| | gene | name | fitness | t score | description | |
|---|
| b2903 | gcvP | +2.4 | 17.0 | glycine dehydrogenase (NCBI) | compare |
| b2904 | gcvH | +2.3 | 10.6 | glycine cleavage system protein H (NCBI) | compare |
| b2808 | gcvA | +2.1 | 8.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3341 | rpsG | +2.1 | 3.4 | 30S ribosomal protein S7 (NCBI) | compare |
| b2127 | mlrA | +2.0 | 10.5 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1341 | b1341 | +1.8 | 11.4 | orf, hypothetical protein (VIMSS) | compare |
| b1429 | tehA | +1.8 | 3.3 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0912 | ihfB | +1.7 | 6.5 | integration host factor subunit beta (NCBI) | compare |
| b2905 | gcvT | +1.7 | 10.9 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b3755 | yieP | +1.6 | 12.2 | predicted transcriptional regulator (NCBI) | compare |
| b1038 | csgF | +1.6 | 6.3 | predicted transport protein (NCBI) | compare |
| b2830 | nudH | +1.6 | 2.4 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1831 | proQ | +1.5 | 6.4 | putative solute/DNA competence effector (NCBI) | compare |
| b0882 | clpA | +1.5 | 11.7 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b2846 | yqeH | +1.5 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1185 | dsbB | +1.5 | 4.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3199 | yrbK | +1.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b1037 | csgG | +1.4 | 10.4 | outer membrane lipoprotein (NCBI) | compare |
| b1362 | rzpR | +1.4 | 1.6 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2218 | rcsC | +1.4 | 11.0 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b1041 | csgB | +1.4 | 5.8 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b1040 | csgD | +1.4 | 3.6 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1222 | narX | +1.3 | 5.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b2664 | ygaE | +1.2 | 6.3 | putative transcriptional regulator (VIMSS) | compare |
| b3398 | yrfF | +1.1 | 4.6 | predicted inner membrane protein (NCBI) | compare |
| b2216 | rcsD | +1.1 | 7.9 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b3181 | greA | +1.1 | 4.7 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1360 | ydaV | +1.1 | 1.6 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b1823 | cspC | +1.1 | 1.8 | stress protein, member of the CspA-family (NCBI) | compare |
| b1042 | csgA | +1.0 | 5.2 | cryptic curlin major subunit (NCBI) | compare |
| b3644 | yicC | +1.0 | 6.1 | hypothetical protein (NCBI) | compare |
| b2504 | yfgG | +1.0 | 2.3 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1273 | yciN | +1.0 | 2.1 | hypothetical protein (NCBI) | compare |
| b1217 | chaB | +1.0 | 2.2 | cation transport regulator (NCBI) | compare |
| b0889 | lrp | +0.9 | 2.8 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b4699 | fnrS | +0.9 | 1.2 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1558 | cspF | +0.9 | 2.7 | Qin prophage; cold shock protein (NCBI) | compare |
| b1039 | csgE | +0.9 | 5.5 | predicted transport protein (NCBI) | compare |
| b1824 | yobF | +0.9 | 2.3 | hypothetical protein (NCBI) | compare |
| b3860 | dsbA | +0.9 | 5.2 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b4025 | pgi | +0.9 | 5.8 | glucose-6-phosphate isomerase (NCBI) | compare |
| b1572 | ydfB | +0.9 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0232 | yafN | +0.9 | 0.8 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4515 | ybgT | +0.9 | 1.9 | hypothetical protein (NCBI) | compare |
| b0014 | dnaK | +0.9 | 1.4 | molecular chaperone DnaK (NCBI) | compare |
| b4373 | rimI | +0.8 | 3.0 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b2314 | dedD | +0.8 | 3.4 | putative lipoprotein (VIMSS) | compare |
| b1306 | pspC | +0.8 | 2.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b4503 | yafF | +0.8 | 0.4 | no description | compare |
| b0627 | tatE | +0.8 | 1.5 | twin arginine translocase protein E (NCBI) | compare |
| b0059 | hepA | +0.8 | 7.0 | ATP-dependent helicase HepA (NCBI) | compare |
| b3934 | cytR | +0.8 | 5.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4655 | ythA | +0.8 | 1.1 | expressed protein (RefSeq) | compare |
| b2579 | yfiD | +0.8 | 2.0 | pyruvate formate lyase subunit (NCBI) | compare |
| b1284 | yciT | +0.8 | 4.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2110 | yehC | +0.8 | 1.7 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3026 | qseC | +0.8 | 2.8 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b2111 | yehD | +0.8 | 2.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0082 | mraW | +0.8 | 2.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4410 | ecnA | +0.8 | 1.4 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b1302 | puuE | +0.8 | 2.6 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b2741 | rpoS | +0.8 | 3.5 | RNA polymerase sigma factor (NCBI) | compare |
| b3753 | rbsR | +0.7 | 4.9 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1286 | rnb | +0.7 | 2.1 | exoribonuclease II (NCBI) | compare |
| b0865 | ybjP | +0.7 | 2.3 | predicted lipoprotein (NCBI) | compare |
| b3133 | agaV | +0.7 | 2.4 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b1600 | mdtJ | +0.7 | 1.6 | multidrug efflux system transporter (NCBI) | compare |
| b1758 | b1758 | +0.7 | 1.2 | putative cytochrome oxidase (VIMSS) | compare |
| b1712 | ihfA | +0.7 | 1.1 | integration host factor subunit alpha (NCBI) | compare |
| b4066 | yjcF | +0.7 | 0.5 | hypothetical protein (NCBI) | compare |
| b4413 | sokC | +0.7 | 1.3 | regulatory antisense RNA (NCBI) | compare |
| b4345 | mcrC | +0.7 | 1.4 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b0685 | ybfE | +0.7 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3706 | trmE | +0.7 | 2.0 | tRNA modification GTPase (NCBI) | compare |
| b2659 | b2659 | +0.7 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0858 | ybjO | +0.7 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b1795 | yeaQ | +0.7 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b1584 | speG | +0.7 | 4.0 | spermidine N1-acetyltransferase (NCBI) | conserved |
| b1547 | stfQ | +0.7 | 2.5 | Qin prophage; predicted side tail fibre assembly protein (NCBI) | compare |
| b4246 | pyrL | +0.7 | 1.6 | pyrBI operon leader peptide (NCBI) | compare |
| b4676 | yoaK | +0.7 | 0.5 | expressed protein (RefSeq) | compare |
| b1427 | rimL | +0.7 | 2.7 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b4453 | ldrD | +0.6 | 1.4 | toxic polypeptide, small (NCBI) | compare |
| b1067 | yceH | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +0.6 | 5.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1085 | b1085 | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3929 | rraA | +0.6 | 3.9 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b0710 | ybgI | +0.6 | 2.4 | conserved metal-binding protein (NCBI) | compare |
| b4694 | yagP | +0.6 | 1.8 | no description | compare |
| b2948 | yqgE | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2175 | spr | +0.6 | 2.4 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0051 | ksgA | +0.6 | 2.4 | dimethyladenosine transferase (NCBI) | compare |
| b3183 | obgE | +0.6 | 0.8 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3264 | envR | +0.6 | 2.3 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2749 | ygbE | +0.6 | 3.2 | conserved inner membrane protein (NCBI) | compare |
| b0364 | yaiS | +0.6 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1270 | btuR | +0.6 | 2.0 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b3120 | yhaB | +0.6 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1418 | cybB | +0.6 | 1.2 | cytochrome b(561) (VIMSS) | compare |
| b1557 | cspB | +0.6 | 0.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b1317 | ycjU | +0.6 | 1.9 | predicted beta-phosphoglucomutase (NCBI) | compare |
| b0010 | yaaH | +0.6 | 2.8 | conserved inner membrane protein associated with acetate transport (NCBI) | compare |
| b1621 | malX | +0.6 | 3.6 | fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component (NCBI) | compare |
| b3871 | bipA | +0.6 | 4.2 | GTP-binding protein (NCBI) | compare |
| b4406 | yaeP | +0.6 | 0.8 | hypothetical protein (NCBI) | compare |
| b2141 | yohJ | +0.6 | 2.4 | hypothetical protein (NCBI) | compare |
| b1575 | dicB | +0.6 | 0.9 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1955 | yedP | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b0843 | ybjH | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b1992 | cobS | +0.6 | 1.4 | cobalamin synthase (NCBI) | compare |
| b0999 | cbpM | +0.6 | 1.6 | modulator of CbpA co-chaperone (NCBI) | compare |
| b1370 | insH-5 | +0.6 | 1.2 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b4062 | soxS | +0.5 | 2.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1818 | manY | +0.5 | 1.5 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1573 | ydfC | +0.5 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b0974 | hyaC | +0.5 | 2.3 | hydrogenase 1, b-type cytochrome subunit (NCBI) | compare |
| b4493 | gapC | +0.5 | 1.1 | no description | compare |
| b2618 | b2618 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4363 | yjjB | +0.5 | 1.9 | conserved inner membrane protein (RefSeq) | compare |
| b1671 | ydhX | +0.5 | 1.8 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b1430 | tehB | +0.5 | 2.4 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b3146 | yraL | +0.5 | 3.1 | predicted methyltransferase (NCBI) | compare |
| b1916 | sdiA | +0.5 | 3.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b1326 | mpaA | +0.5 | 2.1 | murein peptide amidase A (RefSeq) | compare |
| b0655 | gltI | +0.5 | 2.0 | glutamate and aspartate transporter subunit (NCBI) | compare |
| b4644 | ypjI | +0.5 | 2.4 | no description | compare |
| b4042 | dgkA | +0.5 | 1.1 | diacylglycerol kinase (NCBI) | compare |
| b0798 | ybiA | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b2989 | b2989 | +0.5 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b4245 | pyrB | +0.5 | 3.9 | aspartate carbamoyltransferase catalytic subunit (NCBI) | compare |
| b2582 | trxC | +0.5 | 1.7 | thioredoxin 2 (NCBI) | compare |
| b2309 | hisJ | +0.5 | 1.3 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b2977 | glcG | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1850 | eda | +0.5 | 1.0 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b0450 | glnK | +0.5 | 1.1 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b0955 | ycbZ | +0.5 | 2.7 | predicted peptidase (NCBI) | compare |
| b3752 | rbsK | +0.5 | 3.2 | ribokinase (NCBI) | compare |
| b2518 | ndk | +0.5 | 0.9 | nucleoside diphosphate kinase (NCBI) | compare |
| b0560 | nohB | +0.5 | 1.2 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b4450 | arcZ | +0.5 | 1.3 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b2262 | menB | +0.5 | 1.7 | naphthoate synthase (NCBI) | compare |
| b2962 | yggX | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b0471 | ybaB | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b0303 | ykgI | +0.5 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1358 | ydaT | +0.5 | 0.7 | Rac prophage; predicted protein (NCBI) | compare |
| b1931 | yedK | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b0404 | yajB | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1121 | ycfZ | +0.5 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b1633 | nth | +0.5 | 1.4 | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) | compare |
| b1862 | yebB | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4369 | leuP | +0.5 | 1.1 | tRNA-Leu (NCBI) | compare |
| b4172 | hfq | +0.5 | 0.5 | RNA-binding protein Hfq (NCBI) | compare |
| b1408 | b1408 | +0.5 | 1.9 | probable enzyme (VIMSS) | compare |
| b4096 | phnL | +0.5 | 1.2 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b2445 | yffN | +0.4 | 1.6 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1689 | b1689 | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1221 | narL | +0.4 | 2.9 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b0217 | yafT | +0.4 | 2.2 | predicted aminopeptidase (NCBI) | compare |
| b2080 | b2080 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2051 | wcaH | +0.4 | 0.5 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b4403 | yjtD | +0.4 | 1.7 | predicted rRNA methyltransferase (NCBI) | compare |
| b2703 | srlE | +0.4 | 1.9 | glucitol/sorbitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b4634 | ylcF | +0.4 | 1.3 | no description | compare |
| b0212 | gloB | +0.4 | 0.8 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b3156 | yhbS | +0.4 | 2.1 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1889 | motB | +0.4 | 2.2 | flagellar motor protein MotB (NCBI) | compare |
| b3973 | birA | +0.4 | 1.4 | biotin--protein ligase (NCBI) | compare |
| b2229 | b2229 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3242 | yhcR | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4242 | mgtA | +0.4 | 2.7 | magnesium transporter (NCBI) | compare |
| b1095 | fabF | +0.4 | 2.7 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b4071 | nrfB | +0.4 | 2.0 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b3206 | npr | +0.4 | 1.6 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1465 | narV | +0.4 | 0.6 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1269 | rluB | +0.4 | 1.4 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1926 | fliT | +0.4 | 2.0 | predicted chaperone (NCBI) | compare |
| b2199 | ccmC | +0.4 | 2.0 | heme exporter subunit (NCBI) | compare |
| b4596 | yciZ | +0.4 | 0.8 | hypothetical protein (RefSeq) | compare |
| b2951 | yggS | +0.4 | 1.7 | predicted enzyme (NCBI) | compare |
| b0872 | hcr | +0.4 | 1.0 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b1847 | yebF | +0.4 | 0.6 | predicted protein (RefSeq) | compare |
| b0949 | uup | +0.4 | 2.3 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2935 | tktA | +0.4 | 0.9 | transketolase 1, thiamin-binding (NCBI) | compare |
| b2576 | srmB | +0.4 | 1.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b3119 | tdcR | +0.4 | 0.5 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b2204 | napH | +0.4 | 1.9 | quinol dehydrogenase membrane component (NCBI) | compare |
| b3977 | tyrU | +0.4 | 0.5 | tRNA-Tyr (NCBI) | compare |
| b1921 | fliZ | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2436 | hemF | +0.4 | 1.9 | coproporphyrinogen III oxidase (NCBI) | compare |
| b3602 | yibL | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b1874 | cutC | +0.4 | 1.0 | copper homeostasis protein (NCBI) | compare |
| b1061 | dinI | +0.4 | 1.7 | DNA damage-inducible protein I (NCBI) | compare |
| b2243 | glpC | +0.4 | 2.5 | sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit (NCBI) | compare |
| b1201 | b1201 | +0.4 | 1.8 | putative sensor-type regulator (VIMSS) | compare |
| b1422 | ydcI | +0.4 | 1.3 | putative transcriptional regulator LYSR-type (VIMSS) | conserved |
| b1819 | manZ | +0.4 | 1.5 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b1739 | osmE | +0.4 | 0.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b4557 | yidD | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1634 | tppB | +0.4 | 2.0 | putative tripeptide transporter permease (NCBI) | compare |
| b1920 | fliY | +0.4 | 0.9 | cystine transporter subunit (NCBI) | compare |