| | gene | name | fitness | t score | description | |
|---|
| b2808 | gcvA | +2.8 | 17.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2903 | gcvP | +2.3 | 21.6 | glycine dehydrogenase (NCBI) | compare |
| b2904 | gcvH | +2.2 | 13.9 | glycine cleavage system protein H (NCBI) | compare |
| b2905 | gcvT | +2.1 | 16.7 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2741 | rpoS | +1.9 | 13.9 | RNA polymerase sigma factor (NCBI) | compare |
| b2951 | yggS | +1.9 | 14.3 | predicted enzyme (NCBI) | compare |
| b4172 | hfq | +1.6 | 2.9 | RNA-binding protein Hfq (NCBI) | compare |
| b3164 | pnp | +1.5 | 6.8 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0889 | lrp | +1.3 | 7.6 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1095 | fabF | +1.3 | 10.5 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b4203 | rplI | +1.2 | 7.9 | 50S ribosomal protein L9 (NCBI) | compare |
| b2688 | gshA | +1.2 | 10.1 | glutamate--cysteine ligase (NCBI) | compare |
| b1085 | b1085 | +1.2 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b1190 | dadX | +1.1 | 5.3 | alanine racemase (NCBI) | compare |
| b4402 | yjjY | +1.0 | 2.6 | hypothetical protein (NCBI) | compare |
| b0059 | hepA | +1.0 | 9.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b2947 | gshB | +1.0 | 4.9 | glutathione synthetase (NCBI) | compare |
| b3341 | rpsG | +1.0 | 1.7 | 30S ribosomal protein S7 (NCBI) | compare |
| b1824 | yobF | +0.9 | 4.0 | hypothetical protein (NCBI) | compare |
| b1236 | galU | +0.9 | 5.6 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3741 | gidA | +0.9 | 5.9 | glucose-inhibited division protein A (NCBI) | compare |
| b2846 | yqeH | +0.9 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4030 | yjbA | +0.9 | 6.9 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b2937 | speB | +0.9 | 6.6 | agmatinase (NCBI) | compare |
| b2830 | nudH | +0.9 | 1.9 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1855 | lpxM | +0.9 | 5.1 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b2259 | pmrD | +0.8 | 1.9 | polymyxin resistance protein B (VIMSS) | compare |
| b1765 | ydjA | +0.8 | 1.4 | predicted oxidoreductase (NCBI) | compare |
| b2829 | ptsP | +0.8 | 6.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b0232 | yafN | +0.8 | 1.1 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1831 | proQ | +0.8 | 3.2 | putative solute/DNA competence effector (NCBI) | compare |
| b1823 | cspC | +0.7 | 1.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b1731 | cedA | +0.7 | 4.3 | cell division modulator (RefSeq) | compare |
| b2258 | b2258 | +0.7 | 1.7 | putative transport/receptor protein (VIMSS) | compare |
| b3194 | yrbE | +0.7 | 5.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3706 | trmE | +0.7 | 3.9 | tRNA modification GTPase (NCBI) | compare |
| b1159 | mcrA | +0.7 | 1.6 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b0955 | ycbZ | +0.7 | 5.4 | predicted peptidase (NCBI) | compare |
| b1273 | yciN | +0.7 | 1.9 | hypothetical protein (NCBI) | compare |
| b3778 | rep | +0.7 | 5.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1758 | b1758 | +0.7 | 1.6 | putative cytochrome oxidase (VIMSS) | compare |
| b2659 | b2659 | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1294 | sapA | +0.6 | 4.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1524 | yneH | +0.6 | 1.3 | predicted glutaminase (NCBI) | compare |
| b0471 | ybaB | +0.6 | 3.3 | hypothetical protein (NCBI) | compare |
| b3616 | tdh | +0.6 | 4.0 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1634 | tppB | +0.6 | 4.4 | putative tripeptide transporter permease (NCBI) | compare |
| b1595 | ynfL | +0.6 | 2.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3632 | rfaQ | +0.6 | 5.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4660 | yhiL | +0.6 | 0.5 | no description | compare |
| b0882 | clpA | +0.6 | 4.8 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b1299 | puuR | +0.6 | 3.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3454 | livF | +0.6 | 3.6 | ATP-binding component of leucine transport (VIMSS) | compare |
| b3780 | rhlB | +0.6 | 5.2 | ATP-dependent RNA helicase (NCBI) | compare |
| b1916 | sdiA | +0.6 | 4.3 | DNA-binding transcriptional activator (NCBI) | compare |
| b0381 | ddlA | +0.6 | 4.2 | D-alanylalanine synthetase (NCBI) | compare |
| b1548 | nohA | +0.5 | 2.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1191 | b1191 | +0.5 | 3.9 | orf, hypothetical protein (VIMSS) | compare |
| b4436 | ryeC | +0.5 | 1.8 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1333 | uspE | +0.5 | 3.2 | stress-induced protein (NCBI) | compare |
| b0998 | torD | +0.5 | 1.3 | chaperone protein TorD (NCBI) | compare |
| b3181 | greA | +0.5 | 3.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3753 | rbsR | +0.5 | 4.6 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b4000 | hupA | +0.5 | 3.5 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3842 | rfaH | +0.5 | 4.1 | transcriptional activator RfaH (NCBI) | compare |
| b3138 | agaB | +0.5 | 2.4 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b1187 | fadR | +0.5 | 3.7 | fatty acid metabolism regulator (NCBI) | compare |
| b1667 | ydhR | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b2576 | srmB | +0.5 | 2.6 | ATP-dependent RNA helicase (NCBI) | compare |
| b3867 | hemN | +0.5 | 4.6 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b0624 | crcB | +0.5 | 2.9 | camphor resistance protein CrcB (NCBI) | compare |
| b3977 | tyrU | +0.5 | 1.0 | tRNA-Tyr (NCBI) | compare |
| b1550 | b1550 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1708 | nlpC | +0.5 | 1.8 | predicted lipoprotein (NCBI) | compare |
| b1725 | yniA | +0.5 | 2.4 | predicted phosphotransferase/kinase (NCBI) | compare |
| b3979 | thrT | +0.5 | 0.5 | tRNA-Thr (NCBI) | compare |
| b3624 | rfaZ | +0.5 | 1.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3644 | yicC | +0.5 | 3.0 | hypothetical protein (NCBI) | compare |
| b1279 | yciS | +0.5 | 0.9 | conserved inner membrane protein (NCBI) | compare |
| b3468 | yhhN | +0.5 | 4.2 | conserved inner membrane protein (NCBI) | compare |
| b2962 | yggX | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b1961 | dcm | +0.5 | 1.6 | DNA cytosine methylase (NCBI) | compare |
| b4603 | rseX | +0.5 | 0.6 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3630 | rfaP | +0.5 | 4.1 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3658 | selC | +0.5 | 2.2 | tRNA-Sec (NCBI) | compare |
| b3387 | dam | +0.5 | 4.2 | DNA adenine methylase (NCBI) | compare |
| b3469 | zntA | +0.5 | 3.5 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b1295 | ymjA | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b1040 | csgD | +0.5 | 1.3 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b3292 | zntR | +0.5 | 1.8 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b1038 | csgF | +0.5 | 2.2 | predicted transport protein (NCBI) | compare |
| b4066 | yjcF | +0.5 | 0.5 | hypothetical protein (NCBI) | compare |
| b3195 | yrbF | +0.5 | 3.9 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1164 | ycgZ | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b1422 | ydcI | +0.5 | 3.0 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b3293 | yhdN | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b1739 | osmE | +0.4 | 1.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1606 | folM | +0.4 | 3.8 | short chain dehydrogenase (NCBI) | compare |
| b1730 | ydjO | +0.4 | 0.9 | predicted protein (RefSeq) | compare |
| b3346 | yheO | +0.4 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b3752 | rbsK | +0.4 | 3.7 | ribokinase (NCBI) | compare |
| b2156 | lysP | +0.4 | 3.7 | lysine transporter (NCBI) | compare |
| b1090 | plsX | +0.4 | 2.9 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b0949 | uup | +0.4 | 3.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2817 | b2817 | +0.4 | 2.9 | putative amidase (VIMSS) | compare |
| b1253 | yciA | +0.4 | 1.5 | predicted hydrolase (NCBI) | compare |
| b3929 | rraA | +0.4 | 3.5 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1271 | yciK | +0.4 | 1.7 | short chain dehydrogenase (NCBI) | compare |
| b2494 | yfgC | +0.4 | 3.0 | predicted peptidase (NCBI) | compare |
| b2910 | zapA | +0.4 | 2.8 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b1954 | dsrA | +0.4 | 1.5 | regulatory antisense RNA (NCBI) | compare |
| b1438 | ydcQ | +0.4 | 1.7 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0082 | mraW | +0.4 | 2.4 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3803 | hemX | +0.4 | 3.5 | predicted uroporphyrinogen III methylase (NCBI) | compare |
| b0685 | ybfE | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3670 | ilvN | +0.4 | 3.0 | acetolactate synthase small subunit (NCBI) | compare |
| b1429 | tehA | +0.4 | 0.8 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b3149 | yraO | +0.4 | 3.0 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b2742 | nlpD | +0.4 | 3.2 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3456 | livM | +0.4 | 3.4 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b0852 | rimK | +0.4 | 2.3 | ribosomal protein S6 modification protein (NCBI) | compare |
| b1593 | b1593 | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3107 | yhaL | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3631 | rfaG | +0.4 | 3.7 | glucosyltransferase I (NCBI) | compare |
| b4443 | gcvB | +0.4 | 0.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b2346 | vacJ | +0.4 | 3.0 | predicted lipoprotein (NCBI) | compare |
| b1890 | motA | +0.4 | 2.6 | flagellar motor protein MotA (NCBI) | compare |
| b4071 | nrfB | +0.4 | 1.1 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b2318 | truA | +0.4 | 1.4 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1194 | ycgR | +0.4 | 1.6 | protein involved in flagellar function (NCBI) | compare |
| b1329 | b1329 | +0.4 | 2.5 | putative transport periplasmic protein (VIMSS) | compare |
| b4529 | ydbJ | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b0814 | ompX | +0.4 | 1.7 | outer membrane protein X (NCBI) | compare |
| b4158 | yjeO | +0.4 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b1952 | dsrB | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0830 | yliB | +0.4 | 3.0 | predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b2421 | cysM | +0.4 | 1.7 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2661 | gabD | +0.4 | 2.8 | succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) | compare |
| b4224 | chpS | +0.4 | 2.1 | suppressor of inhibitory function of ChpB, PemI-like, autoregulated (VIMSS) | compare |
| b1874 | cutC | +0.4 | 1.5 | copper homeostasis protein (NCBI) | compare |
| b4545 | ypdJ | +0.4 | 1.0 | no description | compare |
| b1433 | b1433 | +0.4 | 2.6 | putative membrane transport protein (VIMSS) | compare |
| b3146 | yraL | +0.4 | 2.9 | predicted methyltransferase (NCBI) | compare |
| b0605 | ahpC | +0.4 | 2.2 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b3229 | sspA | +0.4 | 1.8 | stringent starvation protein A (NCBI) | compare |
| b0782 | moaB | +0.4 | 1.4 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b1434 | ydcN | +0.4 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1418 | cybB | +0.4 | 1.3 | cytochrome b(561) (VIMSS) | compare |
| b4163 | glyV | +0.4 | 1.2 | tRNA-Gly (NCBI) | compare |
| b4450 | arcZ | +0.4 | 1.7 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0219 | yafV | +0.4 | 2.3 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b2189 | proL | +0.4 | 1.2 | tRNA-Pro (NCBI) | compare |
| b2944 | sprT | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3102 | yqjG | +0.4 | 2.0 | predicted S-transferase (NCBI) | compare |
| b2474 | ypfI | +0.4 | 2.7 | predicted hydrolase (NCBI) | compare |
| b4461 | yfjD | +0.4 | 2.9 | predicted inner membrane protein (RefSeq) | compare |
| b0791 | ybhQ | +0.4 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b4373 | rimI | +0.4 | 1.9 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b4630 | ykgP | +0.4 | 1.3 | no description | compare |
| b1358 | ydaT | +0.4 | 0.8 | Rac prophage; predicted protein (NCBI) | compare |
| b2611 | ypjD | +0.4 | 2.5 | predicted inner membrane protein (RefSeq) | compare |
| b3617 | kbl | +0.4 | 2.6 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b4011 | yjaA | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b4594 | ymgJ | +0.4 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1390 | paaC | +0.4 | 1.9 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b3455 | livG | +0.4 | 2.2 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b3071 | yqjI | +0.3 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b3686 | ibpB | +0.3 | 2.0 | heat shock chaperone (NCBI) | compare |
| b0190 | yaeQ | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b1992 | cobS | +0.3 | 1.4 | cobalamin synthase (NCBI) | compare |
| b2175 | spr | +0.3 | 1.3 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b3928 | yiiU | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1248 | b1248 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4256 | yjgM | +0.3 | 2.8 | predicted acetyltransferase (NCBI) | compare |
| b2605 | yfiB | +0.3 | 1.8 | predicted outer membrane lipoprotein (NCBI) | compare |
| b2127 | mlrA | +0.3 | 2.3 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4570 | lomR | +0.3 | 0.9 | no description | compare |
| b3515 | gadW | +0.3 | 3.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1475 | fdnH | +0.3 | 2.1 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b1743 | spy | +0.3 | 1.4 | envelope stress induced periplasmic protein (NCBI) | compare |
| b3625 | rfaY | +0.3 | 2.0 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2579 | yfiD | +0.3 | 1.0 | pyruvate formate lyase subunit (NCBI) | compare |
| b1189 | dadA | +0.3 | 2.0 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b2572 | rseA | +0.3 | 1.4 | anti-sigma factor (NCBI) | compare |
| b2061 | wzb | +0.3 | 1.2 | protein-tyrosine phosphatase (NCBI) | compare |
| b3213 | gltD | +0.3 | 2.3 | glutamate synthase, 4Fe-4S protein, small subunit (NCBI) | compare |
| b2409 | yfeR | +0.3 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4137 | cutA | +0.3 | 2.4 | copper binding protein, copper sensitivity (NCBI) | compare |
| b1914 | uvrY | +0.3 | 2.0 | response regulator (NCBI) | compare |
| b1790 | yeaM | +0.3 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3457 | livH | +0.3 | 2.5 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b3934 | cytR | +0.3 | 2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1037 | csgG | +0.3 | 2.5 | outer membrane lipoprotein (NCBI) | compare |
| b3166 | truB | +0.3 | 2.1 | tRNA pseudouridine synthase B (NCBI) | compare |
| b2262 | menB | +0.3 | 1.2 | naphthoate synthase (NCBI) | compare |
| b4538 | yoeF | +0.3 | 1.0 | hypothetical protein (RefSeq) | compare |
| b3627 | rfaI | +0.3 | 2.5 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2319 | usg | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2948 | yqgE | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1485 | ddpC | +0.3 | 1.6 | D-ala-D-ala transporter subunit (NCBI) | compare |