| | gene | name | fitness | t score | description | |
|---|
| b3390 | aroK | +1.6 | 5.0 | shikimate kinase I (NCBI) | compare |
| b2217 | rcsB | +1.6 | 11.4 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2289 | lrhA | +1.4 | 9.6 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b0564 | appY | +1.3 | 2.3 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2096 | gatY | +1.3 | 9.6 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b4699 | fnrS | +1.2 | 2.0 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3512 | GadE | +1.2 | 4.7 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b3375 | yhfR | +1.1 | 8.5 | putative transcriptional regulator (VIMSS) | compare |
| b2498 | upp | +1.1 | 3.4 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2156 | lysP | +1.1 | 9.3 | lysine transporter (NCBI) | compare |
| b1291 | sapD | +1.1 | 1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0191 | yaeJ | +1.0 | 5.4 | hypothetical protein (NCBI) | compare |
| b3779 | gpp | +1.0 | 8.9 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b1370 | insH-5 | +1.0 | 3.4 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b2093 | gatB | +1.0 | 5.6 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b1765 | ydjA | +1.0 | 1.8 | predicted oxidoreductase (NCBI) | compare |
| b0955 | ycbZ | +0.9 | 7.4 | predicted peptidase (NCBI) | compare |
| b1492 | gadC | +0.9 | 5.6 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b4402 | yjjY | +0.9 | 1.4 | hypothetical protein (NCBI) | compare |
| b0232 | yafN | +0.9 | 1.0 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0247 | ykfG | +0.9 | 2.2 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b3745 | yieM | +0.8 | 7.8 | predicted von Willibrand factor containing protein (NCBI) | compare |
| b2095 | gatZ | +0.8 | 5.7 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b3341 | rpsG | +0.8 | 1.8 | 30S ribosomal protein S7 (NCBI) | compare |
| b3495 | uspA | +0.8 | 6.9 | universal stress global response regulator (NCBI) | compare |
| b1243 | oppA | +0.8 | 5.9 | oligopeptide transporter subunit (NCBI) | compare |
| b4701 | sokX | +0.8 | 0.9 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3181 | greA | +0.8 | 5.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2285 | nuoE | +0.8 | 2.9 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1247 | oppF | +0.8 | 5.9 | oligopeptide transporter subunit (NCBI) | compare |
| b2284 | nuoF | +0.8 | 4.3 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b2281 | nuoI | +0.8 | 3.2 | NADH dehydrogenase subunit I (NCBI) | compare |
| b2502 | ppx | +0.8 | 5.9 | exopolyphosphatase (NCBI) | compare |
| b2904 | gcvH | +0.8 | 2.7 | glycine cleavage system protein H (NCBI) | compare |
| b4133 | cadC | +0.8 | 7.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b2189 | proL | +0.8 | 2.5 | tRNA-Pro (NCBI) | compare |
| b3746 | yieN | +0.8 | 6.8 | putative 2-component regulator (VIMSS) | compare |
| b0746 | valZ | +0.8 | 2.9 | tRNA-Val (NCBI) | compare |
| b0218 | yafU | +0.8 | 3.1 | predicted inner membrane protein (RefSeq) | compare |
| b0092 | ddlB | +0.7 | 3.7 | D-alanylalanine synthetase (NCBI) | compare |
| b1642 | slyA | +0.7 | 2.5 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2911 | ssrS | +0.7 | 1.8 | 6S regulatory RNA (NCBI) | compare |
| b2277 | nuoM | +0.7 | 4.2 | NADH dehydrogenase subunit M (NCBI) | compare |
| b1187 | fadR | +0.7 | 4.2 | fatty acid metabolism regulator (NCBI) | compare |
| b2287 | nuoB | +0.7 | 3.4 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1823 | cspC | +0.7 | 3.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b2916 | argP | +0.7 | 4.5 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b2659 | b2659 | +0.7 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b4232 | fbp | +0.7 | 5.6 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b4503 | yafF | +0.7 | 1.0 | no description | compare |
| b4222 | ytfP | +0.7 | 4.2 | hypothetical protein (NCBI) | compare |
| b1950 | fliR | +0.6 | 2.9 | flagellar biosynthesis protein R (NCBI) | compare |
| b4313 | fimE | +0.6 | 5.3 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b2283 | nuoG | +0.6 | 4.6 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b3816 | corA | +0.6 | 4.9 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0435 | bolA | +0.6 | 4.5 | possible regulator of murein genes (VIMSS) | compare |
| b1658 | purR | +0.6 | 4.8 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0104 | guaC | +0.6 | 4.7 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b1572 | ydfB | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1244 | oppB | +0.6 | 4.7 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b1258 | yciF | +0.6 | 0.8 | hypothetical protein (NCBI) | compare |
| b0617 | citD | +0.6 | 2.0 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2814 | metZ | +0.6 | 1.6 | tRNA-Met (NCBI) | compare |
| b1332 | ynaJ | +0.6 | 0.6 | predicted inner membrane protein (NCBI) | compare |
| b1790 | yeaM | +0.6 | 2.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1648 | b1648 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4522 | yciX_1 | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b1156 | tfaE | +0.5 | 2.8 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b2286 | nuoC | +0.5 | 2.6 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3166 | truB | +0.5 | 4.3 | tRNA pseudouridine synthase B (NCBI) | compare |
| b4511 | ybdZ | +0.5 | 2.7 | hypothetical protein (NCBI) | compare |
| b2280 | nuoJ | +0.5 | 3.2 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3516 | gadX | +0.5 | 4.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2051 | wcaH | +0.5 | 1.4 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b3193 | yrbD | +0.5 | 4.2 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1685 | ydiH | +0.5 | 1.3 | predicted protein (RefSeq) | compare |
| b1246 | oppD | +0.5 | 3.6 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b2743 | pcm | +0.5 | 3.1 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b0082 | mraW | +0.5 | 1.8 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4126 | yjdI | +0.5 | 4.0 | hypothetical protein (NCBI) | compare |
| b0494 | tesA | +0.5 | 3.0 | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) | compare |
| b0535 | fimZ | +0.5 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2288 | nuoA | +0.5 | 2.0 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0636 | ybeA | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b4369 | leuP | +0.5 | 0.9 | tRNA-Leu (NCBI) | compare |
| b1639 | ydhA | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3146 | yraL | +0.5 | 3.0 | predicted methyltransferase (NCBI) | compare |
| b1362 | rzpR | +0.5 | 2.0 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1689 | b1689 | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4519 | icdC | +0.4 | 1.9 | no description | compare |
| b2946 | yggJ | +0.4 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b2110 | yehC | +0.4 | 0.9 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2939 | yqgB | +0.4 | 0.9 | predicted protein (RefSeq) | compare |
| b1493 | gadB | +0.4 | 0.6 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1245 | oppC | +0.4 | 3.2 | oligopeptide transporter subunit (NCBI) | compare |
| b1186 | nhaB | +0.4 | 3.1 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b4089 | rpiR | +0.4 | 3.7 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b1360 | ydaV | +0.4 | 0.8 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b4541 | yehK | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b1284 | yciT | +0.4 | 2.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2092 | gatC | +0.4 | 2.0 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b0580 | ybdJ | +0.4 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b3074 | ygjH | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1394 | paaG | +0.4 | 1.6 | enoyl-CoA hydratase (NCBI) | compare |
| b1557 | cspB | +0.4 | 1.5 | Qin prophage; cold shock protein (NCBI) | compare |
| b2637 | yfjT | +0.4 | 2.1 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b0018 | mokC | +0.4 | 0.9 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0864 | artP | +0.4 | 1.9 | arginine transporter subunit (NCBI) | compare |
| b0473 | htpG | +0.4 | 3.3 | heat shock protein 90 (NCBI) | compare |
| b1400 | paaY | +0.4 | 1.5 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b3870 | glnA | +0.4 | 1.6 | glutamine synthetase (NCBI) | compare |
| b3658 | selC | +0.4 | 1.9 | tRNA-Sec (NCBI) | compare |
| b3810 | yigA | +0.4 | 3.1 | hypothetical protein (NCBI) | compare |
| b2642 | yfjW | +0.4 | 0.7 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2282 | nuoH | +0.4 | 1.7 | NADH dehydrogenase subunit H (NCBI) | compare |
| b1959 | yedA | +0.4 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b0862 | artQ | +0.4 | 2.3 | arginine transporter subunit (NCBI) | compare |
| b4214 | cysQ | +0.4 | 3.1 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b2903 | gcvP | +0.4 | 3.4 | glycine dehydrogenase (NCBI) | compare |
| b2531 | iscR | +0.4 | 0.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1582 | ynfA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2708 | gutQ | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1242 | ychE | +0.4 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b4642 | yoeD | +0.4 | 1.2 | no description | compare |
| b0927 | ycbL | +0.4 | 1.9 | predicted metal-binding enzyme (NCBI) | compare |
| b2225 | yfaP | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b2824 | ygdB | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0881 | clpS | +0.4 | 1.0 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b0289 | yagV | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4543 | ypaA | +0.4 | 1.7 | predicted protein (NCBI) | compare |
| b2258 | b2258 | +0.4 | 0.9 | putative transport/receptor protein (VIMSS) | compare |
| b2620 | smpB | +0.4 | 0.5 | SsrA-binding protein (NCBI) | compare |
| b2346 | vacJ | +0.4 | 2.6 | predicted lipoprotein (NCBI) | compare |
| b1431 | ydcL | +0.4 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b2634 | yfjR | +0.4 | 1.4 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0014 | dnaK | +0.4 | 1.0 | molecular chaperone DnaK (NCBI) | compare |
| b4041 | plsB | +0.4 | 1.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2829 | ptsP | +0.4 | 3.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b0251 | yafY | +0.4 | 1.7 | CP4-6 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0556 | rzpD | +0.4 | 1.4 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b1333 | uspE | +0.4 | 1.5 | stress-induced protein (NCBI) | compare |
| b4403 | yjtD | +0.4 | 2.5 | predicted rRNA methyltransferase (NCBI) | compare |
| b1183 | umuD | +0.3 | 0.8 | DNA polymerase V, subunit D (NCBI) | compare |
| b2421 | cysM | +0.3 | 2.0 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b3443 | yrhA | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1814 | sdaA | +0.3 | 1.5 | L-serine deaminase I (NCBI) | compare |
| b3280 | yrdB | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b0852 | rimK | +0.3 | 2.1 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0618 | citC | +0.3 | 2.5 | citrate lyase synthetase (citrate (pro-3S)-lyase ligase (VIMSS) | compare |
| b3206 | npr | +0.3 | 2.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1709 | btuD | +0.3 | 0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2094 | gatA | +0.3 | 2.1 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1418 | cybB | +0.3 | 0.9 | cytochrome b(561) (VIMSS) | compare |
| b4538 | yoeF | +0.3 | 1.1 | hypothetical protein (RefSeq) | compare |
| b4552 | yrhC | +0.3 | 0.6 | no description | compare |
| b1612 | fumA | +0.3 | 1.6 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b4633 | xisD | +0.3 | 1.6 | no description | compare |
| b0863 | artI | +0.3 | 1.7 | arginine transporter subunit (NCBI) | compare |
| b2734 | pphB | +0.3 | 1.8 | serine/threonine-specific protein phosphatase 2 (NCBI) | compare |
| b4068 | yjcH | +0.3 | 1.4 | required for glycolate transport, with actP (from data) | compare |
| b1960 | vsr | +0.3 | 1.9 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1840 | yebZ | +0.3 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b0778 | bioD | +0.3 | 1.3 | dethiobiotin synthetase (NCBI) | compare |
| b2236 | yfaE | +0.3 | 1.5 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3397 | nudE | +0.3 | 2.5 | ADP-ribose diphosphatase (NCBI) | compare |
| b0840 | deoR | +0.3 | 2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1883 | cheB | +0.3 | 2.2 | chemotaxis-specific methylesterase (NCBI) | compare |
| b3192 | yrbC | +0.3 | 2.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4337 | yjiO | +0.3 | 2.4 | multidrug efflux system protein (NCBI) | compare |
| b0364 | yaiS | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0952 | ymbA | +0.3 | 2.2 | conserved protein (RefSeq) | compare |
| b0710 | ybgI | +0.3 | 1.7 | conserved metal-binding protein (NCBI) | compare |
| b4391 | yjjK | +0.3 | 2.4 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b2812 | ygdL | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b1231 | tyrT | +0.3 | 0.6 | tRNA-Tyr (NCBI) | compare |
| b3636 | rpmG | +0.3 | 0.9 | 50S ribosomal protein L33 (NCBI) | compare |
| b1829 | htpX | +0.3 | 2.3 | heat shock protein HtpX (NCBI) | compare |
| b2278 | nuoL | +0.3 | 2.2 | NADH dehydrogenase subunit L (NCBI) | compare |
| b2005 | yeeV | +0.3 | 1.6 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1261 | trpB | +0.3 | 1.4 | tryptophan synthase subunit beta (NCBI) | compare |
| b0013 | yaaI | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3191 | yrbB | +0.3 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1921 | fliZ | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0340 | cynS | +0.3 | 1.5 | cyanate hydratase (NCBI) | compare |
| b4207 | fklB | +0.3 | 2.1 | FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (VIMSS) | compare |
| b1563 | relE | +0.3 | 0.7 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b4536 | yobH | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b4233 | mpl | +0.3 | 2.6 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | compare |
| b0546 | ybcM | +0.3 | 1.7 | DLP12 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1824 | yobF | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1841 | yobA | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b2212 | alkB | +0.3 | 1.4 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b0706 | ybfD | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b0931 | pncB | +0.3 | 1.8 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b4598 | yncL | +0.3 | 1.0 | hypothetical protein (RefSeq) | compare |
| b3195 | yrbF | +0.3 | 2.5 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1103 | ycfF | +0.3 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b4097 | phnK | +0.3 | 1.9 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4406 | yaeP | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |