| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +2.5 | 11.5 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +2.5 | 18.0 | glycine dehydrogenase (NCBI) | compare |
| b3341 | rpsG | +1.9 | 2.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b1038 | csgF | +1.8 | 7.4 | predicted transport protein (NCBI) | compare |
| b2905 | gcvT | +1.7 | 9.2 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1540 | ydfH | +1.7 | 4.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1185 | dsbB | +1.6 | 5.7 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b2127 | mlrA | +1.6 | 8.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1341 | b1341 | +1.5 | 8.3 | orf, hypothetical protein (VIMSS) | compare |
| b1831 | proQ | +1.5 | 6.0 | putative solute/DNA competence effector (NCBI) | compare |
| b1823 | cspC | +1.4 | 2.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b3755 | yieP | +1.4 | 10.4 | predicted transcriptional regulator (NCBI) | compare |
| b0882 | clpA | +1.4 | 9.6 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b3181 | greA | +1.4 | 7.9 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1217 | chaB | +1.3 | 2.1 | cation transport regulator (NCBI) | compare |
| b1573 | ydfC | +1.3 | 2.3 | Qin prophage; predicted protein (RefSeq) | compare |
| b2699 | recA | +1.3 | 2.1 | recombinase A (NCBI) | compare |
| b2218 | rcsC | +1.3 | 9.3 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b1037 | csgG | +1.3 | 9.9 | outer membrane lipoprotein (NCBI) | compare |
| b2664 | ygaE | +1.2 | 6.5 | putative transcriptional regulator (VIMSS) | compare |
| b1712 | ihfA | +1.2 | 2.2 | integration host factor subunit alpha (NCBI) | compare |
| b0912 | ihfB | +1.1 | 2.9 | integration host factor subunit beta (NCBI) | compare |
| b1231 | tyrT | +1.1 | 1.6 | tRNA-Tyr (NCBI) | compare |
| b0247 | ykfG | +1.1 | 2.3 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4660 | yhiL | +1.1 | 1.1 | no description | compare |
| b4647 | mokA | +1.1 | 1.2 | no description | compare |
| b2808 | gcvA | +1.1 | 4.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0450 | glnK | +1.1 | 2.2 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b3398 | yrfF | +1.1 | 2.9 | predicted inner membrane protein (NCBI) | compare |
| b1222 | narX | +1.0 | 3.2 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0802 | ybiJ | +1.0 | 2.6 | hypothetical protein (NCBI) | compare |
| b1334 | fnr | +1.0 | 2.9 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0082 | mraW | +0.9 | 3.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1584 | speG | +0.9 | 4.7 | spermidine N1-acetyltransferase (NCBI) | conserved |
| b2614 | grpE | +0.9 | 2.0 | heat shock protein (NCBI) | compare |
| b4042 | dgkA | +0.9 | 1.8 | diacylglycerol kinase (NCBI) | compare |
| b1257 | yciE | +0.9 | 0.7 | hypothetical protein (NCBI) | compare |
| b3183 | obgE | +0.9 | 1.7 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3644 | yicC | +0.9 | 4.5 | hypothetical protein (NCBI) | compare |
| b3860 | dsbA | +0.9 | 5.3 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2741 | rpoS | +0.9 | 4.1 | RNA polymerase sigma factor (NCBI) | compare |
| b3753 | rbsR | +0.9 | 5.9 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2216 | rcsD | +0.8 | 5.4 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b4546 | ypeB | +0.8 | 1.4 | hypothetical protein (NCBI) | compare |
| b3504 | yhiS | +0.8 | 0.8 | hypothetical protein (RefSeq) | compare |
| b0059 | hepA | +0.8 | 7.3 | ATP-dependent helicase HepA (NCBI) | compare |
| b3164 | pnp | +0.8 | 2.4 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2136 | yohD | +0.8 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +0.8 | 2.9 | hypothetical protein (NCBI) | compare |
| b1039 | csgE | +0.8 | 4.2 | predicted transport protein (NCBI) | compare |
| b0018 | mokC | +0.8 | 1.4 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b2259 | pmrD | +0.8 | 1.1 | polymyxin resistance protein B (VIMSS) | compare |
| b1161 | ycgX | +0.8 | 1.3 | hypothetical protein (NCBI) | compare |
| b0889 | lrp | +0.8 | 2.6 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b2579 | yfiD | +0.8 | 2.1 | pyruvate formate lyase subunit (NCBI) | compare |
| b3026 | qseC | +0.8 | 3.0 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0843 | ybjH | +0.7 | 1.9 | hypothetical protein (NCBI) | compare |
| b1412 | azoR | +0.7 | 2.7 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b3229 | sspA | +0.7 | 2.1 | stringent starvation protein A (NCBI) | compare |
| b1085 | b1085 | +0.7 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1731 | cedA | +0.7 | 2.1 | cell division modulator (RefSeq) | compare |
| b1159 | mcrA | +0.7 | 1.2 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b1366 | ydaY | +0.7 | 1.8 | Rac prophage; predicted protein (RefSeq) | compare |
| b4171 | miaA | +0.7 | 1.8 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b1835 | yebU | +0.7 | 1.9 | putative nucleolar proteins (VIMSS) | compare |
| b4603 | rseX | +0.7 | 0.6 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2911 | ssrS | +0.7 | 1.0 | 6S regulatory RNA (NCBI) | compare |
| b1503 | ydeR | +0.7 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4631 | ykgQ | +0.7 | 1.4 | no description | compare |
| b2830 | nudH | +0.6 | 0.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1493 | gadB | +0.6 | 0.6 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1273 | yciN | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +0.6 | 4.8 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1042 | csgA | +0.6 | 3.0 | cryptic curlin major subunit (NCBI) | compare |
| b0782 | moaB | +0.6 | 1.5 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b0610 | rnk | +0.6 | 2.4 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b1255 | yciC | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b3706 | trmE | +0.6 | 1.8 | tRNA modification GTPase (NCBI) | compare |
| b0542 | renD | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1095 | fabF | +0.6 | 3.4 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1954 | dsrA | +0.6 | 1.6 | regulatory antisense RNA (NCBI) | compare |
| b1644 | b1644 | +0.6 | 2.6 | putative membrane protein (VIMSS) | compare |
| b2248 | yfaX | +0.6 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2948 | yqgE | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1485 | ddpC | +0.6 | 1.3 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b3934 | cytR | +0.6 | 4.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2017 | yefM | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1013 | ycdC | +0.6 | 2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4451 | ryhB | +0.6 | 0.9 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b4025 | pgi | +0.6 | 3.4 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4450 | arcZ | +0.6 | 2.2 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1819 | manZ | +0.6 | 3.3 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b2688 | gshA | +0.6 | 2.9 | glutamate--cysteine ligase (NCBI) | compare |
| b1382 | ynbE | +0.6 | 1.1 | predicted lipoprotein (NCBI) | compare |
| b4692 | oweE | +0.6 | 1.4 | no description | compare |
| b4511 | ybdZ | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b0976 | hyaE | +0.6 | 1.9 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b0596 | entA | +0.6 | 3.1 | 2,3-dihydroxybenzoate-2,3-dehydrogenase (NCBI) | compare |
| b1916 | sdiA | +0.6 | 3.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b2947 | gshB | +0.5 | 2.4 | glutathione synthetase (NCBI) | compare |
| b1942 | fliJ | +0.5 | 0.8 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3146 | yraL | +0.5 | 3.4 | predicted methyltransferase (NCBI) | compare |
| b1949 | fliQ | +0.5 | 1.5 | flagellar biosynthesis protein Q (NCBI) | compare |
| b3029 | ygiN | +0.5 | 1.0 | quinol monooxygenase (NCBI) | compare |
| b0881 | clpS | +0.5 | 1.4 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b2427 | yfeT | +0.5 | 2.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3199 | yrbK | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b1550 | b1550 | +0.5 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1850 | eda | +0.5 | 1.3 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b3752 | rbsK | +0.5 | 3.6 | ribokinase (NCBI) | compare |
| b2293 | yfbT | +0.5 | 1.1 | putative phosphatase (VIMSS) | compare |
| b1921 | fliZ | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2939 | yqgB | +0.5 | 0.8 | predicted protein (RefSeq) | compare |
| b0527 | ybcI | +0.5 | 2.9 | conserved inner membrane protein (NCBI) | compare |
| b0949 | uup | +0.5 | 2.8 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1111 | ycfQ | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1446 | ydcY | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0268 | yagE | +0.5 | 2.4 | 2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage (NCBI) | compare |
| b4608 | ryfC | +0.5 | 1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b1842 | holE | +0.5 | 0.8 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1614 | ydgA | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b4686 | yshB | +0.5 | 1.8 | expressed protein (RefSeq) | compare |
| b2959 | yggL | +0.5 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4416 | rybA | +0.5 | 0.9 | unknown RNA (NCBI) | compare |
| b4299 | yjhI | +0.5 | 2.4 | KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2093 | gatB | +0.5 | 1.6 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b4598 | yncL | +0.5 | 1.2 | hypothetical protein (RefSeq) | compare |
| b3042 | b3042 | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0974 | hyaC | +0.5 | 1.4 | hydrogenase 1, b-type cytochrome subunit (NCBI) | compare |
| b2895 | fldB | +0.5 | 1.7 | flavodoxin 2 (NCBI) | compare |
| b3062 | ttdB | +0.5 | 3.0 | L(+)-tartrate dehydratase (NCBI) | compare |
| b0920 | ycbC | +0.5 | 2.3 | conserved inner membrane protein (NCBI) | compare |
| b1874 | cutC | +0.5 | 0.8 | copper homeostasis protein (NCBI) | compare |
| b1848 | yebG | +0.5 | 0.9 | conserved protein regulated by LexA (NCBI) | compare |
| b4402 | yjjY | +0.5 | 0.4 | hypothetical protein (NCBI) | compare |
| b3207 | yrbL | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1359 | ydaU | +0.5 | 1.9 | Rac prophage; conserved protein (NCBI) | compare |
| b1422 | ydcI | +0.5 | 1.8 | putative transcriptional regulator LYSR-type (VIMSS) | conserved |
| b2266 | elaB | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2998 | yghW | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b4203 | rplI | +0.5 | 1.9 | 50S ribosomal protein L9 (NCBI) | compare |
| b2576 | srmB | +0.5 | 1.6 | ATP-dependent RNA helicase (NCBI) | compare |
| b4554 | yibT | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1333 | uspE | +0.5 | 1.6 | stress-induced protein (NCBI) | compare |
| b2480 | bcp | +0.5 | 1.9 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b2012 | yeeD | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1287 | yciW | +0.5 | 1.8 | putative oxidoreductase (VIMSS) | compare |
| b1522 | yneF | +0.5 | 1.3 | predicted diguanylate cyclase (NCBI) | compare |
| b1286 | rnb | +0.5 | 1.4 | exoribonuclease II (NCBI) | compare |
| b1450 | b1450 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | +0.5 | 0.5 | predicted oxidoreductase (NCBI) | compare |
| b3868 | glnG | +0.5 | 1.8 | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | compare |
| b2310 | argT | +0.5 | 2.4 | lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b3260 | dusB | +0.5 | 2.3 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b2768 | ygcP | +0.5 | 1.5 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b3293 | yhdN | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b2634 | yfjR | +0.5 | 1.8 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1593 | b1593 | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0943 | b0943 | +0.5 | 1.9 | putative fimbrial-like protein (VIMSS) | compare |
| b0814 | ompX | +0.5 | 1.4 | outer membrane protein X (NCBI) | compare |
| b0213 | yafS | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1421 | trg | +0.5 | 1.6 | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor (NCBI) | compare |
| b1372 | b1372 | +0.5 | 2.5 | putative membrane protein (VIMSS) | compare |
| b1108 | ycfP | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4097 | phnK | +0.4 | 1.9 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1107 | nagZ | +0.4 | 1.4 | beta-hexosaminidase (NCBI) | compare |
| b1482 | osmC | +0.4 | 0.7 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b2027 | wzzB | +0.4 | 1.8 | regulator of length of O-antigen component of lipopolysaccharide chains (VIMSS) | compare |
| b3834 | yigP | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b4642 | yoeD | +0.4 | 0.8 | no description | compare |
| b2758 | ygcJ | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1760 | ynjH | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b4438 | cyaR | +0.4 | 1.0 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b3636 | rpmG | +0.4 | 0.8 | 50S ribosomal protein L33 (NCBI) | compare |
| b3387 | dam | +0.4 | 3.2 | DNA adenine methylase (NCBI) | compare |
| b2074 | b2074 | +0.4 | 2.7 | putative membrane protein (VIMSS) | compare |
| b0624 | crcB | +0.4 | 2.1 | camphor resistance protein CrcB (NCBI) | compare |
| b1821 | b1821 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1299 | puuR | +0.4 | 1.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1083 | flgL | +0.4 | 1.5 | flagellar hook-associated protein L (NCBI) | compare |
| b1423 | ydcJ | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b1926 | fliT | +0.4 | 0.8 | predicted chaperone (NCBI) | compare |
| b3888 | yiiD | +0.4 | 3.1 | predicted acetyltransferase (NCBI) | compare |
| b3741 | gidA | +0.4 | 2.0 | glucose-inhibited division protein A (NCBI) | compare |
| b0381 | ddlA | +0.4 | 2.2 | D-alanylalanine synthetase (NCBI) | compare |
| b3102 | yqjG | +0.4 | 1.6 | predicted S-transferase (NCBI) | compare |
| b1945 | fliM | +0.4 | 2.3 | flagellar motor switch protein M (NCBI) | compare |
| b1335 | ogt | +0.4 | 1.2 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b4453 | ldrD | +0.4 | 0.6 | toxic polypeptide, small (NCBI) | compare |
| b2390 | ypeC | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1847 | yebF | +0.4 | 0.6 | predicted protein (RefSeq) | compare |
| b2157 | yeiE | +0.4 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4623 | insO | +0.4 | 1.8 | no description | compare |
| b3658 | selC | +0.4 | 0.9 | tRNA-Sec (NCBI) | compare |
| b3778 | rep | +0.4 | 2.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1041 | csgB | +0.4 | 1.7 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b4375 | prfC | +0.4 | 1.7 | peptide chain release factor 3 (NCBI) | compare |
| b3071 | yqjI | +0.4 | 1.0 | predicted transcriptional regulator (NCBI) | compare |
| b1778 | yeaA | +0.4 | 1.0 | methionine sulfoxide reductase B (NCBI) | compare |
| b3836 | b3836 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |