| | gene | name | fitness | t score | description | |
|---|
| b2217 | rcsB | +1.5 | 11.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3512 | GadE | +1.4 | 4.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1493 | gadB | +1.4 | 2.2 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2096 | gatY | +1.3 | 8.4 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2156 | lysP | +1.2 | 9.9 | lysine transporter (NCBI) | compare |
| b2289 | lrhA | +1.1 | 8.5 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b4402 | yjjY | +1.1 | 2.2 | hypothetical protein (NCBI) | compare |
| b3375 | yhfR | +1.1 | 7.4 | putative transcriptional regulator (VIMSS) | compare |
| b4676 | yoaK | +1.0 | 1.2 | expressed protein (RefSeq) | compare |
| b3779 | gpp | +1.0 | 9.0 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b0955 | ycbZ | +1.0 | 7.3 | predicted peptidase (NCBI) | compare |
| b1492 | gadC | +1.0 | 5.9 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b2189 | proL | +1.0 | 3.2 | tRNA-Pro (NCBI) | compare |
| b2236 | yfaE | +0.9 | 2.0 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2659 | b2659 | +0.9 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b0092 | ddlB | +0.9 | 5.1 | D-alanylalanine synthetase (NCBI) | compare |
| b3495 | uspA | +0.9 | 7.5 | universal stress global response regulator (NCBI) | compare |
| b1159 | mcrA | +0.9 | 1.5 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b2285 | nuoE | +0.8 | 2.2 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1244 | oppB | +0.8 | 6.2 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2093 | gatB | +0.8 | 3.3 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b3745 | yieM | +0.8 | 7.6 | predicted von Willibrand factor containing protein (NCBI) | compare |
| b2287 | nuoB | +0.8 | 2.9 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3746 | yieN | +0.8 | 7.3 | putative 2-component regulator (VIMSS) | compare |
| b2095 | gatZ | +0.8 | 4.2 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b0435 | bolA | +0.8 | 5.4 | possible regulator of murein genes (VIMSS) | compare |
| b2502 | ppx | +0.8 | 5.3 | exopolyphosphatase (NCBI) | compare |
| b2531 | iscR | +0.8 | 2.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1247 | oppF | +0.8 | 5.8 | oligopeptide transporter subunit (NCBI) | compare |
| b2946 | yggJ | +0.7 | 3.7 | orf, hypothetical protein (VIMSS) | compare |
| b2911 | ssrS | +0.7 | 1.8 | 6S regulatory RNA (NCBI) | compare |
| b2916 | argP | +0.7 | 5.1 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b0191 | yaeJ | +0.7 | 4.2 | hypothetical protein (NCBI) | compare |
| b1243 | oppA | +0.7 | 4.8 | oligopeptide transporter subunit (NCBI) | compare |
| b3816 | corA | +0.7 | 5.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0564 | appY | +0.7 | 1.0 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b4133 | cadC | +0.7 | 6.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b4232 | fbp | +0.7 | 5.5 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b2743 | pcm | +0.7 | 3.7 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b2280 | nuoJ | +0.6 | 3.6 | NADH dehydrogenase subunit J (NCBI) | compare |
| b2277 | nuoM | +0.6 | 4.2 | NADH dehydrogenase subunit M (NCBI) | compare |
| b1246 | oppD | +0.6 | 5.4 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1476 | fdnI | +0.6 | 1.0 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1827 | kdgR | +0.6 | 2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0104 | guaC | +0.6 | 5.1 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b4503 | yafF | +0.6 | 0.9 | no description | compare |
| b1778 | yeaA | +0.6 | 1.5 | methionine sulfoxide reductase B (NCBI) | compare |
| b4699 | fnrS | +0.6 | 0.8 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3181 | greA | +0.6 | 2.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1658 | purR | +0.6 | 3.6 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b1793 | yoaF | +0.6 | 1.8 | conserved outer membrane protein (NCBI) | compare |
| b1245 | oppC | +0.6 | 4.6 | oligopeptide transporter subunit (NCBI) | compare |
| b2814 | metZ | +0.6 | 1.6 | tRNA-Met (NCBI) | compare |
| b2894 | xerD | +0.6 | 0.5 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b4596 | yciZ | +0.6 | 2.0 | hypothetical protein (RefSeq) | compare |
| b1465 | narV | +0.6 | 1.2 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b3870 | glnA | +0.6 | 2.0 | glutamine synthetase (NCBI) | compare |
| b4515 | ybgT | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b4603 | rseX | +0.6 | 0.8 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3146 | yraL | +0.6 | 3.7 | predicted methyltransferase (NCBI) | compare |
| b3166 | truB | +0.6 | 4.0 | tRNA pseudouridine synthase B (NCBI) | compare |
| b2809 | b2809 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2281 | nuoI | +0.5 | 1.9 | NADH dehydrogenase subunit I (NCBI) | compare |
| b3107 | yhaL | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3193 | yrbD | +0.5 | 4.5 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4041 | plsB | +0.5 | 1.6 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b3341 | rpsG | +0.5 | 1.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b2283 | nuoG | +0.5 | 3.8 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2284 | nuoF | +0.5 | 2.9 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1284 | yciT | +0.5 | 2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2433 | b2433 | +0.5 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4438 | cyaR | +0.5 | 2.2 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b0979 | appB | +0.5 | 3.0 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |
| b2047 | wcaJ | +0.5 | 3.3 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b2642 | yfjW | +0.5 | 0.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4313 | fimE | +0.5 | 3.9 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b0692 | potE | +0.5 | 3.3 | putrescine/proton symporter: putrescine/ornithine antiporter (NCBI) | compare |
| b2082 | ogrK | +0.5 | 1.5 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b0998 | torD | +0.5 | 1.1 | chaperone protein TorD (NCBI) | compare |
| b0014 | dnaK | +0.5 | 0.9 | molecular chaperone DnaK (NCBI) | compare |
| b2903 | gcvP | +0.5 | 4.3 | glycine dehydrogenase (NCBI) | compare |
| b1187 | fadR | +0.5 | 2.7 | fatty acid metabolism regulator (NCBI) | compare |
| b1642 | slyA | +0.5 | 1.7 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1307 | pspD | +0.5 | 1.6 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b0310 | ykgH | +0.5 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b4126 | yjdI | +0.5 | 4.0 | hypothetical protein (NCBI) | compare |
| b2637 | yfjT | +0.5 | 1.9 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2363 | yfdT | +0.5 | 1.8 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b0828 | iaaA | +0.5 | 1.9 | L-asparaginase (NCBI) | compare |
| b4062 | soxS | +0.5 | 2.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3516 | gadX | +0.5 | 4.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4222 | ytfP | +0.5 | 3.0 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | +0.5 | 1.1 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2282 | nuoH | +0.5 | 1.7 | NADH dehydrogenase subunit H (NCBI) | compare |
| b4511 | ybdZ | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2291 | yfbR | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b1685 | ydiH | +0.5 | 1.2 | predicted protein (RefSeq) | compare |
| b3206 | npr | +0.5 | 3.4 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2570 | rseC | +0.5 | 2.4 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b0617 | citD | +0.5 | 1.5 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b4363 | yjjB | +0.5 | 2.5 | conserved inner membrane protein (RefSeq) | compare |
| b1765 | ydjA | +0.5 | 0.8 | predicted oxidoreductase (NCBI) | compare |
| b3068 | ygjF | +0.5 | 2.1 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b0535 | fimZ | +0.5 | 2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3194 | yrbE | +0.5 | 3.7 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4527 | b1354 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0965 | b0965 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1615 | uidC | +0.4 | 2.5 | membrane-associated protein (VIMSS) | compare |
| b1536 | ydeI | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b2092 | gatC | +0.4 | 1.9 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b1829 | htpX | +0.4 | 2.8 | heat shock protein HtpX (NCBI) | compare |
| b0487 | cueR | +0.4 | 2.6 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b4541 | yehK | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1709 | btuD | +0.4 | 0.5 | vitamin B12-transporter ATPase (NCBI) | compare |
| b0001 | thrL | +0.4 | 1.9 | thr operon leader peptide (NCBI) | compare |
| b0990 | cspG | +0.4 | 0.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2421 | cysM | +0.4 | 2.2 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2741 | rpoS | +0.4 | 2.5 | RNA polymerase sigma factor (NCBI) | compare |
| b2666 | yqaE | +0.4 | 1.8 | predicted membrane protein (NCBI) | compare |
| b2094 | gatA | +0.4 | 3.3 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2471 | yffB | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b2195 | ccmG | +0.4 | 1.8 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b4406 | yaeP | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b2278 | nuoL | +0.4 | 2.8 | NADH dehydrogenase subunit L (NCBI) | compare |
| b2362 | yfdS | +0.4 | 2.0 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b2424 | cysU | +0.4 | 1.2 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b2279 | nuoK | +0.4 | 0.7 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3191 | yrbB | +0.4 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b1258 | yciF | +0.4 | 0.5 | hypothetical protein (NCBI) | compare |
| b4453 | ldrD | +0.4 | 1.1 | toxic polypeptide, small (NCBI) | compare |
| b1259 | yciG | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1348 | lar | +0.4 | 1.1 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2904 | gcvH | +0.4 | 1.5 | glycine cleavage system protein H (NCBI) | compare |
| b4571 | wbbL | +0.4 | 1.7 | no description | compare |
| b0746 | valZ | +0.4 | 1.1 | tRNA-Val (NCBI) | compare |
| b2203 | napB | +0.4 | 2.0 | cytochrome c-type protein (VIMSS) | compare |
| b2080 | b2080 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2646 | ypjF | +0.4 | 1.7 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b4011 | yjaA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1333 | uspE | +0.4 | 2.2 | stress-induced protein (NCBI) | compare |
| b2539 | hcaF | +0.4 | 2.0 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b1583 | ynfB | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b4151 | frdD | +0.4 | 2.1 | fumarate reductase subunit D (NCBI) | compare |
| b1289 | ycjD | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b3507 | dctR | +0.4 | 3.3 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b0636 | ybeA | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b4089 | rpiR | +0.4 | 3.2 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b1155 | ymfS | +0.4 | 2.0 | e14 prophage; predicted protein (NCBI) | compare |
| b1823 | cspC | +0.4 | 1.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b1394 | paaG | +0.4 | 1.6 | enoyl-CoA hydratase (NCBI) | compare |
| b1025 | ycdT | +0.4 | 0.8 | predicted diguanylate cyclase (NCBI) | compare |
| b4497 | yeeL | +0.4 | 0.8 | no description | compare |
| b2426 | ucpA | +0.4 | 1.3 | putative oxidoreductase (VIMSS) | compare |
| b4045 | yjbJ | +0.4 | 0.7 | predicted stress response protein (NCBI) | compare |
| b3119 | tdcR | +0.4 | 1.4 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1008 | ycdI | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | +0.4 | 0.9 | shikimate kinase I (NCBI) | compare |
| b0082 | mraW | +0.4 | 1.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1446 | ydcY | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b3195 | yrbF | +0.4 | 3.1 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2114 | metG | +0.4 | 1.1 | methionyl-tRNA synthetase (NCBI) | compare |
| b0018 | mokC | +0.4 | 0.8 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4369 | leuP | +0.4 | 0.8 | tRNA-Leu (NCBI) | compare |
| b4214 | cysQ | +0.4 | 3.1 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b3889 | yiiE | +0.4 | 1.2 | predicted transcriptional regulator (RefSeq) | compare |
| b1233 | ychJ | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1689 | b1689 | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1946 | fliN | +0.4 | 1.2 | flagellar motor switch protein (NCBI) | compare |
| b2988 | gss | +0.4 | 2.9 | fused glutathionylspermidine amidase/glutathionylspermidine synthetase (NCBI) | compare |
| b0977 | hyaF | +0.4 | 1.7 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b1562 | hokD | +0.3 | 1.4 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b1189 | dadA | +0.3 | 2.1 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b1317 | ycjU | +0.3 | 1.5 | predicted beta-phosphoglucomutase (NCBI) | compare |
| b3892 | fdoI | +0.3 | 2.8 | formate dehydrogenase-O, cytochrome b556 subunit (NCBI) | compare |
| b1156 | tfaE | +0.3 | 2.2 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b2186 | yejK | +0.3 | 3.0 | nucleoid-associated protein NdpA (NCBI) | compare |
| b1959 | yedA | +0.3 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b2906 | visC | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b1582 | ynfA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4127 | yjdJ | +0.3 | 2.7 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b0164 | yaeI | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0809 | glnQ | +0.3 | 2.1 | glutamine ABC transporter ATP-binding protein (NCBI) | compare |
| b1731 | cedA | +0.3 | 1.6 | cell division modulator (RefSeq) | compare |
| b0931 | pncB | +0.3 | 1.8 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b2580 | ung | +0.3 | 1.9 | uracil-DNA glycosylase (NCBI) | compare |
| b1868 | yecE | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1961 | dcm | +0.3 | 1.0 | DNA cytosine methylase (NCBI) | compare |
| b1150 | ymfR | +0.3 | 0.6 | e14 prophage; predicted protein (NCBI) | compare |
| b2197 | ccmE | +0.3 | 1.9 | periplasmic heme chaperone (NCBI) | compare |
| b2436 | hemF | +0.3 | 1.7 | coproporphyrinogen III oxidase (NCBI) | compare |
| b3192 | yrbC | +0.3 | 2.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3672 | ivbL | +0.3 | 1.5 | ilvB operon leader peptide (NCBI) | compare |
| b1785 | yeaI | +0.3 | 1.3 | predicted diguanylate cyclase (NCBI) | compare |
| b2439 | eutL | +0.3 | 2.1 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b4391 | yjjK | +0.3 | 2.6 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1607 | ydgC | +0.3 | 0.7 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3378 | yhfU | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1941 | fliI | +0.3 | 2.3 | flagellum-specific ATP synthase (NCBI) | compare |
| b3239 | yhcO | +0.3 | 1.4 | predicted barnase inhibitor (NCBI) | compare |