| | gene | name | fitness | t score | description | |
|---|
| b2808 | gcvA | +2.6 | 15.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2903 | gcvP | +2.4 | 22.2 | glycine dehydrogenase (NCBI) | compare |
| b2904 | gcvH | +2.3 | 13.0 | glycine cleavage system protein H (NCBI) | compare |
| b2905 | gcvT | +2.2 | 18.2 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2741 | rpoS | +2.0 | 15.3 | RNA polymerase sigma factor (NCBI) | compare |
| b2951 | yggS | +2.0 | 13.6 | predicted enzyme (NCBI) | compare |
| b4402 | yjjY | +1.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b3979 | thrT | +1.4 | 1.6 | tRNA-Thr (NCBI) | compare |
| b4172 | hfq | +1.4 | 2.4 | RNA-binding protein Hfq (NCBI) | compare |
| b1095 | fabF | +1.4 | 12.3 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3164 | pnp | +1.3 | 7.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2688 | gshA | +1.2 | 10.0 | glutamate--cysteine ligase (NCBI) | compare |
| b2947 | gshB | +1.2 | 8.2 | glutathione synthetase (NCBI) | compare |
| b1831 | proQ | +1.2 | 4.2 | putative solute/DNA competence effector (NCBI) | compare |
| b0059 | hepA | +1.1 | 10.4 | ATP-dependent helicase HepA (NCBI) | compare |
| b4203 | rplI | +1.1 | 7.1 | 50S ribosomal protein L9 (NCBI) | compare |
| b4030 | yjbA | +1.0 | 6.7 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b2829 | ptsP | +1.0 | 8.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1190 | dadX | +1.0 | 5.5 | alanine racemase (NCBI) | compare |
| b2642 | yfjW | +0.9 | 1.0 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3341 | rpsG | +0.9 | 2.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b3181 | greA | +0.9 | 6.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1085 | b1085 | +0.8 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2937 | speB | +0.8 | 6.1 | agmatinase (NCBI) | compare |
| b3741 | gidA | +0.8 | 5.3 | glucose-inhibited division protein A (NCBI) | compare |
| b0882 | clpA | +0.8 | 7.1 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b3842 | rfaH | +0.8 | 5.2 | transcriptional activator RfaH (NCBI) | compare |
| b1855 | lpxM | +0.8 | 5.7 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1294 | sapA | +0.8 | 5.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1422 | ydcI | +0.8 | 5.5 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1429 | tehA | +0.8 | 1.5 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1236 | galU | +0.8 | 4.7 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2114 | metG | +0.8 | 1.5 | methionyl-tRNA synthetase (NCBI) | compare |
| b0503 | ybbB | +0.8 | 3.5 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b0889 | lrp | +0.8 | 3.1 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b3658 | selC | +0.7 | 3.5 | tRNA-Sec (NCBI) | compare |
| b0082 | mraW | +0.7 | 3.0 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1191 | b1191 | +0.7 | 5.4 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +0.7 | 3.7 | hypothetical protein (NCBI) | compare |
| b0955 | ycbZ | +0.7 | 5.8 | predicted peptidase (NCBI) | compare |
| b1582 | ynfA | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b4552 | yrhC | +0.7 | 1.1 | no description | compare |
| b3778 | rep | +0.7 | 4.9 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1765 | ydjA | +0.6 | 1.0 | predicted oxidoreductase (NCBI) | compare |
| b1961 | dcm | +0.6 | 2.0 | DNA cytosine methylase (NCBI) | compare |
| b1438 | ydcQ | +0.6 | 2.3 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2659 | b2659 | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1465 | narV | +0.6 | 2.3 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b0605 | ahpC | +0.6 | 2.9 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b4655 | ythA | +0.6 | 0.9 | expressed protein (RefSeq) | compare |
| b3194 | yrbE | +0.6 | 4.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4614 | sokA | +0.6 | 1.9 | no description | compare |
| b3752 | rbsK | +0.6 | 4.9 | ribokinase (NCBI) | compare |
| b3454 | livF | +0.6 | 3.3 | ATP-binding component of leucine transport (VIMSS) | compare |
| b1793 | yoaF | +0.6 | 1.5 | conserved outer membrane protein (NCBI) | compare |
| b1334 | fnr | +0.6 | 2.0 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4570 | lomR | +0.6 | 1.4 | no description | compare |
| b1382 | ynbE | +0.6 | 1.5 | predicted lipoprotein (NCBI) | compare |
| b1450 | b1450 | +0.6 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b0542 | renD | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1134 | ymfB | +0.6 | 2.0 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1222 | narX | +0.6 | 3.7 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b4000 | hupA | +0.6 | 2.7 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3616 | tdh | +0.5 | 3.0 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b3780 | rhlB | +0.5 | 5.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b1822 | rrmA | +0.5 | 2.0 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1916 | sdiA | +0.5 | 4.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b3632 | rfaQ | +0.5 | 5.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4522 | yciX_1 | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b3753 | rbsR | +0.5 | 4.5 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b3455 | livG | +0.5 | 3.4 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b1725 | yniA | +0.5 | 2.4 | predicted phosphotransferase/kinase (NCBI) | compare |
| b2209 | eco | +0.5 | 1.7 | ecotin precursor (NCBI) | compare |
| b1874 | cutC | +0.5 | 1.5 | copper homeostasis protein (NCBI) | compare |
| b1557 | cspB | +0.5 | 1.3 | Qin prophage; cold shock protein (NCBI) | compare |
| b1350 | recE | +0.5 | 3.3 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b0783 | moaC | +0.5 | 3.3 | molybdenum cofactor biosynthesis protein C (NCBI) | compare |
| b3102 | yqjG | +0.5 | 2.5 | predicted S-transferase (NCBI) | compare |
| b0471 | ybaB | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b1634 | tppB | +0.5 | 3.2 | putative tripeptide transporter permease (NCBI) | compare |
| b3468 | yhhN | +0.5 | 4.4 | conserved inner membrane protein (NCBI) | compare |
| b1607 | ydgC | +0.5 | 1.2 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b0696 | kdpC | +0.5 | 1.6 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b3523 | yhjE | +0.5 | 4.3 | predicted transporter (NCBI) | compare |
| b2620 | smpB | +0.5 | 1.1 | SsrA-binding protein (NCBI) | compare |
| b0685 | ybfE | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1333 | uspE | +0.5 | 1.8 | stress-induced protein (NCBI) | compare |
| b2576 | srmB | +0.5 | 2.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b3934 | cytR | +0.5 | 4.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0995 | torR | +0.5 | 2.0 | DNA-binding response regulator in two-component regulatory system with TorS (NCBI) | compare |
| b2007 | yeeX | +0.5 | 0.9 | conserved protein (RefSeq) | compare |
| b0381 | ddlA | +0.5 | 3.3 | D-alanylalanine synthetase (NCBI) | compare |
| b2579 | yfiD | +0.5 | 2.0 | pyruvate formate lyase subunit (NCBI) | compare |
| b3387 | dam | +0.5 | 4.2 | DNA adenine methylase (NCBI) | compare |
| b1914 | uvrY | +0.5 | 3.5 | response regulator (NCBI) | compare |
| b0785 | moaE | +0.5 | 3.0 | molybdopterin synthase, large subunit (NCBI) | compare |
| b3644 | yicC | +0.5 | 3.3 | hypothetical protein (NCBI) | compare |
| b0099 | mutT | +0.5 | 2.7 | nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP (NCBI) | compare |
| b3195 | yrbF | +0.5 | 4.2 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0178 | hlpA | +0.5 | 3.2 | periplasmic chaperone (NCBI) | compare |
| b3630 | rfaP | +0.5 | 4.0 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1821 | b1821 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3197 | kdsD | +0.5 | 3.7 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b2698 | recX | +0.5 | 1.7 | RecA regulator RecX (NCBI) | compare |
| b1575 | dicB | +0.5 | 1.3 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4503 | yafF | +0.5 | 0.7 | no description | compare |
| b1558 | cspF | +0.5 | 1.5 | Qin prophage; cold shock protein (NCBI) | compare |
| b2183 | rsuA | +0.5 | 1.8 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b3206 | npr | +0.5 | 3.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2494 | yfgC | +0.5 | 3.1 | predicted peptidase (NCBI) | compare |
| b1189 | dadA | +0.4 | 3.5 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b4202 | rpsR | +0.4 | 0.9 | 30S ribosomal protein S18 (NCBI) | compare |
| b3706 | trmE | +0.4 | 2.5 | tRNA modification GTPase (NCBI) | compare |
| b1984 | asnW | +0.4 | 0.9 | tRNA-Asn (NCBI) | compare |
| b4613 | dinQ | +0.4 | 1.2 | Damage inducible, function unknown (RefSeq) | compare |
| b3911 | cpxA | +0.4 | 3.6 | two-component sensor protein (NCBI) | compare |
| b1591 | b1591 | +0.4 | 1.6 | putative oxidoreductase component (VIMSS) | compare |
| b1341 | b1341 | +0.4 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b0580 | ybdJ | +0.4 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b3229 | sspA | +0.4 | 2.0 | stringent starvation protein A (NCBI) | compare |
| b4653 | yicT | +0.4 | 1.0 | no description | compare |
| b2572 | rseA | +0.4 | 2.1 | anti-sigma factor (NCBI) | compare |
| b1602 | pntB | +0.4 | 3.1 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b2005 | yeeV | +0.4 | 2.6 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b2156 | lysP | +0.4 | 3.6 | lysine transporter (NCBI) | compare |
| b2474 | ypfI | +0.4 | 3.2 | predicted hydrolase (NCBI) | compare |
| b2538 | hcaE | +0.4 | 2.2 | 3-phenylpropionate dioxygenase, large (alpha) subunit (NCBI) | compare |
| b4260 | pepA | +0.4 | 3.6 | leucyl aminopeptidase (NCBI) | compare |
| b4450 | arcZ | +0.4 | 2.1 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0238 | gpt | +0.4 | 1.7 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b3929 | rraA | +0.4 | 3.0 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b2565 | recO | +0.4 | 2.6 | DNA repair protein RecO (NCBI) | compare |
| b2521 | sseA | +0.4 | 3.3 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b4436 | ryeC | +0.4 | 1.2 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3933 | ftsN | +0.4 | 3.5 | essential cell division protein (NCBI) | compare |
| b0295 | ykgL | +0.4 | 2.8 | hypothetical protein (NCBI) | compare |
| b1176 | minC | +0.4 | 1.1 | septum formation inhibitor (NCBI) | compare |
| b2199 | ccmC | +0.4 | 1.5 | heme exporter subunit (NCBI) | compare |
| b3192 | yrbC | +0.4 | 3.2 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1955 | yedP | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1485 | ddpC | +0.4 | 2.2 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b2450 | yffS | +0.4 | 1.3 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2017 | yefM | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1946 | fliN | +0.4 | 1.6 | flagellar motor switch protein (NCBI) | compare |
| b1253 | yciA | +0.4 | 1.4 | predicted hydrolase (NCBI) | compare |
| b1153 | ymfQ | +0.4 | 1.1 | e14 prophage; conserved protein (NCBI) | compare |
| b3672 | ivbL | +0.4 | 0.9 | ilvB operon leader peptide (NCBI) | compare |
| b2935 | tktA | +0.4 | 1.3 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1302 | puuE | +0.4 | 1.8 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b3627 | rfaI | +0.4 | 3.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b4094 | phnN | +0.4 | 1.8 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b2954 | yggV | +0.4 | 1.1 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b1883 | cheB | +0.4 | 2.1 | chemotaxis-specific methylesterase (NCBI) | compare |
| b3193 | yrbD | +0.4 | 3.2 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1406 | ydbC | +0.4 | 2.1 | predicted oxidoreductase, NAD(P)-binding (NCBI) | compare |
| b2643 | yfjX | +0.4 | 1.3 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b2428 | yfeU | +0.4 | 1.9 | N-acetylmuramic acid-6-phosphate etherase (NCBI) | compare |
| b3456 | livM | +0.4 | 3.2 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b3243 | aaeR | +0.4 | 2.2 | predicted DNA-binding transcriptional regulator, efflux system (NCBI) | compare |
| b3867 | hemN | +0.4 | 3.4 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b3191 | yrbB | +0.4 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b2303 | folX | +0.4 | 3.0 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b1329 | b1329 | +0.4 | 2.6 | putative transport periplasmic protein (VIMSS) | compare |
| b4158 | yjeO | +0.4 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b4353 | yjiX | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b0058 | rluA | +0.4 | 2.4 | pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) | compare |
| b1286 | rnb | +0.4 | 1.7 | exoribonuclease II (NCBI) | compare |
| b4695 | ykgT | +0.4 | 1.3 | no description | compare |
| b4294 | insA-7 | +0.4 | 1.3 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b3133 | agaV | +0.4 | 1.5 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b3803 | hemX | +0.4 | 3.1 | predicted uroporphyrinogen III methylase (NCBI) | compare |
| b0862 | artQ | +0.4 | 1.0 | arginine transporter subunit (NCBI) | compare |
| b0469 | apt | +0.4 | 2.7 | adenine phosphoribosyltransferase (NCBI) | compare |
| b3280 | yrdB | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b2754 | ygbF | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4558 | yifL | +0.4 | 1.8 | predicted lipoprotein (NCBI) | compare |
| b3469 | zntA | +0.4 | 2.5 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b0352 | mhpE | +0.4 | 2.2 | 4-hydroxy-2-ketovalerate aldolase (NCBI) | compare |
| b1610 | tus | +0.4 | 1.8 | DNA replication terminus site-binding protein (NCBI) | compare |
| b1038 | csgF | +0.4 | 1.4 | predicted transport protein (NCBI) | compare |
| b1399 | paaX | +0.4 | 1.9 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b1823 | cspC | +0.4 | 0.8 | stress protein, member of the CspA-family (NCBI) | compare |
| b0183 | rnhB | +0.4 | 1.0 | ribonuclease HII (NCBI) | compare |
| b0880 | cspD | +0.4 | 0.9 | cold shock protein homolog (NCBI) | compare |
| b1819 | manZ | +0.4 | 1.6 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b2101 | yegW | +0.4 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4045 | yjbJ | +0.4 | 1.3 | predicted stress response protein (NCBI) | compare |
| b0443 | ybaW | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b2262 | menB | +0.4 | 1.6 | naphthoate synthase (NCBI) | compare |
| b2318 | truA | +0.4 | 1.4 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1130 | phoP | +0.4 | 0.9 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b0852 | rimK | +0.4 | 2.3 | ribosomal protein S6 modification protein (NCBI) | compare |
| b3293 | yhdN | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b1187 | fadR | +0.3 | 1.8 | fatty acid metabolism regulator (NCBI) | compare |
| b2906 | visC | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b1613 | manA | +0.3 | 1.0 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b2440 | eutC | +0.3 | 2.4 | ethanolamine ammonia-lyase small subunit (NCBI) | compare |
| b1418 | cybB | +0.3 | 1.3 | cytochrome b(561) (VIMSS) | compare |
| b1684 | sufA | +0.3 | 1.0 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b3146 | yraL | +0.3 | 2.6 | predicted methyltransferase (NCBI) | compare |