| | gene | name | fitness | t score | description | |
|---|
| b0564 | appY | +1.4 | 2.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b4402 | yjjY | +1.1 | 1.8 | hypothetical protein (NCBI) | compare |
| b4655 | ythA | +1.0 | 1.4 | expressed protein (RefSeq) | compare |
| b1823 | cspC | +0.9 | 2.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b4520 | ymgF | +0.9 | 1.8 | hypothetical protein (NCBI) | compare |
| b1217 | chaB | +0.8 | 2.2 | cation transport regulator (NCBI) | compare |
| b2934 | cmtB | +0.8 | 1.5 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2259 | pmrD | +0.8 | 1.5 | polymyxin resistance protein B (VIMSS) | compare |
| b2642 | yfjW | +0.7 | 1.2 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1730 | ydjO | +0.7 | 1.2 | predicted protein (RefSeq) | compare |
| b4418 | sraB | +0.7 | 1.6 | unknown RNA (NCBI) | compare |
| b2110 | yehC | +0.7 | 1.8 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2012 | yeeD | +0.7 | 3.7 | hypothetical protein (NCBI) | compare |
| b4048 | yjbM | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b1765 | ydjA | +0.6 | 1.0 | predicted oxidoreductase (NCBI) | compare |
| b3119 | tdcR | +0.6 | 2.4 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1842 | holE | +0.6 | 2.2 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1949 | fliQ | +0.6 | 3.0 | flagellar biosynthesis protein Q (NCBI) | compare |
| b4172 | hfq | +0.6 | 0.9 | RNA-binding protein Hfq (NCBI) | compare |
| b2369 | evgA | +0.6 | 2.9 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b1279 | yciS | +0.6 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b1600 | mdtJ | +0.6 | 1.9 | multidrug efflux system transporter (NCBI) | compare |
| b1257 | yciE | +0.6 | 0.6 | hypothetical protein (NCBI) | compare |
| b1950 | fliR | +0.6 | 2.7 | flagellar biosynthesis protein R (NCBI) | compare |
| b2911 | ssrS | +0.6 | 1.5 | 6S regulatory RNA (NCBI) | compare |
| b1595 | ynfL | +0.6 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1150 | ymfR | +0.6 | 1.0 | e14 prophage; predicted protein (NCBI) | compare |
| b1733 | chbG | +0.6 | 2.4 | hypothetical protein (NCBI) | compare |
| b0014 | dnaK | +0.6 | 1.4 | molecular chaperone DnaK (NCBI) | compare |
| b4603 | rseX | +0.5 | 0.7 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1480 | sra | +0.5 | 0.7 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1946 | fliN | +0.5 | 3.2 | flagellar motor switch protein (NCBI) | compare |
| b2114 | metG | +0.5 | 1.9 | methionyl-tRNA synthetase (NCBI) | compare |
| b4593 | ymgI | +0.5 | 0.8 | hypothetical protein (RefSeq) | compare |
| b4373 | rimI | +0.5 | 1.4 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4497 | yeeL | +0.5 | 1.2 | no description | compare |
| b2614 | grpE | +0.5 | 1.9 | heat shock protein (NCBI) | compare |
| b1792 | yeaO | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1865 | nudB | +0.5 | 1.5 | dATP pyrophosphohydrolase (NCBI) | compare |
| b4345 | mcrC | +0.5 | 1.0 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b2433 | b2433 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b3206 | npr | +0.5 | 3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3766 | ilvL | +0.5 | 2.0 | ilvG operon leader peptide (NCBI) | compare |
| b1070 | flgN | +0.5 | 1.1 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b1429 | tehA | +0.5 | 0.6 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b4592 | yccB | +0.5 | 1.6 | hypothetical protein (RefSeq) | compare |
| b1557 | cspB | +0.5 | 1.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b4653 | yicT | +0.5 | 0.8 | no description | compare |
| b4443 | gcvB | +0.5 | 0.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b0999 | cbpM | +0.5 | 2.3 | modulator of CbpA co-chaperone (NCBI) | compare |
| b1330 | ynaI | +0.5 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b1344 | ydaO | +0.4 | 1.9 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2579 | yfiD | +0.4 | 1.6 | pyruvate formate lyase subunit (NCBI) | compare |
| b0866 | ybjQ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b0627 | tatE | +0.4 | 1.0 | twin arginine translocase protein E (NCBI) | compare |
| b1179 | ycgL | +0.4 | 1.7 | conserved protein (NCBI) | compare |
| b0579 | ybdF | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b2741 | rpoS | +0.4 | 2.6 | RNA polymerase sigma factor (NCBI) | compare |
| b0730 | mngR | +0.4 | 1.1 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b2005 | yeeV | +0.4 | 1.9 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b0937 | ssuE | +0.4 | 1.8 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b2262 | menB | +0.4 | 2.2 | naphthoate synthase (NCBI) | compare |
| b2419 | yfeK | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1038 | csgF | +0.4 | 1.6 | predicted transport protein (NCBI) | compare |
| b1920 | fliY | +0.4 | 1.2 | cystine transporter subunit (NCBI) | compare |
| b1900 | araG | +0.4 | 2.1 | fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b4543 | ypaA | +0.4 | 1.7 | predicted protein (NCBI) | compare |
| b1671 | ydhX | +0.4 | 1.6 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b0503 | ybbB | +0.4 | 1.7 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b2920 | ygfH | +0.4 | 2.9 | propionyl-CoA:succinate-CoA transferase (NCBI) | compare |
| b1814 | sdaA | +0.4 | 0.8 | L-serine deaminase I (NCBI) | compare |
| b1556 | b1556 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1604 | ydgH | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1926 | fliT | +0.4 | 1.7 | predicted chaperone (NCBI) | compare |
| b1540 | ydfH | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0946 | ycbW | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1493 | gadB | +0.4 | 0.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2666 | yqaE | +0.4 | 1.5 | predicted membrane protein (NCBI) | compare |
| b0641 | rlpB | +0.4 | 1.6 | minor lipoprotein (NCBI) | compare |
| b1879 | flhA | +0.4 | 2.2 | flagellar biosynthesis protein A (NCBI) | compare |
| b2706 | gutM | +0.4 | 1.3 | DNA-binding transcriptional activator of glucitol operon (NCBI) | compare |
| b4491 | ycgH | +0.4 | 2.3 | no description | compare |
| b1711 | btuC | +0.4 | 1.8 | vtamin B12-transporter permease (NCBI) | compare |
| b1516 | lsrB | +0.4 | 2.3 | AI2 transporter (NCBI) | compare |
| b1783 | yeaG | +0.4 | 2.4 | yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | compare |
| b4461 | yfjD | +0.4 | 2.7 | predicted inner membrane protein (RefSeq) | compare |
| b4585 | sroB | +0.4 | 0.8 | Novel sRNA, function unknown (RefSeq) | compare |
| b4416 | rybA | +0.4 | 0.9 | unknown RNA (NCBI) | compare |
| b1004 | wrbA | +0.4 | 2.2 | TrpR binding protein WrbA (NCBI) | compare |
| b2439 | eutL | +0.4 | 2.3 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b1164 | ycgZ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b3031 | yqiA | +0.3 | 2.1 | predicted esterase (NCBI) | compare |
| b2209 | eco | +0.3 | 1.4 | ecotin precursor (NCBI) | compare |
| b1514 | lsrC | +0.3 | 0.5 | AI2 transporter (NCBI) | compare |
| b1531 | marA | +0.3 | 1.8 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b1108 | ycfP | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0858 | ybjO | +0.3 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b3890 | yiiF | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0018 | mokC | +0.3 | 0.7 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4559 | yjdO | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b4522 | yciX_1 | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4050 | yjbO | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2672 | ygaM | +0.3 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1806 | yeaY | +0.3 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b2726 | hypA | +0.3 | 1.7 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b1977 | asnT | +0.3 | 1.5 | tRNA-Asn (NCBI) | compare |
| b2539 | hcaF | +0.3 | 1.8 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b4546 | ypeB | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.3 | 1.8 | ilvB operon leader peptide (NCBI) | compare |
| b2377 | yfdY | +0.3 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b1171 | b1171 | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1079 | flgH | +0.3 | 1.6 | flagellar L-ring protein precursor H (NCBI) | compare |
| b3875 | ompL | +0.3 | 1.4 | predicted outer membrane porin L (NCBI) | compare |
| b0393 | rdgC | +0.3 | 2.6 | recombination associated protein (NCBI) | compare |
| b0310 | ykgH | +0.3 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b1723 | pfkB | +0.3 | 1.9 | 6-phosphofructokinase II; suppressor of pfkA (VIMSS) | compare |
| b3686 | ibpB | +0.3 | 2.3 | heat shock chaperone (NCBI) | compare |
| b1415 | aldA | +0.3 | 2.1 | Lactaldehyde / glycolaldehyde dehydrogenase aldA (EC 1.2.1.22; EC 1.2.1.21) (from data) | compare |
| b1883 | cheB | +0.3 | 1.6 | chemotaxis-specific methylesterase (NCBI) | compare |
| b1433 | b1433 | +0.3 | 2.1 | putative membrane transport protein (VIMSS) | compare |
| b3688 | yidQ | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1590 | ynfH | +0.3 | 1.5 | oxidoreductase, membrane subunit (NCBI) | compare |
| b3024 | ygiW | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1971 | yedY | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1584 | speG | +0.3 | 2.3 | spermidine N1-acetyltransferase (NCBI) | compare |
| b3512 | GadE | +0.3 | 1.3 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4509 | ylcG | +0.3 | 0.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4017 | arpA | +0.3 | 1.5 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b4646 | yrdE | +0.3 | 1.6 | no description | compare |
| b2179 | yejE | +0.3 | 1.7 | predicted oligopeptide transporter subunit (NCBI) | compare |
| b1784 | yeaH | +0.3 | 2.0 | yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) | compare |
| b1567 | intK | +0.3 | 0.7 | Qin prophage; predicted protein (RefSeq) | compare |
| b3023 | ygiV | +0.3 | 1.9 | predicted transcriptional regulator (NCBI) | compare |
| b2998 | yghW | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0714 | nei | +0.3 | 1.4 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b1755 | ynjC | +0.3 | 1.9 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b0354 | yaiL | +0.3 | 1.8 | nucleoprotein/polynucleotide-associated enzyme (VIMSS) | compare |
| b0163 | yaeH | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b3348 | slyX | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b2445 | yffN | +0.3 | 1.5 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1992 | cobS | +0.3 | 1.1 | cobalamin synthase (NCBI) | compare |
| b1252 | tonB | +0.3 | 0.9 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b4511 | ybdZ | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b4294 | insA-7 | +0.3 | 1.1 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b1639 | ydhA | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2659 | b2659 | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b3503 | arsC | +0.3 | 2.0 | arsenate reductase (NCBI) | compare |
| b1501 | YdeP | +0.3 | 2.0 | putative oxidoreductase, major subunit, acid resistance protein (Katherine Huang) | compare |
| b3626 | rfaJ | +0.3 | 1.4 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b3238 | yhcN | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0750 | nadA | +0.3 | 1.7 | quinolinate synthetase (NCBI) | compare |
| b1450 | b1450 | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0001 | thrL | +0.3 | 1.2 | thr operon leader peptide (NCBI) | compare |
| b2186 | yejK | +0.3 | 2.1 | nucleoid-associated protein NdpA (NCBI) | compare |
| b2019 | hisG | +0.3 | 1.7 | ATP phosphoribosyltransferase (NCBI) | compare |
| b1647 | ydhF | +0.3 | 1.2 | predicted oxidoreductase (NCBI) | compare |
| b0863 | artI | +0.3 | 1.4 | arginine transporter subunit (NCBI) | compare |
| b0342 | lacA | +0.3 | 2.2 | galactoside O-acetyltransferase (NCBI) | compare |
| b4409 | blr | +0.3 | 1.7 | beta-lactam resistance membrane protein (NCBI) | compare |
| b1243 | oppA | +0.3 | 1.7 | oligopeptide transporter subunit (NCBI) | compare |
| b1751 | ydjY | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1976 | b1976 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1270 | btuR | +0.3 | 1.2 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b0872 | hcr | +0.3 | 1.4 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b3998 | nfi | +0.3 | 1.4 | endonuclease V (deoxyinosine 3'endoduclease) (VIMSS) | compare |
| b2095 | gatZ | +0.3 | 1.5 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b4644 | ypjI | +0.3 | 1.2 | no description | compare |
| b0145 | dksA | +0.3 | 0.7 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1605 | ydgI | +0.3 | 1.8 | predicted arginine/ornithine antiporter transporter (NCBI) | compare |
| b3857 | mobA | +0.3 | 1.6 | molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI) | compare |
| b1694 | ydiF | +0.3 | 1.8 | fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit (NCBI) | compare |
| b2817 | b2817 | +0.3 | 1.5 | putative amidase (VIMSS) | compare |
| b1582 | ynfA | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b0788 | ybhN | +0.3 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b0384 | psiF | +0.3 | 1.2 | induced by phosphate starvation (VIMSS) | compare |
| b1399 | paaX | +0.3 | 0.9 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b0454 | ybaZ | +0.3 | 1.2 | predicted methyltransferase (NCBI) | compare |
| b1780 | yeaD | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1890 | motA | +0.3 | 1.4 | flagellar motor protein MotA (NCBI) | compare |
| b1333 | uspE | +0.3 | 1.4 | stress-induced protein (NCBI) | compare |
| b0279 | yagM | +0.3 | 0.4 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1816 | yoaE | +0.3 | 1.6 | fused predicted membrane protein/conserved protein (NCBI) | compare |
| b1642 | slyA | +0.3 | 0.6 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2448 | yffQ | +0.3 | 1.1 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1837 | yebW | +0.3 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b0187 | yaeR | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0493 | ybbO | +0.3 | 1.8 | short chain dehydrogenase (NCBI) | compare |
| b4151 | frdD | +0.2 | 0.7 | fumarate reductase subunit D (NCBI) | compare |
| b1710 | btuE | +0.2 | 1.6 | predicted glutathione peroxidase (NCBI) | compare |
| b2876 | b2876 | +0.2 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3152 | yraR | +0.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2336 | yfcS | +0.2 | 1.7 | predicted periplasmic pilus chaperone (NCBI) | compare |
| b2258 | b2258 | +0.2 | 0.5 | putative transport/receptor protein (VIMSS) | compare |
| b2455 | eutE | +0.2 | 1.3 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b2971 | yghG | +0.2 | 1.6 | hypothetical protein (NCBI) | compare |
| b0207 | dkgB | +0.2 | 1.6 | 2,5-diketo-D-gluconate reductase B (NCBI) | compare |
| b3271 | yhdZ | +0.2 | 1.5 | predicted amino-acid transporter subunit (NCBI) | compare |
| b1519 | tam | +0.2 | 1.6 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b1080 | flgI | +0.2 | 1.8 | homolog of Salmonella P-ring of flagella basal body (VIMSS) | compare |