| | gene | name | fitness | t score | description | |
|---|
| b2498 | upp | +2.3 | 4.8 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2217 | rcsB | +1.5 | 10.7 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3390 | aroK | +1.3 | 3.9 | shikimate kinase I (NCBI) | compare |
| b4704 | arrS | +1.3 | 0.6 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b2189 | proL | +1.3 | 4.5 | tRNA-Pro (NCBI) | compare |
| b2156 | lysP | +1.2 | 10.2 | lysine transporter (NCBI) | compare |
| b2096 | gatY | +1.2 | 7.5 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2289 | lrhA | +1.2 | 9.3 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b3375 | yhfR | +1.0 | 7.9 | putative transcriptional regulator (VIMSS) | compare |
| b2093 | gatB | +1.0 | 6.6 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b2285 | nuoE | +1.0 | 3.9 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1492 | gadC | +1.0 | 5.8 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b3512 | GadE | +1.0 | 3.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1882 | cheY | +1.0 | 0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b0014 | dnaK | +0.9 | 3.1 | molecular chaperone DnaK (NCBI) | compare |
| b0955 | ycbZ | +0.9 | 7.5 | predicted peptidase (NCBI) | compare |
| b3779 | gpp | +0.9 | 8.1 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b0191 | yaeJ | +0.9 | 5.1 | hypothetical protein (NCBI) | compare |
| b1244 | oppB | +0.9 | 6.6 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2095 | gatZ | +0.9 | 4.6 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b2916 | argP | +0.8 | 5.4 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b3745 | yieM | +0.8 | 7.6 | predicted von Willibrand factor containing protein (NCBI) | compare |
| b3746 | yieN | +0.8 | 7.1 | putative 2-component regulator (VIMSS) | compare |
| b3495 | uspA | +0.8 | 7.1 | universal stress global response regulator (NCBI) | compare |
| b3816 | corA | +0.8 | 6.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0357 | yaiN | +0.8 | 2.7 | putative alpha helix chain (VIMSS) | compare |
| b2236 | yfaE | +0.7 | 3.5 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3181 | greA | +0.7 | 3.9 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4699 | fnrS | +0.7 | 1.1 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2911 | ssrS | +0.7 | 2.0 | 6S regulatory RNA (NCBI) | compare |
| b2502 | ppx | +0.7 | 6.2 | exopolyphosphatase (NCBI) | compare |
| b2282 | nuoH | +0.7 | 2.8 | NADH dehydrogenase subunit H (NCBI) | compare |
| b1243 | oppA | +0.7 | 4.6 | oligopeptide transporter subunit (NCBI) | compare |
| b1259 | yciG | +0.7 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1247 | oppF | +0.7 | 4.8 | oligopeptide transporter subunit (NCBI) | compare |
| b2904 | gcvH | +0.7 | 2.4 | glycine cleavage system protein H (NCBI) | compare |
| b0990 | cspG | +0.7 | 0.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4232 | fbp | +0.7 | 5.3 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b4133 | cadC | +0.7 | 6.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1727 | yniC | +0.7 | 2.4 | predicted hydrolase (NCBI) | compare |
| b2946 | yggJ | +0.7 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1187 | fadR | +0.7 | 3.5 | fatty acid metabolism regulator (NCBI) | compare |
| b1735 | chbR | +0.6 | 3.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0104 | guaC | +0.6 | 5.1 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b2743 | pcm | +0.6 | 2.7 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b1245 | oppC | +0.6 | 4.9 | oligopeptide transporter subunit (NCBI) | compare |
| b1493 | gadB | +0.6 | 0.9 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b0092 | ddlB | +0.6 | 3.0 | D-alanylalanine synthetase (NCBI) | compare |
| b1874 | cutC | +0.6 | 0.9 | copper homeostasis protein (NCBI) | compare |
| b3516 | gadX | +0.6 | 5.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2080 | b2080 | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0881 | clpS | +0.6 | 2.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b0247 | ykfG | +0.6 | 1.3 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2642 | yfjW | +0.6 | 0.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3206 | npr | +0.6 | 3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4598 | yncL | +0.6 | 2.1 | hypothetical protein (RefSeq) | compare |
| b2421 | cysM | +0.6 | 3.0 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b4126 | yjdI | +0.6 | 4.4 | hypothetical protein (NCBI) | compare |
| b2277 | nuoM | +0.5 | 3.3 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2659 | b2659 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1556 | b1556 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1348 | lar | +0.5 | 1.4 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b3166 | truB | +0.5 | 3.6 | tRNA pseudouridine synthase B (NCBI) | compare |
| b0746 | valZ | +0.5 | 1.7 | tRNA-Val (NCBI) | compare |
| b2531 | iscR | +0.5 | 1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2012 | yeeD | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b4551 | yheV | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b3146 | yraL | +0.5 | 3.5 | predicted methyltransferase (NCBI) | compare |
| b2783 | chpR | +0.5 | 1.1 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b4408 | csrB | +0.5 | 2.5 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b1148 | ymfM | +0.5 | 2.7 | e14 prophage; predicted protein (NCBI) | compare |
| b0435 | bolA | +0.5 | 3.0 | possible regulator of murein genes (VIMSS) | compare |
| b2903 | gcvP | +0.5 | 4.3 | glycine dehydrogenase (NCBI) | compare |
| b4222 | ytfP | +0.5 | 3.6 | hypothetical protein (NCBI) | compare |
| b0730 | mngR | +0.5 | 1.2 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4127 | yjdJ | +0.5 | 3.7 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2811 | ygdK | +0.5 | 2.2 | predicted Fe-S metabolism protein (NCBI) | compare |
| b2283 | nuoG | +0.5 | 3.4 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2280 | nuoJ | +0.5 | 2.5 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1658 | purR | +0.5 | 2.6 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b1607 | ydgC | +0.5 | 1.1 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3193 | yrbD | +0.5 | 3.8 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4214 | cysQ | +0.5 | 3.7 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b1582 | ynfA | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b2284 | nuoF | +0.5 | 2.7 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1503 | ydeR | +0.5 | 2.0 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2618 | b2618 | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1429 | tehA | +0.5 | 0.9 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b2504 | yfgG | +0.5 | 1.0 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1573 | ydfC | +0.5 | 1.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b4406 | yaeP | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b2094 | gatA | +0.4 | 3.4 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b4294 | insA-7 | +0.4 | 1.9 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b1804 | rnd | +0.4 | 1.8 | ribonuclease D (NCBI) | compare |
| b1380 | ldhA | +0.4 | 2.0 | D-lactate dehydrogenase (NCBI) | compare |
| b3382 | yhfY | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1246 | oppD | +0.4 | 3.2 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b2092 | gatC | +0.4 | 1.9 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b3739 | atpI | +0.4 | 1.8 | membrane-bound ATP synthase, dispensable protein, affects expression of atpB (VIMSS) | compare |
| b4522 | yciX_1 | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b4116 | adiY | +0.4 | 3.8 | DNA-binding transcriptional activator (NCBI) | compare |
| b2346 | vacJ | +0.4 | 3.0 | predicted lipoprotein (NCBI) | compare |
| b4403 | yjtD | +0.4 | 2.4 | predicted rRNA methyltransferase (NCBI) | compare |
| b4653 | yicT | +0.4 | 0.9 | no description | compare |
| b0977 | hyaF | +0.4 | 2.4 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b4546 | ypeB | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1390 | paaC | +0.4 | 2.8 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b2023 | hisH | +0.4 | 2.7 | imidazole glycerol phosphate synthase subunit HisH (NCBI) | compare |
| b3195 | yrbF | +0.4 | 3.3 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1976 | b1976 | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1829 | htpX | +0.4 | 2.1 | heat shock protein HtpX (NCBI) | compare |
| b2674 | nrdI | +0.4 | 2.7 | hypothetical protein (NCBI) | compare |
| b3207 | yrbL | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1186 | nhaB | +0.4 | 2.6 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b0294 | ykgK | +0.4 | 1.9 | predicted regulator (NCBI) | compare |
| b0706 | ybfD | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b4233 | mpl | +0.4 | 3.3 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | compare |
| b0692 | potE | +0.4 | 2.5 | putrescine/proton symporter: putrescine/ornithine antiporter (NCBI) | compare |
| b2276 | nuoN | +0.4 | 2.2 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b3194 | yrbE | +0.4 | 3.0 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0426 | yajQ | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4592 | yccB | +0.4 | 1.0 | hypothetical protein (RefSeq) | compare |
| b1394 | paaG | +0.4 | 2.1 | enoyl-CoA hydratase (NCBI) | compare |
| b4631 | ykgQ | +0.4 | 1.0 | no description | compare |
| b2919 | ygfG | +0.4 | 2.7 | putative enzyme (VIMSS) | compare |
| b0974 | hyaC | +0.4 | 1.5 | hydrogenase 1, b-type cytochrome subunit (NCBI) | compare |
| b3191 | yrbB | +0.4 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b4003 | zraS | +0.4 | 2.8 | sensory histidine kinase in two-component regulatory system with ZraR (NCBI) | compare |
| b2288 | nuoA | +0.4 | 1.3 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b1557 | cspB | +0.4 | 1.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b1849 | purT | +0.4 | 2.0 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b1007 | b1007 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1992 | cobS | +0.4 | 1.2 | cobalamin synthase (NCBI) | compare |
| b2279 | nuoK | +0.4 | 0.7 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2445 | yffN | +0.4 | 1.2 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b0710 | ybgI | +0.4 | 1.7 | conserved metal-binding protein (NCBI) | compare |
| b4418 | sraB | +0.4 | 0.6 | unknown RNA (NCBI) | compare |
| b1446 | ydcY | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +0.4 | 3.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3068 | ygjF | +0.4 | 2.0 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b0866 | ybjQ | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b1156 | tfaE | +0.4 | 2.0 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b1284 | yciT | +0.4 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0850 | ybjC | +0.4 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b3427 | yzgL | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3810 | yigA | +0.3 | 2.8 | hypothetical protein (NCBI) | compare |
| b1315 | ycjS | +0.3 | 2.3 | predicted oxidoreductase, NADH-binding (NCBI) | compare |
| b0494 | tesA | +0.3 | 2.0 | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) | compare |
| b3658 | selC | +0.3 | 1.4 | tRNA-Sec (NCBI) | compare |
| b1475 | fdnH | +0.3 | 2.0 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b0615 | citF | +0.3 | 1.9 | citrate lyase, citrate-ACP transferase (alpha) subunit (NCBI) | compare |
| b2622 | intA | +0.3 | 2.5 | CP4-57 prophage; integrase (NCBI) | compare |
| b0636 | ybeA | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1518 | lsrG | +0.3 | 0.9 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1824 | yobF | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b2286 | nuoC | +0.3 | 2.1 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2291 | yfbR | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0082 | mraW | +0.3 | 1.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1742 | b1742 | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1103 | ycfF | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b4089 | rpiR | +0.3 | 2.7 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b0502 | ylbG | +0.3 | 1.1 | no description | compare |
| b1827 | kdgR | +0.3 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0473 | htpG | +0.3 | 2.7 | heat shock protein 90 (NCBI) | compare |
| b3507 | dctR | +0.3 | 2.9 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b4011 | yjaA | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b2281 | nuoI | +0.3 | 1.2 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0013 | yaaI | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b4513 | kdpF | +0.3 | 1.4 | potassium ion accessory transporter subunit (NCBI) | compare |
| b0618 | citC | +0.3 | 2.3 | citrate lyase synthetase (citrate (pro-3S)-lyase ligase (VIMSS) | compare |
| b0755 | gpmA | +0.3 | 2.1 | phosphoglyceromutase (NCBI) | compare |
| b0471 | ybaB | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b1025 | ycdT | +0.3 | 0.6 | predicted diguanylate cyclase (NCBI) | compare |
| b2471 | yffB | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1642 | slyA | +0.3 | 1.0 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3688 | yidQ | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2003 | yeeT | +0.3 | 1.3 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b1575 | dicB | +0.3 | 0.5 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b3192 | yrbC | +0.3 | 2.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3397 | nudE | +0.3 | 2.4 | ADP-ribose diphosphatase (NCBI) | compare |
| b0533 | sfmH | +0.3 | 2.1 | predicted fimbrial-like adhesin protein (RefSeq) | compare |
| b0375 | yaiV | +0.3 | 1.7 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1242 | ychE | +0.3 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b1696 | ydiP | +0.3 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1778 | yeaA | +0.3 | 1.0 | methionine sulfoxide reductase B (NCBI) | compare |
| b2437 | yfeG | +0.3 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2278 | nuoL | +0.3 | 2.3 | NADH dehydrogenase subunit L (NCBI) | compare |
| b3107 | yhaL | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1343 | dbpA | +0.3 | 1.9 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b3341 | rpsG | +0.3 | 0.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b4391 | yjjK | +0.3 | 2.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2814 | metZ | +0.3 | 0.8 | tRNA-Met (NCBI) | compare |
| b1773 | ydjI | +0.3 | 0.9 | predicted aldolase (NCBI) | compare |
| b1743 | spy | +0.3 | 2.3 | envelope stress induced periplasmic protein (NCBI) | compare |
| b1165 | ymgA | +0.3 | 0.3 | hypothetical protein (NCBI) | compare |
| b2050 | wcaI | +0.3 | 1.8 | predicted glycosyl transferase (NCBI) | compare |
| b2679 | proX | +0.3 | 1.9 | glycine betaine transporter subunit (NCBI) | compare |
| b1860 | ruvB | +0.3 | 0.2 | Holliday junction DNA helicase B (NCBI) | compare |
| b0213 | yafS | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0888 | trxB | +0.3 | 1.0 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |