| | gene | name | fitness | t score | description | |
|---|
| b2903 | gcvP | +2.6 | 18.4 | glycine dehydrogenase (NCBI) | compare |
| b2904 | gcvH | +2.4 | 5.2 | glycine cleavage system protein H (NCBI) | compare |
| b2127 | mlrA | +2.4 | 14.4 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4172 | hfq | +2.3 | 2.7 | RNA-binding protein Hfq (NCBI) | compare |
| b1038 | csgF | +2.0 | 8.1 | predicted transport protein (NCBI) | compare |
| b1037 | csgG | +1.9 | 15.2 | outer membrane lipoprotein (NCBI) | compare |
| b2808 | gcvA | +1.8 | 6.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1341 | b1341 | +1.8 | 10.3 | orf, hypothetical protein (VIMSS) | compare |
| b4676 | yoaK | +1.8 | 0.8 | expressed protein (RefSeq) | compare |
| b2905 | gcvT | +1.8 | 9.8 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1040 | csgD | +1.8 | 3.3 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1185 | dsbB | +1.8 | 7.4 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b0912 | ihfB | +1.8 | 7.6 | integration host factor subunit beta (NCBI) | compare |
| b3755 | yieP | +1.7 | 9.0 | predicted transcriptional regulator (NCBI) | compare |
| b3398 | yrfF | +1.6 | 4.4 | predicted inner membrane protein (NCBI) | compare |
| b1730 | ydjO | +1.5 | 1.9 | predicted protein (RefSeq) | compare |
| b2218 | rcsC | +1.4 | 9.9 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b0882 | clpA | +1.4 | 10.8 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b1493 | gadB | +1.4 | 1.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1942 | fliJ | +1.4 | 2.8 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1831 | proQ | +1.4 | 5.5 | putative solute/DNA competence effector (NCBI) | compare |
| b1712 | ihfA | +1.3 | 1.9 | integration host factor subunit alpha (NCBI) | compare |
| b4603 | rseX | +1.3 | 1.2 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1429 | tehA | +1.3 | 1.3 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b3181 | greA | +1.3 | 5.2 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3026 | qseC | +1.2 | 5.3 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b4042 | dgkA | +1.2 | 2.4 | diacylglycerol kinase (NCBI) | compare |
| b4416 | rybA | +1.2 | 2.2 | unknown RNA (NCBI) | compare |
| b0802 | ybiJ | +1.2 | 3.4 | hypothetical protein (NCBI) | compare |
| b3860 | dsbA | +1.2 | 7.6 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2216 | rcsD | +1.2 | 7.3 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b1039 | csgE | +1.2 | 6.5 | predicted transport protein (NCBI) | compare |
| b1041 | csgB | +1.1 | 4.8 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b1824 | yobF | +1.1 | 2.4 | hypothetical protein (NCBI) | compare |
| b2259 | pmrD | +1.1 | 1.5 | polymyxin resistance protein B (VIMSS) | compare |
| b2741 | rpoS | +1.1 | 5.6 | RNA polymerase sigma factor (NCBI) | compare |
| b1042 | csgA | +1.1 | 5.9 | cryptic curlin major subunit (NCBI) | compare |
| b3341 | rpsG | +1.1 | 1.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b4651 | yibW | +1.1 | 0.8 | no description | compare |
| b1332 | ynaJ | +1.1 | 0.7 | predicted inner membrane protein (NCBI) | compare |
| b2168 | fruK | +1.0 | 1.4 | 1-phosphofructokinase (NCBI) | compare |
| b2664 | ygaE | +1.0 | 5.0 | putative transcriptional regulator (VIMSS) | compare |
| b1862 | yebB | +1.0 | 3.6 | orf, hypothetical protein (VIMSS) | compare |
| b1524 | yneH | +1.0 | 1.4 | predicted glutaminase (NCBI) | compare |
| b2377 | yfdY | +1.0 | 2.7 | predicted inner membrane protein (NCBI) | compare |
| b4509 | ylcG | +1.0 | 4.3 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1222 | narX | +1.0 | 2.8 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1279 | yciS | +1.0 | 1.2 | conserved inner membrane protein (NCBI) | compare |
| b4025 | pgi | +1.0 | 6.6 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4505 | insX | +1.0 | 1.7 | predicted IS protein (RefSeq) | compare |
| b2642 | yfjW | +1.0 | 1.1 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4701 | sokX | +1.0 | 0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0232 | yafN | +0.9 | 0.9 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0556 | rzpD | +0.9 | 2.2 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b0059 | hepA | +0.9 | 7.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b1160 | elbA | +0.9 | 1.2 | hypothetical protein (NCBI) | compare |
| b3199 | yrbK | +0.9 | 3.0 | hypothetical protein (NCBI) | compare |
| b2911 | ssrS | +0.9 | 1.9 | 6S regulatory RNA (NCBI) | compare |
| b1278 | pgpB | +0.9 | 2.2 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b0889 | lrp | +0.9 | 2.1 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1159 | mcrA | +0.9 | 1.7 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b3973 | birA | +0.9 | 1.7 | biotin--protein ligase (NCBI) | compare |
| b2490 | b2490 | +0.9 | 2.5 | putative protein processing element (VIMSS) | compare |
| b1936 | intG | +0.9 | 1.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1179 | ycgL | +0.9 | 2.5 | conserved protein (NCBI) | compare |
| b1850 | eda | +0.9 | 2.9 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3644 | yicC | +0.9 | 3.8 | hypothetical protein (NCBI) | compare |
| b1620 | malI | +0.9 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0429 | cyoD | +0.8 | 2.8 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b2579 | yfiD | +0.8 | 1.8 | pyruvate formate lyase subunit (NCBI) | compare |
| b1007 | b1007 | +0.8 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4394 | yjjX | +0.8 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b4096 | phnL | +0.8 | 2.9 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4552 | yrhC | +0.8 | 0.9 | no description | compare |
| b1724 | ydiZ | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b1792 | yeaO | +0.8 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2990 | hybG | +0.8 | 2.3 | hydrogenase 2 accessory protein (NCBI) | compare |
| b4520 | ymgF | +0.8 | 1.0 | hypothetical protein (NCBI) | compare |
| b3250 | mreC | +0.8 | 1.8 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b4577 | sgrS | +0.8 | 1.8 | small antisense RNA (NCBI) | compare |
| b2114 | metG | +0.8 | 1.2 | methionyl-tRNA synthetase (NCBI) | compare |
| b1819 | manZ | +0.8 | 3.1 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b3934 | cytR | +0.8 | 4.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0247 | ykfG | +0.8 | 1.2 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b3636 | rpmG | +0.8 | 0.9 | 50S ribosomal protein L33 (NCBI) | compare |
| b2829 | ptsP | +0.7 | 5.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b0183 | rnhB | +0.7 | 1.8 | ribonuclease HII (NCBI) | compare |
| b2749 | ygbE | +0.7 | 3.6 | conserved inner membrane protein (NCBI) | compare |
| b4201 | priB | +0.7 | 2.5 | primosomal replication protein N (NCBI) | compare |
| b2279 | nuoK | +0.7 | 1.4 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2672 | ygaM | +0.7 | 4.0 | orf, hypothetical protein (VIMSS) | compare |
| b4594 | ymgJ | +0.7 | 1.6 | hypothetical protein (RefSeq) | compare |
| b2258 | b2258 | +0.7 | 1.0 | putative transport/receptor protein (VIMSS) | compare |
| b3027 | ygiZ | +0.7 | 0.5 | conserved inner membrane protein (NCBI) | compare |
| b1190 | dadX | +0.7 | 3.6 | alanine racemase (NCBI) | compare |
| b2809 | b2809 | +0.7 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3260 | dusB | +0.7 | 3.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b4436 | ryeC | +0.7 | 1.2 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3753 | rbsR | +0.7 | 4.3 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2083 | yegZ | +0.7 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2953 | yggU | +0.7 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b2457 | cchA | +0.7 | 2.5 | detox protein (VIMSS) | compare |
| b0787 | ybhM | +0.6 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b2951 | yggS | +0.6 | 1.7 | predicted enzyme (NCBI) | compare |
| b1651 | gloA | +0.6 | 2.0 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b4202 | rpsR | +0.6 | 0.7 | 30S ribosomal protein S18 (NCBI) | compare |
| b2498 | upp | +0.6 | 1.4 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b0840 | deoR | +0.6 | 1.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4373 | rimI | +0.6 | 1.3 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b0550 | rusA | +0.6 | 1.1 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b1668 | ydhS | +0.6 | 2.2 | conserved protein with FAD/NAD(P)-binding domain (NCBI) | compare |
| b3021 | ygiT | +0.6 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1582 | ynfA | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b4590 | ybfK | +0.6 | 1.5 | hypothetical protein (RefSeq) | compare |
| b0450 | glnK | +0.6 | 0.7 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b4418 | sraB | +0.6 | 0.9 | unknown RNA (NCBI) | compare |
| b1793 | yoaF | +0.6 | 1.9 | conserved outer membrane protein (NCBI) | compare |
| b4158 | yjeO | +0.6 | 1.9 | conserved inner membrane protein (NCBI) | compare |
| b2688 | gshA | +0.6 | 3.7 | glutamate--cysteine ligase (NCBI) | compare |
| b4497 | yeeL | +0.6 | 1.4 | no description | compare |
| b1707 | ydiV | +0.6 | 2.1 | hypothetical protein (NCBI) | compare |
| b1516 | lsrB | +0.6 | 2.2 | AI2 transporter (NCBI) | compare |
| b2730 | hypE | +0.6 | 3.1 | carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein (RefSeq) | compare |
| b1020 | phoH | +0.6 | 2.3 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b1243 | oppA | +0.6 | 2.6 | oligopeptide transporter subunit (NCBI) | compare |
| b2187 | yejL | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b0714 | nei | +0.6 | 2.1 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b1176 | minC | +0.6 | 1.4 | septum formation inhibitor (NCBI) | compare |
| b1584 | speG | +0.6 | 3.4 | spermidine N1-acetyltransferase (NCBI) | conserved |
| b2625 | yfjI | +0.6 | 1.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1526 | yneJ | +0.6 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2699 | recA | +0.6 | 0.8 | recombinase A (NCBI) | compare |
| b3164 | pnp | +0.6 | 1.3 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1708 | nlpC | +0.6 | 1.8 | predicted lipoprotein (NCBI) | compare |
| b1823 | cspC | +0.6 | 0.6 | stress protein, member of the CspA-family (NCBI) | compare |
| b1502 | ydeQ | +0.5 | 1.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4653 | yicT | +0.5 | 1.2 | no description | compare |
| b1992 | cobS | +0.5 | 1.4 | cobalamin synthase (NCBI) | compare |
| b3280 | yrdB | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b1790 | yeaM | +0.5 | 2.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2325 | yfcL | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1095 | fabF | +0.5 | 2.6 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2314 | dedD | +0.5 | 1.3 | putative lipoprotein (VIMSS) | compare |
| b1660 | ydhC | +0.5 | 2.0 | predicted transporter (NCBI) | compare |
| b2567 | rnc | +0.5 | 0.7 | ribonuclease III (NCBI) | compare |
| b0527 | ybcI | +0.5 | 2.4 | conserved inner membrane protein (NCBI) | compare |
| b1085 | b1085 | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4541 | yehK | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2175 | spr | +0.5 | 1.8 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b2528 | iscA | +0.5 | 0.6 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b2319 | usg | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b4546 | ypeB | +0.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b2481 | hyfA | +0.5 | 1.5 | hydrogenase 4 Fe-S subunit (VIMSS) | compare |
| b0613 | citG | +0.5 | 1.9 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b3138 | agaB | +0.5 | 1.8 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b0406 | tgt | +0.5 | 2.1 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b0881 | clpS | +0.5 | 0.8 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b0751 | pnuC | +0.5 | 2.7 | predicted nicotinamide mononucleotide transporter (NCBI) | compare |
| b1006 | ycdG | +0.5 | 2.0 | putative transport protein (VIMSS) | compare |
| b0796 | ybiH | +0.5 | 2.6 | putative transcriptional regulator (VIMSS) | compare |
| b3790 | rffC | +0.5 | 2.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2521 | sseA | +0.5 | 3.7 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b4407 | thiS | +0.5 | 0.9 | sulfur carrier protein ThiS (NCBI) | compare |
| b2553 | glnB | +0.5 | 2.0 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b0388 | aroL | +0.5 | 2.4 | shikimate kinase II (NCBI) | compare |
| b2427 | yfeT | +0.5 | 2.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1132 | hflD | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b3149 | yraO | +0.5 | 2.3 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b1703 | ydiA | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b3545 | proK | +0.5 | 0.8 | tRNA-Pro (NCBI) | compare |
| b1989 | asnV | +0.5 | 1.3 | tRNA-Asn (NCBI) | compare |
| b2229 | b2229 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2817 | b2817 | +0.5 | 3.1 | putative amidase (VIMSS) | compare |
| b2250 | b2250 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2962 | yggX | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1486 | ddpB | +0.5 | 1.2 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b2225 | yfaP | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b0605 | ahpC | +0.5 | 1.4 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3475 | acpT | +0.5 | 2.5 | holo-(acyl carrier protein) synthase 2 (NCBI) | compare |
| b1446 | ydcY | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b2024 | hisA | +0.5 | 1.2 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b3929 | rraA | +0.5 | 2.7 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b3625 | rfaY | +0.5 | 1.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1214 | ychA | +0.5 | 2.7 | predicted transcriptional regulator (NCBI) | compare |
| b2199 | ccmC | +0.5 | 1.8 | heme exporter subunit (NCBI) | compare |
| b3842 | rfaH | +0.5 | 2.3 | transcriptional activator RfaH (NCBI) | compare |
| b0814 | ompX | +0.5 | 1.5 | outer membrane protein X (NCBI) | compare |
| b1450 | b1450 | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3515 | gadW | +0.5 | 3.3 | DNA-binding transcriptional activator (NCBI) | compare |
| b4107 | phnB | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b1726 | yniB | +0.5 | 0.6 | predicted inner membrane protein (NCBI) | compare |
| b1427 | rimL | +0.5 | 1.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1465 | narV | +0.5 | 1.2 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b2577 | yfiE | +0.5 | 1.3 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b2948 | yqgE | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2538 | hcaE | +0.5 | 1.5 | 3-phenylpropionate dioxygenase, large (alpha) subunit (NCBI) | compare |
| b3844 | fre | +0.5 | 2.0 | NAD(P)H-flavin reductase (NCBI) | compare |
| b4084 | alsK | +0.5 | 2.8 | D-allose kinase (NCBI) | compare |
| b1754 | b1754 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0109 | nadC | +0.5 | 2.2 | nicotinate-nucleotide pyrophosphorylase (NCBI) | compare |