| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +3.6 | 19.8 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +3.5 | 33.4 | glycine dehydrogenase (NCBI) | compare |
| b2905 | gcvT | +3.1 | 23.4 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2808 | gcvA | +3.0 | 19.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3181 | greA | +1.8 | 11.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2830 | nudH | +1.7 | 4.5 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2947 | gshB | +1.6 | 12.5 | glutathione synthetase (NCBI) | compare |
| b2951 | yggS | +1.4 | 9.5 | predicted enzyme (NCBI) | compare |
| b0059 | hepA | +1.4 | 12.4 | ATP-dependent helicase HepA (NCBI) | compare |
| b2688 | gshA | +1.3 | 10.2 | glutamate--cysteine ligase (NCBI) | compare |
| b2829 | ptsP | +1.3 | 10.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3341 | rpsG | +1.2 | 2.2 | 30S ribosomal protein S7 (NCBI) | compare |
| b3778 | rep | +1.2 | 9.3 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4701 | sokX | +1.1 | 2.2 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3206 | npr | +1.1 | 5.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4203 | rplI | +0.9 | 4.7 | 50S ribosomal protein L9 (NCBI) | compare |
| b4171 | miaA | +0.9 | 3.4 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0866 | ybjQ | +0.9 | 1.9 | hypothetical protein (NCBI) | compare |
| b0882 | clpA | +0.8 | 6.7 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b1190 | dadX | +0.8 | 5.0 | alanine racemase (NCBI) | compare |
| b1085 | b1085 | +0.8 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b1095 | fabF | +0.8 | 6.0 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1824 | yobF | +0.8 | 2.8 | hypothetical protein (NCBI) | compare |
| b2114 | metG | +0.8 | 1.6 | methionyl-tRNA synthetase (NCBI) | compare |
| b0949 | uup | +0.7 | 5.7 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1429 | tehA | +0.7 | 1.2 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1013 | ycdC | +0.7 | 2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0232 | yafN | +0.7 | 0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1731 | cedA | +0.7 | 2.9 | cell division modulator (RefSeq) | compare |
| b0852 | rimK | +0.7 | 4.8 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0381 | ddlA | +0.7 | 4.3 | D-alanylalanine synthetase (NCBI) | compare |
| b0218 | yafU | +0.7 | 3.2 | predicted inner membrane protein (RefSeq) | compare |
| b4577 | sgrS | +0.7 | 2.1 | small antisense RNA (NCBI) | compare |
| b2948 | yqgE | +0.7 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1159 | mcrA | +0.6 | 1.4 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b2937 | speB | +0.6 | 4.2 | agmatinase (NCBI) | compare |
| b3261 | fis | +0.6 | 2.0 | DNA-binding protein Fis (NCBI) | compare |
| b1038 | csgF | +0.6 | 3.1 | predicted transport protein (NCBI) | compare |
| b4402 | yjjY | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b4294 | insA-7 | +0.6 | 2.0 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b0249 | ykfF | +0.6 | 2.6 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2012 | yeeD | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b3616 | tdh | +0.6 | 3.3 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1593 | b1593 | +0.6 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1041 | csgB | +0.6 | 3.2 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b4141 | yjeH | +0.6 | 5.2 | predicted transporter (NCBI) | compare |
| b3806 | cyaA | +0.6 | 3.8 | adenylate cyclase (NCBI) | compare |
| b4163 | glyV | +0.6 | 1.8 | tRNA-Gly (NCBI) | compare |
| b1613 | manA | +0.6 | 1.8 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2258 | b2258 | +0.6 | 1.2 | putative transport/receptor protein (VIMSS) | compare |
| b2303 | folX | +0.6 | 4.9 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b0685 | ybfE | +0.6 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1831 | proQ | +0.6 | 2.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1380 | ldhA | +0.6 | 2.1 | D-lactate dehydrogenase (NCBI) | compare |
| b1606 | folM | +0.6 | 4.1 | short chain dehydrogenase (NCBI) | compare |
| b2494 | yfgC | +0.6 | 3.7 | predicted peptidase (NCBI) | compare |
| b1155 | ymfS | +0.6 | 2.9 | e14 prophage; predicted protein (NCBI) | compare |
| b1609 | rstB | +0.6 | 2.8 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b3504 | yhiS | +0.6 | 0.5 | hypothetical protein (RefSeq) | compare |
| b1037 | csgG | +0.5 | 4.4 | outer membrane lipoprotein (NCBI) | compare |
| b4493 | gapC | +0.5 | 2.0 | no description | compare |
| b4030 | yjbA | +0.5 | 3.4 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b3138 | agaB | +0.5 | 2.5 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b1222 | narX | +0.5 | 3.2 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3769 | ilvM | +0.5 | 2.2 | acetolactate synthase II, small subunit (NCBI) | compare |
| b2189 | proL | +0.5 | 1.5 | tRNA-Pro (NCBI) | compare |
| b1341 | b1341 | +0.5 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b0783 | moaC | +0.5 | 2.6 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b3676 | yidH | +0.5 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b4418 | sraB | +0.5 | 1.8 | unknown RNA (NCBI) | compare |
| b1299 | puuR | +0.5 | 2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3632 | rfaQ | +0.5 | 4.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1550 | b1550 | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2248 | yfaX | +0.5 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1871 | yecP | +0.5 | 2.8 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b2935 | tktA | +0.5 | 1.3 | transketolase 1, thiamin-binding (NCBI) | compare |
| b2236 | yfaE | +0.5 | 2.7 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1823 | cspC | +0.5 | 1.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b4692 | oweE | +0.5 | 2.4 | no description | compare |
| b2127 | mlrA | +0.5 | 3.0 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0053 | surA | +0.5 | 3.0 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1557 | cspB | +0.5 | 0.6 | Qin prophage; cold shock protein (NCBI) | compare |
| b4391 | yjjK | +0.5 | 3.8 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0889 | lrp | +0.5 | 1.7 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b2042 | galF | +0.5 | 3.3 | predicted subunit with GalU (NCBI) | compare |
| b0545 | ybcL | +0.5 | 3.7 | DLP12 prophage; predicted kinase inhibitor (NCBI) | compare |
| b2579 | yfiD | +0.5 | 1.3 | pyruvate formate lyase subunit (NCBI) | compare |
| b1132 | hflD | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b2183 | rsuA | +0.4 | 2.0 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b4096 | phnL | +0.4 | 2.6 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b0603 | ybdO | +0.4 | 0.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2642 | yfjW | +0.4 | 0.4 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4644 | ypjI | +0.4 | 2.0 | no description | compare |
| b0178 | hlpA | +0.4 | 1.5 | periplasmic chaperone (NCBI) | compare |
| b2506 | yfgI | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b4529 | ydbJ | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b1849 | purT | +0.4 | 2.6 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b3755 | yieP | +0.4 | 2.7 | predicted transcriptional regulator (NCBI) | compare |
| b1482 | osmC | +0.4 | 0.9 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b2625 | yfjI | +0.4 | 1.2 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b3929 | rraA | +0.4 | 3.5 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b2419 | yfeK | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1279 | yciS | +0.4 | 0.7 | conserved inner membrane protein (NCBI) | compare |
| b4647 | mokA | +0.4 | 0.5 | no description | compare |
| b1273 | yciN | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b3706 | trmE | +0.4 | 1.7 | tRNA modification GTPase (NCBI) | compare |
| b1628 | rsxB | +0.4 | 2.1 | electron transport complex protein RnfB (NCBI) | compare |
| b1302 | puuE | +0.4 | 1.6 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b1960 | vsr | +0.4 | 2.5 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1333 | uspE | +0.4 | 2.6 | stress-induced protein (NCBI) | compare |
| b3194 | yrbE | +0.4 | 3.2 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3034 | nudF | +0.4 | 2.4 | ADP-ribose pyrophosphatase (NCBI) | compare |
| b4454 | rdlD | +0.4 | 2.1 | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD (RefSeq) | compare |
| b1789 | yeaL | +0.4 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b4461 | yfjD | +0.4 | 3.2 | predicted inner membrane protein (RefSeq) | compare |
| b4225 | chpB | +0.4 | 2.4 | toxin of the ChpB-ChpS toxin-antitoxin system (NCBI) | compare |
| b0209 | yafD | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b4453 | ldrD | +0.4 | 1.4 | toxic polypeptide, small (NCBI) | compare |
| b4256 | yjgM | +0.4 | 3.1 | predicted acetyltransferase (NCBI) | compare |
| b4190 | yjfP | +0.4 | 2.2 | predicted hydrolase (NCBI) | compare |
| b3199 | yrbK | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b0627 | tatE | +0.4 | 1.0 | twin arginine translocase protein E (NCBI) | compare |
| b1243 | oppA | +0.4 | 2.5 | oligopeptide transporter subunit (NCBI) | compare |
| b1242 | ychE | +0.4 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b3934 | cytR | +0.4 | 3.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1040 | csgD | +0.4 | 1.1 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1755 | ynjC | +0.4 | 2.3 | fused transporter subunits of ABC superfamily: membrane components (RefSeq) | compare |
| b2066 | udk | +0.4 | 2.2 | uridine/cytidine kinase (VIMSS) | compare |
| b1591 | b1591 | +0.4 | 1.3 | putative oxidoreductase component (VIMSS) | compare |
| b3484 | yhhI | +0.4 | 1.3 | predicted transposase (NCBI) | compare |
| b3119 | tdcR | +0.4 | 1.1 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b3469 | zntA | +0.4 | 2.6 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b2346 | vacJ | +0.4 | 2.7 | predicted lipoprotein (NCBI) | compare |
| b1819 | manZ | +0.4 | 2.0 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b3096 | yqjB | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b4000 | hupA | +0.4 | 2.5 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b1671 | ydhX | +0.4 | 1.6 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b2706 | gutM | +0.4 | 2.1 | DNA-binding transcriptional activator of glucitol operon (NCBI) | compare |
| b1566 | flxA | +0.4 | 1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.6 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b3617 | kbl | +0.4 | 2.6 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b1692 | ydiB | +0.4 | 2.0 | quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b3869 | glnL | +0.4 | 2.6 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | compare |
| b2786 | barA | +0.4 | 3.4 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b1816 | yoaE | +0.4 | 2.3 | fused predicted membrane protein/conserved protein (NCBI) | compare |
| b3197 | kdsD | +0.4 | 2.7 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b0998 | torD | +0.4 | 0.7 | chaperone protein TorD (NCBI) | compare |
| b1362 | rzpR | +0.4 | 1.0 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b3101 | yqjF | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4135 | yjdC | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1634 | tppB | +0.4 | 2.1 | putative tripeptide transporter permease (NCBI) | compare |
| b0339 | cynT | +0.4 | 1.5 | carbonic anhydrase (NCBI) | compare |
| b3858 | yihD | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3644 | yicC | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2684 | mprA | +0.3 | 1.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1763 | topB | +0.3 | 1.7 | DNA topoisomerase III (NCBI) | compare |
| b1253 | yciA | +0.3 | 2.0 | predicted hydrolase (NCBI) | compare |
| b4452 | gadY | +0.3 | 2.5 | unknown RNA (NCBI) | compare |
| b1883 | cheB | +0.3 | 2.3 | chemotaxis-specific methylesterase (NCBI) | compare |
| b1725 | yniA | +0.3 | 2.8 | predicted phosphotransferase/kinase (NCBI) | compare |
| b2341 | yfcX | +0.3 | 2.4 | fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | compare |
| b0238 | gpt | +0.3 | 1.4 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b3102 | yqjG | +0.3 | 2.0 | predicted S-transferase (NCBI) | compare |
| b1642 | slyA | +0.3 | 1.0 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2726 | hypA | +0.3 | 1.8 | protein involved in nickel insertion into hydrogenases 3 (NCBI) | compare |
| b3867 | hemN | +0.3 | 2.9 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b4104 | phnE | +0.3 | 1.3 | phosphonate/organophosphate ester transporter subunit (NCBI) | compare |
| b0955 | ycbZ | +0.3 | 2.5 | predicted peptidase (NCBI) | compare |
| b3260 | dusB | +0.3 | 2.2 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b0190 | yaeQ | +0.3 | 2.7 | hypothetical protein (NCBI) | compare |
| b1961 | dcm | +0.3 | 0.7 | DNA cytosine methylase (NCBI) | compare |
| b2938 | speA | +0.3 | 2.5 | arginine decarboxylase (NCBI) | compare |
| b2052 | fcl | +0.3 | 1.5 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b4587 | insN | +0.3 | 2.1 | no description | compare |
| b2586 | yfiM | +0.3 | 1.5 | predicted protein (RefSeq) | compare |
| b1630 | rsxD | +0.3 | 1.5 | electron transport complex protein RnfD (NCBI) | compare |
| b2966 | yqgA | +0.3 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b1916 | sdiA | +0.3 | 2.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b2175 | spr | +0.3 | 2.1 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b1332 | ynaJ | +0.3 | 0.4 | predicted inner membrane protein (NCBI) | compare |
| b0661 | miaB | +0.3 | 2.5 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b4522 | yciX_1 | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.4 | conserved inner membrane protein (RefSeq) | compare |
| b2646 | ypjF | +0.3 | 1.2 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b2953 | yggU | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4618 | tisB | +0.3 | 2.3 | lexA-regulated toxic peptide (RefSeq) | compare |
| b1792 | yeaO | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0696 | kdpC | +0.3 | 0.8 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b3512 | GadE | +0.3 | 1.5 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2074 | b2074 | +0.3 | 1.8 | putative membrane protein (VIMSS) | compare |
| b1941 | fliI | +0.3 | 2.0 | flagellum-specific ATP synthase (NCBI) | compare |
| b1685 | ydiH | +0.3 | 0.7 | predicted protein (RefSeq) | compare |
| b2538 | hcaE | +0.3 | 1.4 | 3-phenylpropionate dioxygenase, large (alpha) subunit (NCBI) | compare |
| b1673 | ydhV | +0.3 | 1.7 | predicted oxidoreductase (NCBI) | compare |
| b0615 | citF | +0.3 | 1.7 | citrate lyase, citrate-ACP transferase (alpha) subunit (NCBI) | compare |
| b2572 | rseA | +0.3 | 1.6 | anti-sigma factor (NCBI) | compare |
| b2421 | cysM | +0.3 | 1.4 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1487 | ddpA | +0.3 | 1.9 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b2962 | yggX | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b1106 | ycfN | +0.3 | 1.9 | thiamin kinase (NCBI) | compare |