| | gene | name | fitness | t score | description | |
|---|
| b4552 | yrhC | +1.3 | 2.6 | no description | compare |
| b2642 | yfjW | +1.1 | 1.5 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4520 | ymgF | +0.9 | 1.6 | hypothetical protein (NCBI) | compare |
| b2168 | fruK | +0.9 | 2.5 | 1-phosphofructokinase (NCBI) | compare |
| b1070 | flgN | +0.8 | 2.4 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3863 | polA | +0.8 | 1.7 | DNA polymerase I (NCBI) | compare |
| b4279 | yjhB | +0.8 | 0.9 | putative transport protein (VIMSS) | compare |
| b1150 | ymfR | +0.8 | 1.6 | e14 prophage; predicted protein (NCBI) | compare |
| b2236 | yfaE | +0.7 | 2.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4451 | ryhB | +0.7 | 1.6 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1358 | ydaT | +0.7 | 2.0 | Rac prophage; predicted protein (NCBI) | compare |
| b1613 | manA | +0.6 | 1.5 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1936 | intG | +0.6 | 1.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b4651 | yibW | +0.6 | 0.6 | no description | compare |
| b1882 | cheY | +0.6 | 0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3382 | yhfY | +0.6 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1946 | fliN | +0.5 | 2.5 | flagellar motor switch protein (NCBI) | compare |
| b0234 | yafP | +0.5 | 1.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4493 | gapC | +0.5 | 1.5 | no description | compare |
| b1279 | yciS | +0.5 | 1.0 | conserved inner membrane protein (NCBI) | compare |
| b0549 | ybcO | +0.5 | 1.5 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4655 | ythA | +0.5 | 1.2 | expressed protein (RefSeq) | compare |
| b0858 | ybjO | +0.5 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b2911 | ssrS | +0.5 | 1.5 | 6S regulatory RNA (NCBI) | compare |
| b2114 | metG | +0.5 | 1.3 | methionyl-tRNA synthetase (NCBI) | compare |
| b2659 | b2659 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4436 | ryeC | +0.5 | 1.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3107 | yhaL | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2259 | pmrD | +0.5 | 0.9 | polymyxin resistance protein B (VIMSS) | compare |
| b1480 | sra | +0.5 | 0.8 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b4402 | yjjY | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b2579 | yfiD | +0.4 | 1.5 | pyruvate formate lyase subunit (NCBI) | compare |
| b4441 | glmY | +0.4 | 1.4 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b1609 | rstB | +0.4 | 2.5 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b3120 | yhaB | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1926 | fliT | +0.4 | 2.0 | predicted chaperone (NCBI) | compare |
| b4418 | sraB | +0.4 | 0.8 | unknown RNA (NCBI) | compare |
| b4172 | hfq | +0.4 | 0.6 | RNA-binding protein Hfq (NCBI) | compare |
| b1822 | rrmA | +0.4 | 1.5 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1073 | flgB | +0.4 | 2.4 | flagellar basal-body rod protein B (NCBI) | compare |
| b3206 | npr | +0.4 | 2.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0564 | appY | +0.4 | 0.7 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b0367 | tauC | +0.4 | 1.7 | taurine transporter subunit (NCBI) | compare |
| b1847 | yebF | +0.4 | 0.7 | predicted protein (RefSeq) | compare |
| b1550 | b1550 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4646 | yrdE | +0.4 | 2.4 | no description | compare |
| b4647 | mokA | +0.4 | 0.5 | no description | compare |
| b2817 | b2817 | +0.4 | 3.0 | putative amidase (VIMSS) | compare |
| b1540 | ydfH | +0.4 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1961 | dcm | +0.4 | 1.0 | DNA cytosine methylase (NCBI) | compare |
| b1064 | grxB | +0.4 | 3.1 | glutaredoxin 2 (Grx2) (NCBI) | compare |
| b1344 | ydaO | +0.4 | 1.2 | predicted C32 tRNA thiolase (NCBI) | compare |
| b4620 | yjbT | +0.4 | 2.5 | hypothetical protein, no homologs (RefSeq) | compare |
| b1960 | vsr | +0.4 | 1.7 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1442 | ydcU | +0.4 | 2.2 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b2372 | yfdV | +0.4 | 2.3 | predicted transporter (NCBI) | compare |
| b0850 | ybjC | +0.4 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b4181 | yjfI | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b1731 | cedA | +0.4 | 1.4 | cell division modulator (RefSeq) | compare |
| b3766 | ilvL | +0.4 | 2.1 | ilvG operon leader peptide (NCBI) | compare |
| b0866 | ybjQ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b4519 | icdC | +0.4 | 1.5 | no description | compare |
| b4573 | insZ | +0.4 | 1.6 | no description | compare |
| b2905 | gcvT | +0.4 | 2.6 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1134 | ymfB | +0.4 | 1.7 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b3512 | GadE | +0.4 | 1.7 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4408 | csrB | +0.4 | 1.9 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b2447 | yffP | +0.4 | 2.2 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1547 | stfQ | +0.4 | 2.1 | Qin prophage; predicted side tail fibre assembly protein (NCBI) | compare |
| b4060 | yjcB | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1278 | pgpB | +0.4 | 1.8 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b4692 | oweE | +0.4 | 1.7 | no description | compare |
| b0851 | nfsA | +0.4 | 1.5 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b0580 | ybdJ | +0.3 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b3979 | thrT | +0.3 | 0.3 | tRNA-Thr (NCBI) | compare |
| b0991 | ymcE | +0.3 | 1.8 | cold shock gene (NCBI) | compare |
| b1302 | puuE | +0.3 | 1.9 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b1850 | eda | +0.3 | 0.7 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b0388 | aroL | +0.3 | 2.3 | shikimate kinase II (NCBI) | compare |
| b1119 | nagK | +0.3 | 1.8 | N-acetyl-D-glucosamine kinase (NCBI) | compare |
| b2829 | ptsP | +0.3 | 3.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b0521 | ybcF | +0.3 | 1.6 | predicted carbamate kinase (NCBI) | compare |
| b1108 | ycfP | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1725 | yniA | +0.3 | 2.2 | predicted phosphotransferase/kinase (NCBI) | compare |
| b0881 | clpS | +0.3 | 0.9 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b2910 | zapA | +0.3 | 1.7 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1217 | chaB | +0.3 | 0.7 | cation transport regulator (NCBI) | compare |
| b1753 | ynjA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b2485 | hyfE | +0.3 | 2.2 | hydrogenase 4, membrane subunit (NCBI) | compare |
| b1063 | yceB | +0.3 | 1.6 | predicted lipoprotein (NCBI) | compare |
| b1527 | yneK | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1493 | gadB | +0.3 | 0.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4196 | ulaD | +0.3 | 1.6 | 3-keto-L-gulonate 6-phosphate decarboxylase (NCBI) | compare |
| b3130 | yhaV | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b2706 | gutM | +0.3 | 1.5 | DNA-binding transcriptional activator of glucitol operon (NCBI) | compare |
| b1598 | ydgD | +0.3 | 1.9 | predicted peptidase (NCBI) | compare |
| b1841 | yobA | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b2096 | gatY | +0.3 | 2.1 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2272 | yfbM | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b2544 | yphB | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1963 | b1963 | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1890 | motA | +0.3 | 2.0 | flagellar motor protein MotA (NCBI) | compare |
| b3138 | agaB | +0.3 | 1.2 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b1035 | ycdY | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b0979 | appB | +0.3 | 1.3 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |
| b0784 | moaD | +0.3 | 1.3 | molybdopterin synthase, small subunit (NCBI) | compare |
| b1723 | pfkB | +0.3 | 1.9 | 6-phosphofructokinase II; suppressor of pfkA (VIMSS) | compare |
| b3083 | ygjN | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4045 | yjbJ | +0.3 | 0.9 | predicted stress response protein (NCBI) | compare |
| b4630 | ykgP | +0.3 | 1.3 | no description | compare |
| b0210 | yafE | +0.3 | 1.7 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b2847 | yqeI | +0.3 | 0.5 | predicted transcriptional regulator (NCBI) | compare |
| b4435 | isrC | +0.3 | 0.7 | unknown RNA (NCBI) | compare |
| b2506 | yfgI | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b2258 | b2258 | +0.3 | 0.6 | putative transport/receptor protein (VIMSS) | compare |
| b1930 | yedF | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b4699 | fnrS | +0.3 | 0.5 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2369 | evgA | +0.3 | 1.3 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b2645 | yfjZ | +0.3 | 1.6 | CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b3262 | yhdJ | +0.3 | 2.0 | putative methyltransferase (VIMSS) | compare |
| b1343 | dbpA | +0.3 | 1.6 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b2792 | yqcC | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b0142 | folK | +0.3 | 0.4 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4577 | sgrS | +0.3 | 1.1 | small antisense RNA (NCBI) | compare |
| b4648 | ysaC | +0.3 | 1.4 | no description | compare |
| b1106 | ycfN | +0.3 | 1.5 | thiamin kinase (NCBI) | compare |
| b1600 | mdtJ | +0.3 | 0.8 | multidrug efflux system transporter (NCBI) | compare |
| b4177 | purA | +0.3 | 0.7 | adenylosuccinate synthetase (NCBI) | compare |
| b3086 | ygjQ | +0.3 | 1.7 | predicted thioredoxin-like (NCBI) | compare |
| b2500 | purN | +0.3 | 1.7 | phosphoribosylglycinamide formyltransferase (NCBI) | compare |
| b2510 | b2510 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1415 | aldA | +0.3 | 1.6 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b1155 | ymfS | +0.3 | 1.6 | e14 prophage; predicted protein (NCBI) | compare |
| b1085 | b1085 | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1075 | flgD | +0.3 | 1.0 | flagellar basal body rod modification protein D (NCBI) | compare |
| b2080 | b2080 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1079 | flgH | +0.3 | 1.7 | flagellar L-ring protein precursor H (NCBI) | compare |
| b0458 | ylaC | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4513 | kdpF | +0.3 | 1.1 | potassium ion accessory transporter subunit (NCBI) | compare |
| b4110 | yjcZ | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1829 | htpX | +0.3 | 1.3 | heat shock protein HtpX (NCBI) | compare |
| b4686 | yshB | +0.3 | 1.8 | expressed protein (RefSeq) | compare |
| b2505 | yfgH | +0.3 | 1.7 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4227 | ytfQ | +0.3 | 1.3 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b0387 | yaiI | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1887 | cheW | +0.3 | 1.5 | purine-binding chemotaxis protein (NCBI) | compare |
| b1231 | tyrT | +0.3 | 0.5 | tRNA-Tyr (NCBI) | compare |
| b1450 | b1450 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1992 | cobS | +0.3 | 0.8 | cobalamin synthase (NCBI) | compare |
| b4461 | yfjD | +0.3 | 1.9 | predicted inner membrane protein (RefSeq) | compare |
| b1586 | b1586 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3905 | rhaS | +0.3 | 2.0 | DNA-binding transcriptional activator, L-rhamnose-binding (NCBI) | compare |
| b3658 | selC | +0.3 | 1.3 | tRNA-Sec (NCBI) | compare |
| b1868 | yecE | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4614 | sokA | +0.3 | 1.0 | no description | compare |
| b2019 | hisG | +0.3 | 1.8 | ATP phosphoribosyltransferase (NCBI) | compare |
| b1952 | dsrB | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b3280 | yrdB | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b3950 | frwB | +0.3 | 1.1 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b1433 | b1433 | +0.3 | 1.1 | putative membrane transport protein (VIMSS) | compare |
| b1661 | cfa | +0.3 | 1.3 | cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) (NCBI) | compare |
| b1755 | ynjC | +0.3 | 1.2 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b1633 | nth | +0.3 | 1.6 | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | compare |
| b1377 | ompN | +0.3 | 1.4 | outer membrane pore protein N, non-specific (NCBI) | compare |
| b2012 | yeeD | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b3028 | mdaB | +0.3 | 1.6 | NADPH quinone reductase (NCBI) | compare |
| b4535 | yniD | +0.2 | 0.5 | predicted protein (RefSeq) | compare |
| b1271 | yciK | +0.2 | 1.4 | short chain dehydrogenase (NCBI) | compare |
| b3644 | yicC | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b0191 | yaeJ | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b0379 | yaiY | +0.2 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b4613 | dinQ | +0.2 | 0.8 | Damage inducible, function unknown (RefSeq) | compare |
| b0643 | ybeL | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b0965 | b0965 | +0.2 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2450 | yffS | +0.2 | 0.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2181 | yejG | +0.2 | 1.2 | hypothetical protein (NCBI) | compare |
| b2625 | yfjI | +0.2 | 0.6 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b0621 | dcuC | +0.2 | 1.9 | anaerobic C4-dicarboxylate transport (NCBI) | compare |
| b1685 | ydiH | +0.2 | 0.6 | predicted protein (RefSeq) | compare |
| b2448 | yffQ | +0.2 | 1.4 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2134 | pbpG | +0.2 | 1.9 | penicillin-binding protein 7 (VIMSS) | compare |
| b4012 | yjaB | +0.2 | 1.4 | predicted acetyltransferase (NCBI) | compare |
| b2120 | yehM | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b0393 | rdgC | +0.2 | 2.0 | recombination associated protein (NCBI) | compare |
| b1474 | fdnG | +0.2 | 1.6 | formate dehydrogenase-N, alpha subunit, nitrate-inducible (NCBI) | compare |
| b4509 | ylcG | +0.2 | 1.1 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4642 | yoeD | +0.2 | 0.7 | no description | compare |
| b4269 | yjgB | +0.2 | 1.5 | putative oxidoreductase (VIMSS) | compare |
| b4644 | ypjI | +0.2 | 1.1 | no description | compare |
| b1567 | intK | +0.2 | 0.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b2537 | hcaR | +0.2 | 1.5 | DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism (NCBI) | compare |
| b3059 | ygiH | +0.2 | 1.5 | hypothetical protein (NCBI) | compare |
| b2794 | yqcD | +0.2 | 1.8 | hypothetical protein (NCBI) | compare |
| b1940 | fliH | +0.2 | 1.4 | flagellar biosynthesis; export of flagellar proteins? (VIMSS) | compare |
| b1874 | cutC | +0.2 | 0.9 | copper homeostasis protein (NCBI) | compare |
| b0218 | yafU | +0.2 | 0.9 | predicted inner membrane protein (RefSeq) | compare |
| b1679 | sufE | +0.2 | 0.8 | cysteine desufuration protein SufE (NCBI) | compare |
| b3641 | ttk | +0.2 | 1.8 | putative transcriptional regulator (VIMSS) | compare |
| b1382 | ynbE | +0.2 | 0.6 | predicted lipoprotein (NCBI) | compare |
| b0440 | hupB | +0.2 | 1.2 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |