA | +3.3 | 20.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2905 | gcvT | +3.2 | 19.7 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2951 | yggS | +2.5 | 16.8 | predicted enzyme (NCBI) | compare |
| b1095 | fabF | +2.2 | 18.6 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1190 | dadX | +1.9 | 10.2 | alanine racemase (NCBI) | compare |
| b3164 | pnp | +1.8 | 7.4 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1085 | b1085 | +1.7 | 4.8 | orf, hypothetical protein (VIMSS) | compare |
| b1422 | ydcI | +1.6 | 9.7 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1831 | proQ | +1.6 | 5.0 | putative solute/DNA competence effector (NCBI) | compare |
| b2688 | gshA | +1.6 | 11.2 | glutamate--cysteine ligase (NCBI) | compare |
| b0059 | hepA | +1.5 | 14.0 | ATP-dependent helicase HepA (NCBI) | compare |
| b3341 | rpsG | +1.5 | 2.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b4203 | rplI | +1.4 | 6.3 | 50S ribosomal protein L9 (NCBI) | compare |
| b2947 | gshB | +1.3 | 8.7 | glutathione synthetase (NCBI) | compare |
| b2829 | ptsP | +1.3 | 11.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1429 | tehA | +1.3 | 2.7 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0882 | clpA | +1.2 | 10.5 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b4172 | hfq | +1.2 | 1.8 | RNA-binding protein Hfq (NCBI) | compare |
| b4071 | nrfB | +1.1 | 1.9 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1236 | galU | +1.1 | 6.6 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1294 | sapA | +1.1 | 6.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1217 | chaB | +1.1 | 2.5 | cation transport regulator (NCBI) | compare |
| b2937 | speB | +1.1 | 6.7 | agmatinase (NCBI) | compare |
| b4000 | hupA | +1.0 | 6.0 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b1855 | lpxM | +1.0 | 5.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1191 | b1191 | +1.0 | 6.3 | orf, hypothetical protein (VIMSS) | compare |
| b0232 | yafN | +1.0 | 0.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1583 | ynfB | +1.0 | 3.1 | hypothetical protein (NCBI) | compare |
| b3842 | rfaH | +1.0 | 5.9 | transcriptional activator RfaH (NCBI) | compare |
| b1438 | ydcQ | +1.0 | 3.9 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1299 | puuR | +0.9 | 3.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4030 | yjbA | +0.9 | 5.6 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b3929 | rraA | +0.9 | 6.9 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b0955 | ycbZ | +0.9 | 6.1 | predicted peptidase (NCBI) | compare |
| b1725 | yniA | +0.9 | 2.4 | predicted phosphotransferase/kinase (NCBI) | compare |
| b0082 | mraW | +0.9 | 3.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3977 | tyrU | +0.9 | 1.5 | tRNA-Tyr (NCBI) | compare |
| b1824 | yobF | +0.8 | 2.6 | hypothetical protein (NCBI) | compare |
| b3753 | rbsR | +0.8 | 7.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2376 | ypdI | +0.8 | 3.6 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b4171 | miaA | +0.8 | 3.6 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0960 | b0960 | +0.8 | 6.5 | orf, hypothetical protein (VIMSS) | compare |
| b4438 | cyaR | +0.8 | 2.3 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b1333 | uspE | +0.8 | 4.9 | stress-induced protein (NCBI) | compare |
| b3778 | rep | +0.8 | 5.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3752 | rbsK | +0.8 | 6.2 | ribokinase (NCBI) | compare |
| b4066 | yjcF | +0.8 | 0.8 | hypothetical protein (NCBI) | compare |
| b3454 | livF | +0.7 | 2.6 | ATP-binding component of leucine transport (VIMSS) | compare |
| b0503 | ybbB | +0.7 | 1.7 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b0685 | ybfE | +0.7 | 3.9 | orf, hypothetical protein (VIMSS) | compare |
| b3181 | greA | +0.7 | 5.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b0610 | rnk | +0.7 | 2.8 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b1171 | b1171 | +0.7 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3632 | rfaQ | +0.7 | 6.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2199 | ccmC | +0.7 | 1.8 | heme exporter subunit (NCBI) | compare |
| b3780 | rhlB | +0.7 | 5.7 | ATP-dependent RNA helicase (NCBI) | compare |
| b4293 | fecI | +0.7 | 2.2 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b4598 | yncL | +0.7 | 2.3 | hypothetical protein (RefSeq) | compare |
| b3644 | yicC | +0.7 | 4.5 | hypothetical protein (NCBI) | compare |
| b1222 | narX | +0.7 | 3.7 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3630 | rfaP | +0.7 | 5.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2171 | yeiP | +0.7 | 4.4 | putative elongation factor (VIMSS) | compare |
| b1279 | yciS | +0.7 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b2579 | yfiD | +0.6 | 1.5 | pyruvate formate lyase subunit (NCBI) | compare |
| b1090 | plsX | +0.6 | 3.7 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b2229 | b2229 | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0852 | rimK | +0.6 | 2.7 | ribosomal protein S6 modification protein (NCBI) | compare |
| b4445 | omrB | +0.6 | 2.9 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b4450 | arcZ | +0.6 | 3.0 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3138 | agaB | +0.6 | 2.6 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b3928 | yiiU | +0.6 | 3.4 | hypothetical protein (NCBI) | compare |
| b2123 | yehR | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1822 | rrmA | +0.6 | 1.6 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b4651 | yibW | +0.6 | 0.6 | no description | compare |
| b1273 | yciN | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b0605 | ahpC | +0.6 | 3.4 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b2521 | sseA | +0.6 | 4.0 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b1651 | gloA | +0.6 | 2.7 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b4097 | phnK | +0.6 | 1.7 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b0381 | ddlA | +0.6 | 3.8 | D-alanylalanine synthetase (NCBI) | compare |
| b3146 | yraL | +0.6 | 3.8 | predicted methyltransferase (NCBI) | compare |
| b2012 | yeeD | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b3457 | livH | +0.6 | 4.3 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b3194 | yrbE | +0.6 | 3.4 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1634 | tppB | +0.6 | 3.3 | putative tripeptide transporter permease (NCBI) | compare |
| b1823 | cspC | +0.6 | 1.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b3706 | trmE | +0.6 | 2.5 | tRNA modification GTPase (NCBI) | compare |
| b1916 | sdiA | +0.6 | 3.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b3523 | yhjE | +0.6 | 4.4 | predicted transporter (NCBI) | compare |
| b0630 | lipB | +0.6 | 1.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b0364 | yaiS | +0.6 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4570 | lomR | +0.6 | 1.8 | no description | compare |
| b3670 | ilvN | +0.6 | 3.1 | acetolactate synthase small subunit (NCBI) | compare |
| b3672 | ivbL | +0.5 | 0.7 | ilvB operon leader peptide (NCBI) | compare |
| b4461 | yfjD | +0.5 | 4.3 | predicted inner membrane protein (RefSeq) | compare |
| b1731 | cedA | +0.5 | 1.9 | cell division modulator (RefSeq) | compare |
| b1189 | dadA | +0.5 | 3.7 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b2830 | nudH | +0.5 | 1.1 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2006 | yeeW | +0.5 | 2.4 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b3740 | gidB | +0.5 | 4.3 | glucose-inhibited division protein B (NCBI) | compare |
| b1350 | recE | +0.5 | 2.8 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b4260 | pepA | +0.5 | 4.1 | leucyl aminopeptidase (NCBI) | compare |
| b4701 | sokX | +0.5 | 0.6 | sok-related sRNA, function unknown (RefSeq) | compare |
| b2576 | srmB | +0.5 | 2.4 | ATP-dependent RNA helicase (NCBI) | compare |
| b4391 | yjjK | +0.5 | 3.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2910 | zapA | +0.5 | 3.3 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1070 | flgN | +0.5 | 1.1 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4675 | yoaJ | +0.5 | 1.7 | expressed protein (RefSeq) | compare |
| b0550 | rusA | +0.5 | 1.7 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b2538 | hcaE | +0.5 | 2.0 | 3-phenylpropionate dioxygenase, large (alpha) subunit (NCBI) | compare |
| b2165 | yeiN | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b3468 | yhhN | +0.5 | 3.8 | conserved inner membrane protein (NCBI) | compare |
| b4255 | yjgD | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b3911 | cpxA | +0.5 | 3.9 | two-component sensor protein (NCBI) | compare |
| b1540 | ydfH | +0.5 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3206 | npr | +0.5 | 3.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3346 | yheO | +0.5 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b3102 | yqjG | +0.5 | 1.5 | predicted S-transferase (NCBI) | compare |
| b1040 | csgD | +0.5 | 1.3 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b4174 | hflK | +0.5 | 3.7 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2954 | yggV | +0.5 | 0.9 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b2474 | ypfI | +0.5 | 3.3 | predicted hydrolase (NCBI) | compare |
| b0968 | yccX | +0.5 | 2.1 | predicted acylphosphatase (NCBI) | compare |
| b2889 | idi | +0.5 | 2.6 | isopentenyl-diphosphate delta-isomerase (NCBI) | compare |
| b1255 | yciC | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b2303 | folX | +0.5 | 3.2 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b3616 | tdh | +0.5 | 2.9 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b2944 | sprT | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b4435 | isrC | +0.5 | 1.5 | unknown RNA (NCBI) | compare |
| b1379 | hslJ | +0.5 | 3.0 | heat-inducible protein (NCBI) | compare |
| b2114 | metG | +0.5 | 1.5 | methionyl-tRNA synthetase (NCBI) | compare |
| b1640 | ydhH | +0.5 | 2.6 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b1952 | dsrB | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1627 | rsxA | +0.5 | 2.0 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2742 | nlpD | +0.5 | 3.1 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4135 | yjdC | +0.5 | 3.6 | orf, hypothetical protein (VIMSS) | compare |
| b4110 | yjcZ | +0.5 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b4522 | yciX_1 | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b3631 | rfaG | +0.5 | 3.9 | glucosyltransferase I (NCBI) | compare |
| b2643 | yfjX | +0.5 | 0.8 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b0178 | hlpA | +0.5 | 2.0 | periplasmic chaperone (NCBI) | compare |
| b1606 | folM | +0.5 | 3.0 | short chain dehydrogenase (NCBI) | compare |
| b2421 | cysM | +0.4 | 1.8 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1593 | b1593 | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3095 | yqjA | +0.4 | 3.3 | conserved inner membrane protein (NCBI) | compare |
| b0627 | tatE | +0.4 | 1.7 | twin arginine translocase protein E (NCBI) | compare |
| b3455 | livG | +0.4 | 2.6 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b1329 | b1329 | +0.4 | 3.3 | putative transport periplasmic protein (VIMSS) | compare |
| b4515 | ybgT | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b0998 | torD | +0.4 | 0.9 | chaperone protein TorD (NCBI) | compare |
| b3999 | yjaG | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1341 | b1341 | +0.4 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4175 | hflC | +0.4 | 3.2 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b0382 | yaiB | +0.4 | 2.9 | hypothetical protein (NCBI) | compare |
| b2506 | yfgI | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b0778 | bioD | +0.4 | 1.9 | dethiobiotin synthetase (NCBI) | compare |
| b0851 | nfsA | +0.4 | 0.7 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b1743 | spy | +0.4 | 0.8 | envelope stress induced periplasmic protein (NCBI) | compare |
| b3741 | gidA | +0.4 | 2.1 | glucose-inhibited division protein A (NCBI) | compare |
| b3867 | hemN | +0.4 | 3.5 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b1390 | paaC | +0.4 | 2.2 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b1950 | fliR | +0.4 | 1.5 | flagellar biosynthesis protein R (NCBI) | compare |
| b3229 | sspA | +0.4 | 1.6 | stringent starvation protein A (NCBI) | compare |
| b1753 | ynjA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b0488 | ybbJ | +0.4 | 2.3 | conserved inner membrane protein (RefSeq) | compare |
| b1187 | fadR | +0.4 | 2.3 | fatty acid metabolism regulator (NCBI) | compare |
| b2644 | yfjY | +0.4 | 0.9 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b0831 | yliC | +0.4 | 2.2 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1073 | flgB | +0.4 | 2.5 | flagellar basal-body rod protein B (NCBI) | compare |
| b2052 | fcl | +0.4 | 2.6 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b3484 | yhhI | +0.4 | 1.1 | predicted transposase (NCBI) | compare |
| b4504 | ykfH | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b1041 | csgB | +0.4 | 2.1 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b1874 | cutC | +0.4 | 1.7 | copper homeostasis protein (NCBI) | compare |
| b0238 | gpt | +0.4 | 1.6 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b4041 | plsB | +0.4 | 1.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b3934 | cytR | +0.4 | 3.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2665 | ygaU | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b4373 | rimI | +0.4 | 1.2 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1141 | ymfG | +0.4 | 1.2 | e14 prophage; predicted excisionase (NCBI) | compare |
| b0783 | moaC | +0.4 | 2.1 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b0881 | clpS | +0.4 | 1.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b2637 | yfjT | +0.4 | 1.3 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b3460 | livJ | +0.4 | 3.0 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b0240 | crl | +0.4 | 2.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0389 | yaiA | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b1515 | lsrD | +0.4 | 1.6 | AI2 transporter (NCBI) | compare |
| b1462 | b1462 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1920 | fliY | +0.4 | 1.0 | cystine transporter subunit (NCBI) | compare |
| b1604 | ydgH | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1335 | ogt | +0.4 | 2.1 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b1842 | holE | +0.4 | 0.7 | DNA polymerase III, theta subunit (NCBI) | compare |
| b2572 | rseA | +0.4 | 1.5 | anti-sigma factor (NCBI) | compare |
| b2175 | spr | +0.4 | 1.7 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0658 | ybeX | +0.4 | 1.0 | predicteed ion transport (NCBI) | compare |
| b2919 | ygfG | +0.4 | 1.6 | putative enzyme (VIMSS) | compare |
| b1110 | ycfJ | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |