| | gene | name | fitness | t score | description | |
|---|
| b3341 | rpsG | +1.6 | 3.9 | 30S ribosomal protein S7 (NCBI) | compare |
| b2217 | rcsB | +1.5 | 10.1 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3390 | aroK | +1.5 | 4.1 | shikimate kinase I (NCBI) | compare |
| b3979 | thrT | +1.4 | 0.9 | tRNA-Thr (NCBI) | compare |
| b2289 | lrhA | +1.3 | 9.4 | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes (NCBI) | compare |
| b2642 | yfjW | +1.2 | 2.5 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3512 | GadE | +1.2 | 4.7 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2096 | gatY | +1.1 | 6.0 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1361 | ydaW | +1.1 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2189 | proL | +1.0 | 3.6 | tRNA-Pro (NCBI) | compare |
| b2156 | lysP | +1.0 | 9.0 | lysine transporter (NCBI) | compare |
| b2285 | nuoE | +1.0 | 3.7 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3779 | gpp | +1.0 | 9.2 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b2934 | cmtB | +1.0 | 1.3 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1332 | ynaJ | +1.0 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b2279 | nuoK | +1.0 | 1.9 | NADH dehydrogenase subunit K (NCBI) | compare |
| b4699 | fnrS | +1.0 | 1.5 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3375 | yhfR | +1.0 | 6.9 | putative transcriptional regulator (VIMSS) | compare |
| b3183 | obgE | +1.0 | 1.6 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b1492 | gadC | +0.9 | 5.5 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b2093 | gatB | +0.9 | 4.9 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b2853 | ygeI | +0.9 | 0.6 | hypothetical protein (NCBI) | compare |
| b3181 | greA | +0.9 | 5.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2939 | yqgB | +0.9 | 2.4 | predicted protein (RefSeq) | compare |
| b1950 | fliR | +0.9 | 3.9 | flagellar biosynthesis protein R (NCBI) | compare |
| b1243 | oppA | +0.9 | 6.2 | oligopeptide transporter subunit (NCBI) | compare |
| b3495 | uspA | +0.9 | 7.5 | universal stress global response regulator (NCBI) | compare |
| b2281 | nuoI | +0.9 | 3.0 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0955 | ycbZ | +0.8 | 6.3 | predicted peptidase (NCBI) | compare |
| b1465 | narV | +0.8 | 1.3 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b2502 | ppx | +0.8 | 5.6 | exopolyphosphatase (NCBI) | compare |
| b3745 | yieM | +0.8 | 7.4 | predicted von Willibrand factor containing protein (NCBI) | compare |
| b2236 | yfaE | +0.8 | 2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1244 | oppB | +0.8 | 5.5 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2916 | argP | +0.8 | 5.1 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b2946 | yggJ | +0.8 | 4.2 | orf, hypothetical protein (VIMSS) | compare |
| b3746 | yieN | +0.8 | 6.9 | putative 2-component regulator (VIMSS) | compare |
| b2531 | iscR | +0.8 | 1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1493 | gadB | +0.8 | 1.1 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2095 | gatZ | +0.7 | 6.3 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b3816 | corA | +0.7 | 5.6 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0092 | ddlB | +0.7 | 4.6 | D-alanylalanine synthetase (NCBI) | compare |
| b4133 | cadC | +0.7 | 6.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b4503 | yafF | +0.7 | 1.1 | no description | compare |
| b2277 | nuoM | +0.7 | 4.6 | NADH dehydrogenase subunit M (NCBI) | compare |
| b1346 | ydaQ | +0.7 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3107 | yhaL | +0.7 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4313 | fimE | +0.7 | 5.4 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b4041 | plsB | +0.7 | 2.3 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1778 | yeaA | +0.7 | 2.0 | methionine sulfoxide reductase B (NCBI) | compare |
| b4451 | ryhB | +0.7 | 1.3 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b0191 | yaeJ | +0.7 | 2.9 | hypothetical protein (NCBI) | compare |
| b1642 | slyA | +0.7 | 1.9 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4232 | fbp | +0.7 | 5.5 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b0746 | valZ | +0.7 | 2.8 | tRNA-Val (NCBI) | compare |
| b0247 | ykfG | +0.7 | 1.5 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b0104 | guaC | +0.7 | 4.5 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b0435 | bolA | +0.6 | 3.6 | possible regulator of murein genes (VIMSS) | compare |
| b1648 | b1648 | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4592 | yccB | +0.6 | 2.0 | hypothetical protein (RefSeq) | compare |
| b1025 | ycdT | +0.6 | 1.2 | predicted diguanylate cyclase (NCBI) | compare |
| b0014 | dnaK | +0.6 | 2.1 | molecular chaperone DnaK (NCBI) | compare |
| b0502 | ylbG | +0.6 | 2.0 | no description | compare |
| b2286 | nuoC | +0.6 | 3.8 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b1518 | lsrG | +0.6 | 1.5 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b0218 | yafU | +0.6 | 2.2 | predicted inner membrane protein (RefSeq) | compare |
| b3166 | truB | +0.6 | 4.1 | tRNA pseudouridine synthase B (NCBI) | compare |
| b3146 | yraL | +0.6 | 3.9 | predicted methyltransferase (NCBI) | compare |
| b1187 | fadR | +0.6 | 4.2 | fatty acid metabolism regulator (NCBI) | compare |
| b1245 | oppC | +0.6 | 3.2 | oligopeptide transporter subunit (NCBI) | compare |
| b2421 | cysM | +0.6 | 3.1 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b4570 | lomR | +0.6 | 1.3 | no description | compare |
| b4577 | sgrS | +0.6 | 1.6 | small antisense RNA (NCBI) | compare |
| b3027 | ygiZ | +0.5 | 0.7 | conserved inner membrane protein (NCBI) | compare |
| b2283 | nuoG | +0.5 | 3.7 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b3516 | gadX | +0.5 | 4.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2904 | gcvH | +0.5 | 2.0 | glycine cleavage system protein H (NCBI) | compare |
| b4522 | yciX_1 | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b4345 | mcrC | +0.5 | 1.0 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1758 | b1758 | +0.5 | 1.2 | putative cytochrome oxidase (VIMSS) | compare |
| b2343 | b2343 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1658 | purR | +0.5 | 3.0 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0726 | sucA | +0.5 | 2.2 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b2659 | b2659 | +0.5 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4416 | rybA | +0.5 | 1.3 | unknown RNA (NCBI) | compare |
| b1165 | ymgA | +0.5 | 0.5 | hypothetical protein (NCBI) | compare |
| b3238 | yhcN | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1841 | yobA | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b3193 | yrbD | +0.5 | 3.9 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1370 | insH-5 | +0.5 | 0.8 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b0617 | citD | +0.5 | 1.2 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2110 | yehC | +0.5 | 1.0 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2903 | gcvP | +0.5 | 4.2 | glycine dehydrogenase (NCBI) | compare |
| b4126 | yjdI | +0.5 | 4.2 | hypothetical protein (NCBI) | compare |
| b4222 | ytfP | +0.5 | 3.6 | hypothetical protein (NCBI) | compare |
| b1821 | b1821 | +0.5 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b1164 | ycgZ | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b2498 | upp | +0.5 | 1.8 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2094 | gatA | +0.5 | 3.1 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3206 | npr | +0.5 | 2.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2911 | ssrS | +0.5 | 0.9 | 6S regulatory RNA (NCBI) | compare |
| b3101 | yqjF | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1246 | oppD | +0.5 | 2.6 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b4551 | yheV | +0.5 | 1.2 | hypothetical protein (NCBI) | compare |
| b2765 | ygcM | +0.5 | 2.1 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b3870 | glnA | +0.5 | 1.5 | glutamine synthetase (NCBI) | compare |
| b0931 | pncB | +0.4 | 2.4 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b1827 | kdgR | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4596 | yciZ | +0.4 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1233 | ychJ | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b1765 | ydjA | +0.4 | 0.7 | predicted oxidoreductase (NCBI) | compare |
| b2540 | hcaC | +0.4 | 2.6 | 3-phenylpropionate dioxygenase, predicted ferredoxin subunit (NCBI) | compare |
| b3889 | yiiE | +0.4 | 1.4 | predicted transcriptional regulator (RefSeq) | compare |
| b1161 | ycgX | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b4214 | cysQ | +0.4 | 3.6 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b0013 | yaaI | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b1431 | ydcL | +0.4 | 1.5 | predicted lipoprotein (NCBI) | compare |
| b4402 | yjjY | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b0636 | ybeA | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0862 | artQ | +0.4 | 1.1 | arginine transporter subunit (NCBI) | compare |
| b1247 | oppF | +0.4 | 1.5 | oligopeptide transporter subunit (NCBI) | compare |
| b1028 | ymdE | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1959 | yedA | +0.4 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b2291 | yfbR | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b1182 | hlyE | +0.4 | 0.4 | hemolysin E (VIMSS) | compare |
| b0426 | yajQ | +0.4 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2346 | vacJ | +0.4 | 2.4 | predicted lipoprotein (NCBI) | compare |
| b3810 | yigA | +0.4 | 3.2 | hypothetical protein (NCBI) | compare |
| b4181 | yjfI | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3228 | sspB | +0.4 | 1.9 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b2197 | ccmE | +0.4 | 2.5 | periplasmic heme chaperone (NCBI) | compare |
| b4436 | ryeC | +0.4 | 1.1 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b0461 | ybaJ | +0.4 | 3.0 | hypothetical protein (NCBI) | compare |
| b1448 | yncA | +0.4 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2287 | nuoB | +0.4 | 1.9 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1261 | trpB | +0.4 | 1.6 | tryptophan synthase subunit beta (NCBI) | compare |
| b3397 | nudE | +0.4 | 3.2 | ADP-ribose diphosphatase (NCBI) | compare |
| b4504 | ykfH | +0.4 | 2.6 | hypothetical protein (NCBI) | compare |
| b4571 | wbbL | +0.4 | 1.7 | no description | compare |
| b0710 | ybgI | +0.4 | 1.8 | conserved metal-binding protein (NCBI) | compare |
| b1527 | yneK | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2284 | nuoF | +0.4 | 2.0 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b4541 | yehK | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b0233 | yafO | +0.4 | 2.3 | predicted toxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2743 | pcm | +0.4 | 2.4 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b0863 | artI | +0.4 | 2.5 | arginine transporter subunit (NCBI) | compare |
| b3195 | yrbF | +0.4 | 3.1 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3033 | yqiB | +0.4 | 1.7 | predicted dehydrogenase (NCBI) | compare |
| b2476 | purC | +0.4 | 1.3 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b0082 | mraW | +0.4 | 1.7 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2479 | gcvR | +0.4 | 1.9 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b4116 | adiY | +0.4 | 3.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b0357 | yaiN | +0.4 | 1.3 | putative alpha helix chain (VIMSS) | compare |
| b2200 | ccmB | +0.4 | 1.8 | heme exporter subunit (NCBI) | compare |
| b0828 | iaaA | +0.4 | 1.4 | L-asparaginase (NCBI) | compare |
| b1951 | rcsA | +0.4 | 0.7 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b2203 | napB | +0.4 | 2.5 | cytochrome c-type protein (VIMSS) | compare |
| b0610 | rnk | +0.4 | 1.5 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b0473 | htpG | +0.4 | 3.0 | heat shock protein 90 (NCBI) | compare |
| b0001 | thrL | +0.4 | 1.6 | thr operon leader peptide (NCBI) | compare |
| b4089 | rpiR | +0.4 | 3.1 | transcriptional repressor of rpiB expression (VIMSS) | compare |
| b3074 | ygjH | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b0210 | yafE | +0.4 | 1.2 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b0778 | bioD | +0.4 | 1.5 | dethiobiotin synthetase (NCBI) | compare |
| b1530 | marR | +0.4 | 1.8 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b1842 | holE | +0.4 | 0.8 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3207 | yrbL | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b3443 | yrhA | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2455 | eutE | +0.4 | 2.0 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b1289 | ycjD | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b0494 | tesA | +0.4 | 2.4 | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) | compare |
| b2820 | recB | +0.4 | 0.4 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b3192 | yrbC | +0.4 | 3.0 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1284 | yciT | +0.3 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1171 | b1171 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2959 | yggL | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0471 | ybaB | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b0318 | yahD | +0.3 | 1.9 | predicted transcriptional regulator with ankyrin domain (NCBI) | compare |
| b1362 | rzpR | +0.3 | 1.0 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1703 | ydiA | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1110 | ycfJ | +0.3 | 2.7 | hypothetical protein (NCBI) | compare |
| b0736 | ybgC | +0.3 | 1.5 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b3057 | bacA | +0.3 | 2.3 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b4049 | dusA | +0.3 | 2.6 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b2007 | yeeX | +0.3 | 1.2 | conserved protein (RefSeq) | compare |
| b2276 | nuoN | +0.3 | 1.6 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2092 | gatC | +0.3 | 1.5 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b1524 | yneH | +0.3 | 0.6 | predicted glutaminase (NCBI) | compare |
| b1263 | trpD | +0.3 | 1.4 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b3636 | rpmG | +0.3 | 0.8 | 50S ribosomal protein L33 (NCBI) | compare |
| b1884 | cheR | +0.3 | 1.5 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b2762 | cysH | +0.3 | 2.2 | phosphoadenosine phosphosulfate reductase (NCBI) | compare |
| b4387 | ytjB | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1186 | nhaB | +0.3 | 2.5 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b2829 | ptsP | +0.3 | 2.9 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2741 | rpoS | +0.3 | 2.1 | RNA polymerase sigma factor (NCBI) | compare |
| b1789 | yeaL | +0.3 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b1960 | vsr | +0.3 | 1.2 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1548 | nohA | +0.3 | 0.9 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b0996 | torC | +0.3 | 2.2 | trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit (NCBI) | compare |