| | gene | name | fitness | t score | description | |
|---|
| b2642 | yfjW | +1.1 | 1.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1291 | sapD | +1.0 | 2.0 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4503 | yafF | +1.0 | 1.4 | no description | compare |
| b2168 | fruK | +1.0 | 1.1 | 1-phosphofructokinase (NCBI) | compare |
| b3341 | rpsG | +1.0 | 2.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b2259 | pmrD | +1.0 | 2.4 | polymyxin resistance protein B (VIMSS) | compare |
| b0018 | mokC | +0.9 | 2.3 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b2531 | iscR | +0.8 | 2.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1567 | intK | +0.8 | 2.0 | Qin prophage; predicted protein (RefSeq) | compare |
| b3119 | tdcR | +0.8 | 2.5 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b4631 | ykgQ | +0.8 | 2.4 | no description | compare |
| b0617 | citD | +0.7 | 2.5 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b1824 | yobF | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | +0.7 | 1.4 | shikimate kinase I (NCBI) | compare |
| b1607 | ydgC | +0.7 | 1.4 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1161 | ycgX | +0.7 | 1.2 | hypothetical protein (NCBI) | compare |
| b1171 | b1171 | +0.7 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2217 | rcsB | +0.6 | 5.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b4596 | yciZ | +0.6 | 0.9 | hypothetical protein (RefSeq) | compare |
| b2741 | rpoS | +0.6 | 4.3 | RNA polymerase sigma factor (NCBI) | compare |
| b4369 | leuP | +0.6 | 1.0 | tRNA-Leu (NCBI) | compare |
| b1370 | insH-5 | +0.6 | 1.7 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b2433 | b2433 | +0.6 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b3181 | greA | +0.6 | 3.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1728 | ydjM | +0.6 | 3.0 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b4458 | oxyS | +0.6 | 0.5 | global regulatory RNA (NCBI) | compare |
| b2189 | proL | +0.6 | 1.8 | tRNA-Pro (NCBI) | compare |
| b4699 | fnrS | +0.5 | 0.8 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b0843 | ybjH | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b3206 | npr | +0.5 | 2.0 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1709 | btuD | +0.5 | 0.8 | vitamin B12-transporter ATPase (NCBI) | compare |
| b4595 | yciY | +0.5 | 1.2 | hypothetical protein (RefSeq) | compare |
| b3816 | corA | +0.5 | 4.0 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0746 | valZ | +0.5 | 2.1 | tRNA-Val (NCBI) | compare |
| b1557 | cspB | +0.5 | 1.6 | Qin prophage; cold shock protein (NCBI) | compare |
| b4568 | ytjA | +0.5 | 1.8 | predicted protein (RefSeq) | compare |
| b1196 | ycgY | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b1400 | paaY | +0.5 | 2.4 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b2277 | nuoM | +0.5 | 3.0 | NADH dehydrogenase subunit M (NCBI) | compare |
| b0310 | ykgH | +0.5 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b1726 | yniB | +0.5 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b2765 | ygcM | +0.5 | 3.4 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b3382 | yhfY | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2362 | yfdS | +0.5 | 2.6 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b4201 | priB | +0.5 | 1.9 | primosomal replication protein N (NCBI) | compare |
| b4603 | rseX | +0.5 | 0.7 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0998 | torD | +0.5 | 1.1 | chaperone protein TorD (NCBI) | compare |
| b1563 | relE | +0.5 | 1.7 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1348 | lar | +0.5 | 1.4 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b3875 | ompL | +0.5 | 1.6 | predicted outer membrane porin L (NCBI) | compare |
| b0191 | yaeJ | +0.5 | 3.1 | hypothetical protein (NCBI) | compare |
| b1244 | oppB | +0.5 | 3.4 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2990 | hybG | +0.5 | 1.5 | hydrogenase 2 accessory protein (NCBI) | compare |
| b1165 | ymgA | +0.5 | 0.4 | hypothetical protein (NCBI) | compare |
| b0977 | hyaF | +0.5 | 2.3 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b2285 | nuoE | +0.4 | 1.5 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1007 | b1007 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1754 | b1754 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3636 | rpmG | +0.4 | 0.8 | 50S ribosomal protein L33 (NCBI) | compare |
| b2237 | inaA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b3166 | truB | +0.4 | 3.2 | tRNA pseudouridine synthase B (NCBI) | compare |
| b4413 | sokC | +0.4 | 1.2 | regulatory antisense RNA (NCBI) | compare |
| b4593 | ymgI | +0.4 | 0.6 | hypothetical protein (RefSeq) | compare |
| b2634 | yfjR | +0.4 | 2.7 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2051 | wcaH | +0.4 | 1.1 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b0289 | yagV | +0.4 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4152 | frdC | +0.4 | 1.8 | fumarate reductase subunit C (NCBI) | compare |
| b1739 | osmE | +0.4 | 1.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b2426 | ucpA | +0.4 | 1.5 | putative oxidoreductase (VIMSS) | compare |
| b0895 | dmsB | +0.4 | 1.6 | dimethyl sulfoxide reductase, anaerobic, subunit B (NCBI) | compare |
| b1689 | b1689 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3238 | yhcN | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1628 | rsxB | +0.4 | 2.1 | electron transport complex protein RnfB (NCBI) | compare |
| b2811 | ygdK | +0.4 | 2.4 | predicted Fe-S metabolism protein (NCBI) | compare |
| b3228 | sspB | +0.4 | 2.2 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b2684 | mprA | +0.4 | 1.7 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b2248 | yfaX | +0.4 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1540 | ydfH | +0.4 | 1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1194 | ycgR | +0.4 | 1.4 | protein involved in flagellar function (NCBI) | compare |
| b4436 | ryeC | +0.4 | 0.9 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1247 | oppF | +0.4 | 1.8 | oligopeptide transporter subunit (NCBI) | compare |
| b1953 | b1953 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4570 | lomR | +0.4 | 1.4 | no description | compare |
| b4695 | ykgT | +0.4 | 1.1 | no description | compare |
| b0364 | yaiS | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0426 | yajQ | +0.4 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b0784 | moaD | +0.4 | 1.9 | molybdopterin synthase, small subunit (NCBI) | compare |
| b2457 | cchA | +0.4 | 1.1 | detox protein (VIMSS) | compare |
| b4493 | gapC | +0.4 | 2.0 | no description | compare |
| b2225 | yfaP | +0.4 | 2.9 | hypothetical protein (NCBI) | compare |
| b4519 | icdC | +0.4 | 1.6 | no description | compare |
| b4406 | yaeP | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2061 | wzb | +0.4 | 1.4 | protein-tyrosine phosphatase (NCBI) | compare |
| b1620 | malI | +0.4 | 1.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1493 | gadB | +0.4 | 0.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2421 | cysM | +0.4 | 1.3 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2904 | gcvH | +0.4 | 0.9 | glycine cleavage system protein H (NCBI) | compare |
| b1410 | ynbC | +0.4 | 2.4 | predicted hydrolase (NCBI) | compare |
| b2047 | wcaJ | +0.4 | 1.6 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b0487 | cueR | +0.4 | 1.6 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b0247 | ykfG | +0.4 | 0.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2281 | nuoI | +0.4 | 1.2 | NADH dehydrogenase subunit I (NCBI) | compare |
| b0535 | fimZ | +0.4 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1492 | gadC | +0.4 | 2.2 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1950 | fliR | +0.4 | 1.5 | flagellar biosynthesis protein R (NCBI) | compare |
| b2989 | b2989 | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b4232 | fbp | +0.4 | 2.8 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b1959 | yedA | +0.3 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b3443 | yrhA | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1186 | nhaB | +0.3 | 2.6 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b2475 | ypfJ | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b4551 | yheV | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1582 | ynfA | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1729 | ydjN | +0.3 | 1.6 | predicted transporter (NCBI) | compare |
| b2093 | gatB | +0.3 | 1.5 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b1642 | slyA | +0.3 | 1.2 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2991 | hybF | +0.3 | 1.9 | protein involved with the maturation of hydrogenases 1 and 2 (NCBI) | compare |
| b2498 | upp | +0.3 | 1.3 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b3085 | ygjP | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0502 | ylbG | +0.3 | 1.2 | no description | compare |
| b0404 | yajB | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b2534 | yfhR | +0.3 | 2.3 | predicted peptidase (RefSeq) | compare |
| b2280 | nuoJ | +0.3 | 2.0 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3033 | yqiB | +0.3 | 1.3 | predicted dehydrogenase (NCBI) | compare |
| b2635 | ypjK | +0.3 | 1.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2673 | nrdH | +0.3 | 1.2 | glutaredoxin-like protein (NCBI) | compare |
| b2814 | metZ | +0.3 | 0.9 | tRNA-Met (NCBI) | compare |
| b1516 | lsrB | +0.3 | 1.6 | AI2 transporter (NCBI) | compare |
| b2157 | yeiE | +0.3 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3926 | glpK | +0.3 | 2.9 | glycerol kinase (NCBI) | compare |
| b1789 | yeaL | +0.3 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b1572 | ydfB | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2283 | nuoG | +0.3 | 2.2 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2439 | eutL | +0.3 | 1.5 | predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI) | compare |
| b1266 | yciV | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3658 | selC | +0.3 | 1.3 | tRNA-Sec (NCBI) | compare |
| b0931 | pncB | +0.3 | 1.8 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b2141 | yohJ | +0.3 | 0.9 | hypothetical protein (NCBI) | compare |
| b3146 | yraL | +0.3 | 2.1 | predicted methyltransferase (NCBI) | compare |
| b0989 | cspH | +0.3 | 1.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b2195 | ccmG | +0.3 | 1.6 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1243 | oppA | +0.3 | 2.1 | oligopeptide transporter subunit (NCBI) | compare |
| b0082 | mraW | +0.3 | 1.5 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1669 | ydhT | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b0549 | ybcO | +0.3 | 1.4 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4133 | cadC | +0.3 | 2.8 | DNA-binding transcriptional activator (NCBI) | compare |
| b0683 | fur | +0.3 | 0.6 | ferric uptake regulator (NCBI) | compare |
| b4196 | ulaD | +0.3 | 1.9 | 3-keto-L-gulonate 6-phosphate decarboxylase (NCBI) | compare |
| b4154 | frdA | +0.3 | 2.8 | fumarate reductase (NCBI) | compare |
| b2587 | kgtP | +0.3 | 1.9 | alpha-ketoglutarate transporter (NCBI) | compare |
| b1634 | tppB | +0.3 | 1.7 | putative tripeptide transporter permease (NCBI) | compare |
| b1298 | ycjL | +0.3 | 1.5 | probable amidotransferase subunit (VIMSS) | compare |
| b0357 | yaiN | +0.3 | 1.0 | putative alpha helix chain (VIMSS) | compare |
| b1842 | holE | +0.3 | 0.8 | DNA polymerase III, theta subunit (NCBI) | compare |
| b0013 | yaaI | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b1289 | ycjD | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1388 | paaA | +0.3 | 1.8 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b2284 | nuoF | +0.3 | 1.3 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1144 | ymfJ | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2946 | yggJ | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3495 | uspA | +0.3 | 2.4 | universal stress global response regulator (NCBI) | compare |
| b2939 | yqgB | +0.3 | 0.7 | predicted protein (RefSeq) | compare |
| b4522 | yciX_1 | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b1951 | rcsA | +0.3 | 0.6 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b3889 | yiiE | +0.3 | 0.9 | predicted transcriptional regulator (RefSeq) | compare |
| b1860 | ruvB | +0.3 | 0.2 | Holliday junction DNA helicase B (NCBI) | compare |
| b0450 | glnK | +0.3 | 1.3 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b1521 | uxaB | +0.3 | 2.0 | tagaturonate reductase (NCBI) | compare |
| b2095 | gatZ | +0.3 | 1.5 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b4623 | insO | +0.3 | 1.7 | no description | compare |
| b4222 | ytfP | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b1329 | b1329 | +0.3 | 1.9 | putative transport periplasmic protein (VIMSS) | compare |
| b0375 | yaiV | +0.3 | 1.7 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2366 | dsdA | +0.3 | 1.3 | D-serine dehydratase (NCBI) | compare |
| b1536 | ydeI | +0.3 | 0.4 | hypothetical protein (NCBI) | compare |
| b2502 | ppx | +0.3 | 2.2 | exopolyphosphatase (NCBI) | compare |
| b2959 | yggL | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1246 | oppD | +0.3 | 2.0 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1632 | rsxE | +0.3 | 1.9 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b1535 | ydeH | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b2288 | nuoA | +0.3 | 0.9 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b1692 | ydiB | +0.3 | 1.4 | quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b0696 | kdpC | +0.3 | 1.0 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1195 | ymgE | +0.3 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b2993 | hybD | +0.3 | 1.5 | predicted maturation element for hydrogenase 2 (NCBI) | compare |
| b4505 | insX | +0.3 | 0.5 | predicted IS protein (RefSeq) | compare |
| b4190 | yjfP | +0.3 | 1.8 | predicted hydrolase (NCBI) | compare |
| b1960 | vsr | +0.3 | 1.0 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1305 | pspB | +0.3 | 1.4 | phage shock protein B (NCBI) | compare |
| b4127 | yjdJ | +0.3 | 2.0 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2998 | yghW | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1889 | motB | +0.3 | 1.7 | flagellar motor protein MotB (NCBI) | compare |
| b0714 | nei | +0.3 | 1.5 | endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI) | compare |
| b1382 | ynbE | +0.3 | 0.7 | predicted lipoprotein (NCBI) | compare |
| b2286 | nuoC | +0.3 | 1.3 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b1968 | yedV | +0.3 | 1.1 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b2250 | b2250 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0141 | yadN | +0.3 | 1.7 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2637 | yfjT | +0.3 | 1.4 | CP4-57 prophage; predicted protein (NCBI) | compare |