| | gene | name | fitness | t score | description | |
|---|
| b2499 | purM | -4.2 | -6.2 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b0726 | sucA | -4.0 | -7.7 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b0522 | purK | -3.8 | -10.9 | phosphoribosylaminoimidazole carboxylase (NCBI) | compare |
| b2557 | purL | -3.7 | -13.4 | phosphoribosylformylglycinamidine synthase (NCBI) | compare |
| b4006 | purH | -3.6 | -15.5 | bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) | compare |
| b3642 | pyrE | -3.6 | -6.1 | orotate phosphoribosyltransferase (NCBI) | compare |
| b4232 | fbp | -3.4 | -13.9 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b0523 | purE | -3.4 | -5.5 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b0945 | pyrD | -3.3 | -13.5 | dihydroorotate dehydrogenase (NCBI) | compare |
| b1192 | ldcA | -3.1 | -6.8 | L,D-carboxypeptidase A (NCBI) | compare |
| b1281 | pyrF | -3.1 | -5.0 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b1062 | pyrC | -3.0 | -10.4 | dihydroorotase (NCBI) | compare |
| b2312 | purF | -3.0 | -6.5 | amidophosphoribosyltransferase (NCBI) | compare |
| b4005 | purD | -2.9 | -8.0 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b4245 | pyrB | -2.8 | -12.4 | aspartate carbamoyltransferase catalytic subunit (NCBI) | compare |
| b0564 | appY | -2.8 | -1.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b0033 | carB | -2.6 | -14.8 | carbamoyl-phosphate synthase large subunit (NCBI) | compare |
| b2282 | nuoH | -2.6 | -3.7 | NADH dehydrogenase subunit H (NCBI) | compare |
| b0739 | tolA | -2.6 | -6.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b2476 | purC | -2.6 | -3.4 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b4676 | yoaK | -2.5 | -1.2 | expressed protein (RefSeq) | compare |
| b2276 | nuoN | -2.3 | -7.1 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b1291 | sapD | -2.3 | -4.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0738 | tolR | -2.2 | -5.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0114 | aceE | -2.2 | -2.5 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b4146 | yjeK | -2.2 | -4.8 | predicted lysine aminomutase (NCBI) | compare |
| b0032 | carA | -2.1 | -6.9 | carbamoyl-phosphate synthase small subunit (NCBI) | compare |
| b2500 | purN | -2.1 | -6.7 | phosphoribosylglycinamide formyltransferase (NCBI) | compare |
| b1130 | phoP | -2.1 | -3.6 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1551 | b1551 | -2.0 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2518 | ndk | -2.0 | -3.5 | nucleoside diphosphate kinase (NCBI) | compare |
| b0729 | sucD | -2.0 | -5.0 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b4177 | purA | -2.0 | -1.4 | adenylosuccinate synthetase (NCBI) | compare |
| b4139 | aspA | -1.9 | -9.8 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b2277 | nuoM | -1.9 | -6.2 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2278 | nuoL | -1.9 | -10.2 | NADH dehydrogenase subunit L (NCBI) | compare |
| b0200 | gmhB | -1.9 | -3.0 | hypothetical protein (NCBI) | compare |
| b3082 | ygjM | -1.9 | -2.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1058 | yceO | -1.9 | -0.9 | hypothetical protein (NCBI) | compare |
| b1332 | ynaJ | -1.9 | -1.3 | predicted inner membrane protein (NCBI) | compare |
| b1346 | ydaQ | -1.8 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b0728 | sucC | -1.7 | -8.6 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b2283 | nuoG | -1.7 | -8.1 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2281 | nuoI | -1.7 | -3.0 | NADH dehydrogenase subunit I (NCBI) | compare |
| b2853 | ygeI | -1.7 | -1.0 | hypothetical protein (NCBI) | compare |
| b3021 | ygiT | -1.7 | -1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3236 | mdh | -1.7 | -9.5 | malate dehydrogenase (NCBI) | compare |
| b2287 | nuoB | -1.7 | -3.4 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1545 | pinQ | -1.6 | -0.5 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b2284 | nuoF | -1.6 | -5.7 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b4155 | yjeA | -1.6 | -1.9 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b3806 | cyaA | -1.6 | -5.6 | adenylate cyclase (NCBI) | compare |
| b1182 | hlyE | -1.6 | -1.1 | hemolysin E (VIMSS) | compare |
| b0437 | clpP | -1.6 | -6.8 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b2286 | nuoC | -1.6 | -5.6 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3027 | ygiZ | -1.6 | -1.0 | conserved inner membrane protein (NCBI) | compare |
| b3443 | yrhA | -1.5 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1165 | ymgA | -1.5 | -1.0 | hypothetical protein (NCBI) | compare |
| b2350 | yfdG | -1.5 | -5.9 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b0303 | ykgI | -1.4 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3792 | wzxE | -1.4 | -6.5 | O-antigen translocase (NCBI) | compare |
| b3839 | tatC | -1.4 | -6.1 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0741 | pal | -1.4 | -5.1 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b2285 | nuoE | -1.4 | -2.7 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3725 | pstB | -1.3 | -0.9 | phosphate transporter subunit (NCBI) | compare |
| b4042 | dgkA | -1.3 | -2.5 | diacylglycerol kinase (NCBI) | compare |
| b0730 | mngR | -1.3 | -2.3 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0737 | tolQ | -1.3 | -2.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2859 | ygeO | -1.3 | -3.3 | hypothetical protein (RefSeq) | compare |
| b2279 | nuoK | -1.3 | -2.0 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3500 | gor | -1.3 | -2.0 | glutathione reductase (NCBI) | compare |
| b2280 | nuoJ | -1.3 | -5.2 | NADH dehydrogenase subunit J (NCBI) | compare |
| b2652 | ileY | -1.3 | -1.4 | tRNA-Ile (NCBI) | compare |
| b0890 | ftsK | -1.2 | -5.9 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b2329 | aroC | -1.2 | -4.7 | chorismate synthase (NCBI) | compare |
| b0740 | tolB | -1.2 | -4.9 | translocation protein TolB precursor (NCBI) | compare |
| b2288 | nuoA | -1.2 | -2.6 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0724 | sdhB | -1.2 | -5.7 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b3764 | yifE | -1.2 | -4.2 | hypothetical protein (NCBI) | compare |
| b0630 | lipB | -1.2 | -1.8 | protein of lipoate biosynthesis (VIMSS) | compare |
| b4066 | yjcF | -1.2 | -0.8 | hypothetical protein (NCBI) | compare |
| b0928 | aspC | -1.1 | -6.0 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b0723 | sdhA | -1.1 | -6.9 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b4505 | insX | -1.1 | -2.1 | predicted IS protein (RefSeq) | compare |
| b0817 | mntR | -1.1 | -4.1 | DNA-binding transcriptional regulator of mntH (NCBI) | compare |
| b4647 | mokA | -1.1 | -1.0 | no description | compare |
| b0438 | clpX | -1.1 | -6.7 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2504 | yfgG | -1.1 | -2.0 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b3977 | tyrU | -1.1 | -1.2 | tRNA-Tyr (NCBI) | compare |
| b4593 | ymgI | -1.1 | -0.9 | hypothetical protein (RefSeq) | compare |
| b2935 | tktA | -1.0 | -2.7 | transketolase 1, thiamin-binding (NCBI) | compare |
| b4128 | yjdK | -1.0 | -0.7 | hypothetical protein (NCBI) | compare |
| b0722 | sdhD | -1.0 | -3.0 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b0720 | gltA | -1.0 | -4.6 | citrate synthase (NCBI) | compare |
| b4590 | ybfK | -1.0 | -1.1 | hypothetical protein (RefSeq) | compare |
| b1235 | rssB | -1.0 | -6.0 | response regulator of RpoS (NCBI) | compare |
| b2318 | truA | -1.0 | -2.9 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1084 | rne | -0.9 | -4.2 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b3624 | rfaZ | -0.9 | -2.4 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1347 | ydaC | -0.9 | -0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b1785 | yeaI | -0.9 | -3.3 | predicted diguanylate cyclase (NCBI) | compare |
| b2567 | rnc | -0.9 | -1.1 | ribonuclease III (NCBI) | compare |
| b0088 | murD | -0.9 | -2.2 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b0401 | brnQ | -0.9 | -5.6 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b2313 | cvpA | -0.9 | -3.6 | membrane protein required for colicin V production (NCBI) | compare |
| b3238 | yhcN | -0.9 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b0242 | proB | -0.9 | -4.1 | gamma-glutamyl kinase (NCBI) | compare |
| b2528 | iscA | -0.9 | -1.8 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0721 | sdhC | -0.9 | -5.3 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b2501 | ppk | -0.9 | -5.7 | polyphosphate kinase (NCBI) | compare |
| b1506 | yneL | -0.9 | -1.2 | predicted transcriptional regulator (NCBI) | compare |
| b0439 | lon | -0.9 | -3.5 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0750 | nadA | -0.8 | -4.6 | quinolinate synthetase (NCBI) | compare |
| b2297 | pta | -0.8 | -0.6 | phosphate acetyltransferase (NCBI) | compare |
| b1984 | asnW | -0.8 | -1.2 | tRNA-Asn (NCBI) | compare |
| b3205 | yhbJ | -0.8 | -3.0 | hypothetical protein (NCBI) | compare |
| b1778 | yeaA | -0.8 | -1.8 | methionine sulfoxide reductase B (NCBI) | compare |
| b4451 | ryhB | -0.8 | -0.6 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2340 | sixA | -0.8 | -3.1 | phosphohistidine phosphatase (NCBI) | compare |
| b4535 | yniD | -0.8 | -1.1 | predicted protein (RefSeq) | compare |
| b0705 | ybfL | -0.8 | -0.5 | putative receptor protein (VIMSS) | compare |
| b2830 | nudH | -0.8 | -1.0 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3169 | nusA | -0.8 | -2.7 | transcription elongation factor NusA (NCBI) | compare |
| b1190 | dadX | -0.8 | -3.7 | alanine racemase (NCBI) | compare |
| b4435 | isrC | -0.8 | -1.7 | unknown RNA (NCBI) | compare |
| b1257 | yciE | -0.8 | -0.5 | hypothetical protein (NCBI) | compare |
| b1292 | sapC | -0.8 | -1.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1951 | rcsA | -0.8 | -1.6 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b2820 | recB | -0.8 | -1.5 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b4313 | fimE | -0.8 | -4.6 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1151 | ymfO | -0.8 | -3.8 | e14 prophage; conserved protein (RefSeq) | compare |
| b1290 | sapF | -0.8 | -1.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4596 | yciZ | -0.7 | -1.2 | hypothetical protein (RefSeq) | compare |
| b4215 | ytfI | -0.7 | -1.8 | hypothetical protein (NCBI) | compare |
| b0149 | mrcB | -0.7 | -5.7 | penicillin-binding protein 1b (NCBI) | compare |
| b3414 | gntY | -0.7 | -3.8 | predicted gluconate transport associated protein (NCBI) | compare |
| b3237 | argR | -0.7 | -2.9 | arginine repressor (NCBI) | compare |
| b2025 | hisF | -0.7 | -3.0 | imidazole glycerol phosphate synthase subunit HisF (NCBI) | compare |
| b1187 | fadR | -0.7 | -2.0 | fatty acid metabolism regulator (NCBI) | compare |
| b1524 | yneH | -0.7 | -0.9 | predicted glutaminase (NCBI) | compare |
| b4375 | prfC | -0.7 | -3.0 | peptide chain release factor 3 (NCBI) | compare |
| b2584 | yfiQ | -0.7 | -5.0 | fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) | compare |
| b4208 | cycA | -0.7 | -4.9 | D-alanine/D-serine/glycine transporter (NCBI) | compare |
| b4179 | vacB | -0.7 | -3.7 | putative enzyme (VIMSS) | compare |
| b1121 | ycfZ | -0.7 | -1.6 | predicted inner membrane protein (NCBI) | compare |
| b3290 | trkA | -0.7 | -1.8 | potassium transporter peripheral membrane component (NCBI) | compare |
| b4481 | rffT | -0.7 | -3.2 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b4039 | ubiC | -0.7 | -4.2 | chorismate lyase (VIMSS) | compare |
| b1293 | sapB | -0.7 | -1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1863 | ruvC | -0.7 | -1.4 | Holliday junction resolvase (NCBI) | compare |
| b1503 | ydeR | -0.7 | -2.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4480 | hdfR | -0.7 | -2.8 | transcriptional regulator HdfR (NCBI) | compare |
| b3204 | ptsN | -0.7 | -2.8 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b1109 | ndh | -0.7 | -3.1 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b4651 | yibW | -0.7 | -0.4 | no description | compare |
| b1502 | ydeQ | -0.7 | -1.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0658 | ybeX | -0.7 | -1.4 | predicteed ion transport (NCBI) | compare |
| b2822 | recC | -0.6 | -2.9 | exonuclease V (RecBCD complex), gamma chain (NCBI) | compare |
| b0428 | cyoE | -0.6 | -3.2 | protoheme IX farnesyltransferase (NCBI) | compare |
| b0585 | fes | -0.6 | -3.2 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b1576 | ydfD | -0.6 | -0.4 | Qin prophage; predicted protein (NCBI) | compare |
| b3281 | aroE | -0.6 | -5.1 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b0908 | aroA | -0.6 | -3.9 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b3728 | pstS | -0.6 | -2.1 | phosphate transporter subunit (NCBI) | compare |
| b1847 | yebF | -0.6 | -0.7 | predicted protein (RefSeq) | compare |
| b4191 | ulaR | -0.6 | -2.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4552 | yrhC | -0.6 | -0.6 | no description | compare |
| b0243 | proA | -0.6 | -4.1 | gamma-glutamyl phosphate reductase (NCBI) | compare |
| b0688 | pgm | -0.6 | -2.7 | phosphoglucomutase (NCBI) | compare |
| b4246 | pyrL | -0.6 | -1.0 | pyrBI operon leader peptide (NCBI) | compare |
| b0109 | nadC | -0.6 | -3.6 | nicotinate-nucleotide pyrophosphorylase (NCBI) | compare |
| b2912 | ygfA | -0.6 | -1.7 | putative ligase (VIMSS) | compare |
| b3623 | rfaK | -0.6 | -1.8 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b0707 | ybgA | -0.6 | -1.2 | hypothetical protein (NCBI) | compare |
| b2684 | mprA | -0.6 | -3.0 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3390 | aroK | -0.6 | -1.4 | shikimate kinase I (NCBI) | compare |
| b1936 | intG | -0.6 | -0.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3232 | yhcM | -0.6 | -3.9 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b2939 | yqgB | -0.6 | -0.9 | predicted protein (RefSeq) | compare |
| b3621 | rfaC | -0.6 | -2.9 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b2168 | fruK | -0.6 | -0.9 | 1-phosphofructokinase (NCBI) | compare |
| b3389 | aroB | -0.6 | -4.1 | 3-dehydroquinate synthase (NCBI) | compare |
| b3863 | polA | -0.6 | -0.8 | DNA polymerase I (NCBI) | compare |
| b4546 | ypeB | -0.6 | -0.9 | hypothetical protein (NCBI) | compare |
| b0990 | cspG | -0.6 | -0.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4551 | yheV | -0.6 | -1.2 | hypothetical protein (NCBI) | compare |
| b4431 | rprA | -0.6 | -1.3 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b3860 | dsbA | -0.6 | -3.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b2699 | recA | -0.6 | -0.9 | recombinase A (NCBI) | compare |
| b0957 | ompA | -0.6 | -1.8 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0080 | fruR | -0.5 | -2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3844 | fre | -0.5 | -2.7 | NAD(P)H-flavin reductase (NCBI) | compare |
| b3811 | xerC | -0.5 | -1.1 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b3062 | ttdB | -0.5 | -2.6 | L(+)-tartrate dehydratase (NCBI) | compare |
| b0588 | fepC | -0.5 | -3.6 | iron-enterobactin transporter subunit (NCBI) | compare |
| b1499 | ydeO | -0.5 | -0.3 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1304 | pspA | -0.5 | -1.4 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b1696 | ydiP | -0.5 | -1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1129 | phoQ | -0.5 | -1.4 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b2426 | ucpA | -0.5 | -1.2 | putative oxidoreductase (VIMSS) | compare |