| | gene | name | fitness | t score | description | |
|---|
| b4374 | yjjG | -4.5 | -8.6 | nucleotidase (NCBI) | compare |
| b2188 | yejM | -3.3 | -10.3 | predicted hydrolase, inner membrane (NCBI) | compare |
| b1105 | ycfM | -2.5 | -2.6 | predicted outer membrane lipoprotein (NCBI) | compare |
| b0142 | folK | -2.5 | -1.0 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b4025 | pgi | -2.1 | -9.8 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4246 | pyrL | -2.0 | -1.3 | pyrBI operon leader peptide (NCBI) | compare |
| b1361 | ydaW | -2.0 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0222 | lpcA | -1.9 | -1.3 | phosphoheptose isomerase (NCBI) | compare |
| b1192 | ldcA | -1.9 | -1.3 | L,D-carboxypeptidase A (NCBI) | compare |
| b3849 | trkH | -1.8 | -9.1 | potassium transporter (NCBI) | compare |
| b3642 | pyrE | -1.7 | -1.2 | orotate phosphoribosyltransferase (NCBI) | compare |
| b0149 | mrcB | -1.7 | -7.6 | penicillin-binding protein 1b (NCBI) | compare |
| b1290 | sapF | -1.7 | -1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3169 | nusA | -1.6 | -1.6 | transcription elongation factor NusA (NCBI) | compare |
| b1882 | cheY | -1.6 | -0.6 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3787 | rffD | -1.5 | -6.8 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3790 | rffC | -1.5 | -2.3 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2038 | rfbC | -1.5 | -5.5 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b2912 | ygfA | -1.5 | -1.0 | putative ligase (VIMSS) | compare |
| b2017 | yefM | -1.5 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4000 | hupA | -1.4 | -6.2 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3860 | dsbA | -1.4 | -5.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b3960 | argH | -1.4 | -8.3 | argininosuccinate lyase (NCBI) | compare |
| b0632 | dacA | -1.4 | -5.8 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b2497 | uraA | -1.4 | -6.6 | uracil transporter (NCBI) | compare |
| b0080 | fruR | -1.4 | -4.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3205 | yhbJ | -1.3 | -2.9 | hypothetical protein (NCBI) | compare |
| b3469 | zntA | -1.3 | -6.1 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b1709 | btuD | -1.3 | -1.1 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3172 | argG | -1.3 | -7.2 | argininosuccinate synthase (NCBI) | compare |
| b4481 | rffT | -1.3 | -2.7 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1620 | malI | -1.3 | -2.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1062 | pyrC | -1.2 | -2.7 | dihydroorotase (NCBI) | compare |
| b3791 | rffA | -1.2 | -2.4 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b3761 | trpT | -1.2 | -1.6 | tRNA-Trp (NCBI) | compare |
| b2330 | yfcB | -1.2 | -1.2 | putative adenine-specific methylase (VIMSS) | compare |
| b4218 | ytfL | -1.2 | -5.6 | predicted inner membrane protein (NCBI) | compare |
| b4201 | priB | -1.2 | -2.3 | primosomal replication protein N (NCBI) | compare |
| b3934 | cytR | -1.2 | -8.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0051 | ksgA | -1.2 | -3.7 | dimethyladenosine transferase (NCBI) | compare |
| b0523 | purE | -1.2 | -3.6 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b3794 | rffM | -1.2 | -4.0 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1830 | prc | -1.2 | -1.8 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3052 | rfaE | -1.2 | -0.8 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b1176 | minC | -1.2 | -1.2 | septum formation inhibitor (NCBI) | compare |
| b3500 | gor | -1.2 | -1.5 | glutathione reductase (NCBI) | compare |
| b0088 | murD | -1.2 | -2.3 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b2258 | b2258 | -1.1 | -1.3 | putative transport/receptor protein (VIMSS) | compare |
| b3867 | hemN | -1.1 | -5.9 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b1185 | dsbB | -1.1 | -2.0 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b0866 | ybjQ | -1.1 | -1.3 | hypothetical protein (NCBI) | compare |
| b3649 | rpoZ | -1.1 | -2.2 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b3164 | pnp | -1.1 | -2.2 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1231 | tyrT | -1.1 | -1.0 | tRNA-Tyr (NCBI) | compare |
| b3620 | rfaF | -1.1 | -0.7 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0015 | dnaJ | -1.1 | -6.2 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1217 | chaB | -1.1 | -1.2 | cation transport regulator (NCBI) | compare |
| b4431 | rprA | -1.1 | -2.0 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1304 | pspA | -1.0 | -2.8 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b3204 | ptsN | -1.0 | -3.3 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b2040 | rfbD | -1.0 | -5.7 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b2343 | b2343 | -1.0 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3784 | rfe | -1.0 | -5.9 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1362 | rzpR | -1.0 | -1.3 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b4702 | mgtL | -1.0 | -0.7 | regulatory leader peptide for mgtA (NCBI) | compare |
| b2490 | b2490 | -1.0 | -3.2 | putative protein processing element (VIMSS) | compare |
| b4655 | ythA | -1.0 | -1.3 | expressed protein (RefSeq) | compare |
| b1358 | ydaT | -1.0 | -1.4 | Rac prophage; predicted protein (NCBI) | compare |
| b3281 | aroE | -1.0 | -6.3 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b0212 | gloB | -1.0 | -1.5 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b0767 | ybhE | -1.0 | -2.8 | 6-phosphogluconolactonase (NCBI) | compare |
| b1583 | ynfB | -1.0 | -2.0 | hypothetical protein (NCBI) | compare |
| b1279 | yciS | -1.0 | -1.2 | conserved inner membrane protein (NCBI) | compare |
| b2832 | ygdQ | -1.0 | -5.1 | predicted inner membrane protein (NCBI) | compare |
| b1269 | rluB | -0.9 | -2.7 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1281 | pyrF | -0.9 | -1.4 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b0567 | ybcH | -0.9 | -5.4 | hypothetical protein (NCBI) | compare |
| b3289 | rsmB | -0.9 | -6.3 | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | compare |
| b0957 | ompA | -0.9 | -2.3 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b4508 | peaD | -0.9 | -2.2 | putative sensory transduction regulator (VIMSS) | compare |
| b0585 | fes | -0.9 | -3.9 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b4533 | ynfO | -0.9 | -1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b1942 | fliJ | -0.9 | -1.0 | flagellar biosynthesis chaperone (NCBI) | compare |
| b3438 | gntR | -0.9 | -3.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1613 | manA | -0.9 | -1.2 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b0907 | serC | -0.9 | -4.0 | phosphoserine aminotransferase (NCBI) | compare |
| b0232 | yafN | -0.8 | -0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4394 | yjjX | -0.8 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2837 | galR | -0.8 | -3.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3786 | rffE | -0.8 | -4.7 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b1271 | yciK | -0.8 | -2.3 | short chain dehydrogenase (NCBI) | compare |
| b3755 | yieP | -0.8 | -3.7 | predicted transcriptional regulator (NCBI) | compare |
| b1848 | yebG | -0.8 | -1.2 | conserved protein regulated by LexA (NCBI) | compare |
| b2207 | napD | -0.8 | -2.4 | assembly protein for periplasmic nitrate reductase (NCBI) | compare |
| b1138 | ymfE | -0.8 | -1.2 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1835 | yebU | -0.8 | -2.3 | putative nucleolar proteins (VIMSS) | compare |
| b4245 | pyrB | -0.8 | -1.5 | aspartate carbamoyltransferase catalytic subunit (NCBI) | compare |
| b4203 | rplI | -0.8 | -2.3 | 50S ribosomal protein L9 (NCBI) | compare |
| b1671 | ydhX | -0.8 | -1.8 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b0145 | dksA | -0.8 | -1.7 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3404 | envZ | -0.8 | -4.8 | osmolarity sensor protein (NCBI) | compare |
| b2007 | yeeX | -0.8 | -2.0 | conserved protein (RefSeq) | compare |
| b1685 | ydiH | -0.8 | -1.0 | predicted protein (RefSeq) | compare |
| b2444 | yffM | -0.8 | -1.7 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1642 | slyA | -0.8 | -1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3162 | deaD | -0.8 | -2.2 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b0049 | apaH | -0.7 | -1.2 | diadenosinetetraphosphatase (NCBI) | compare |
| b1143 | ymfI | -0.7 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3764 | yifE | -0.7 | -2.2 | hypothetical protein (NCBI) | compare |
| b4407 | thiS | -0.7 | -1.4 | sulfur carrier protein ThiS (NCBI) | compare |
| b4178 | yjeB | -0.7 | -1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2082 | ogrK | -0.7 | -1.8 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b0814 | ompX | -0.7 | -2.7 | outer membrane protein X (NCBI) | compare |
| b1805 | fadD | -0.7 | -4.3 | acyl-CoA synthase (NCBI) | compare |
| b4180 | rlmB | -0.7 | -4.2 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b2071 | yegJ | -0.7 | -1.0 | hypothetical protein (NCBI) | compare |
| b4171 | miaA | -0.7 | -1.1 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b1670 | ydhU | -0.7 | -2.2 | predicted cytochrome (NCBI) | compare |
| b0004 | thrC | -0.7 | -4.8 | threonine synthase (NCBI) | compare |
| b2025 | hisF | -0.7 | -2.4 | imidazole glycerol phosphate synthase subunit HisF (NCBI) | compare |
| b3149 | yraO | -0.7 | -3.3 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b1253 | yciA | -0.7 | -2.0 | predicted hydrolase (NCBI) | compare |
| b1853 | yebK | -0.7 | -2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1758 | b1758 | -0.7 | -0.8 | putative cytochrome oxidase (VIMSS) | compare |
| b0522 | purK | -0.7 | -3.8 | phosphoribosylaminoimidazole carboxylase (NCBI) | compare |
| b2100 | yegV | -0.7 | -3.3 | predicted kinase (NCBI) | compare |
| b3098 | yqjD | -0.7 | -2.5 | hypothetical protein (NCBI) | compare |
| b2493 | yfgO | -0.7 | -3.4 | predicted inner membrane protein (NCBI) | compare |
| b0926 | ycbK | -0.7 | -3.0 | hypothetical protein (NCBI) | compare |
| b3237 | argR | -0.7 | -1.9 | arginine repressor (NCBI) | compare |
| b1548 | nohA | -0.7 | -1.4 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b1936 | intG | -0.7 | -0.6 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2248 | yfaX | -0.7 | -1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4472 | yhdP | -0.7 | -5.8 | conserved membrane protein, predicted transporter (NCBI) | compare |
| b4480 | hdfR | -0.7 | -2.5 | transcriptional regulator HdfR (NCBI) | compare |
| b2569 | lepA | -0.7 | -1.4 | GTP-binding protein LepA (NCBI) | compare |
| b1293 | sapB | -0.7 | -0.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0002 | thrA | -0.7 | -4.9 | bifunctional aspartokinase I/homeserine dehydrogenase I (NCBI) | compare |
| b0101 | yacG | -0.6 | -1.5 | zinc-binding protein (NCBI) | compare |
| b4697 | yrdF | -0.6 | -2.9 | no description | compare |
| b3979 | thrT | -0.6 | -0.2 | tRNA-Thr (NCBI) | compare |
| b2783 | chpR | -0.6 | -1.7 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b2344 | fadL | -0.6 | -3.9 | long-chain fatty acid outer membrane transporter (RefSeq) | compare |
| b2329 | aroC | -0.6 | -2.2 | chorismate synthase (NCBI) | compare |
| b3375 | yhfR | -0.6 | -3.6 | putative transcriptional regulator (VIMSS) | compare |
| b3472 | b3472 | -0.6 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b2144 | sanA | -0.6 | -4.1 | hypothetical protein (NCBI) | compare |
| b2506 | yfgI | -0.6 | -1.3 | hypothetical protein (NCBI) | compare |
| b1791 | yeaN | -0.6 | -3.2 | predicted transporter (NCBI) | compare |
| b4596 | yciZ | -0.6 | -1.3 | hypothetical protein (RefSeq) | compare |
| b3644 | yicC | -0.6 | -2.7 | hypothetical protein (NCBI) | compare |
| b1553 | ydfP | -0.6 | -0.9 | Qin prophage; conserved protein (NCBI) | compare |
| b3838 | tatB | -0.6 | -2.6 | sec-independent translocase (NCBI) | compare |
| b3621 | rfaC | -0.6 | -0.4 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b0434 | yajG | -0.6 | -3.4 | putative polymerase/proteinase (VIMSS) | compare |
| b3497 | yhiQ | -0.6 | -3.7 | predicted SAM-dependent methyltransferase (NCBI) | compare |
| b3387 | dam | -0.6 | -2.4 | DNA adenine methylase (NCBI) | compare |
| b2445 | yffN | -0.6 | -1.1 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1108 | ycfP | -0.6 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1266 | yciV | -0.6 | -1.8 | hypothetical protein (NCBI) | compare |
| b0730 | mngR | -0.6 | -0.8 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0033 | carB | -0.6 | -1.6 | carbamoyl-phosphate synthase large subunit (NCBI) | compare |
| b3601 | mtlR | -0.6 | -2.5 | DNA-binding repressor (NCBI) | compare |
| b1179 | ycgL | -0.6 | -1.4 | conserved protein (NCBI) | compare |
| b3602 | yibL | -0.6 | -2.8 | hypothetical protein (NCBI) | compare |
| b1656 | sodB | -0.6 | -1.2 | superoxide dismutase, Fe (NCBI) | compare |
| b4538 | yoeF | -0.6 | -1.1 | hypothetical protein (RefSeq) | compare |
| b1939 | fliG | -0.6 | -1.5 | flagellar motor switch protein G (NCBI) | compare |
| b1960 | vsr | -0.6 | -1.7 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b2237 | inaA | -0.6 | -1.3 | hypothetical protein (NCBI) | compare |
| b1147 | ymfL | -0.6 | -1.8 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2281 | nuoI | -0.6 | -1.4 | NADH dehydrogenase subunit I (NCBI) | compare |
| b1842 | holE | -0.6 | -1.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b4242 | mgtA | -0.5 | -2.5 | magnesium transporter (NCBI) | compare |
| b2818 | argA | -0.5 | -2.7 | N-acetylglutamate synthase (NCBI) | compare |
| b3247 | cafA | -0.5 | -3.4 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b4174 | hflK | -0.5 | -3.7 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1412 | azoR | -0.5 | -1.4 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b1992 | cobS | -0.5 | -1.1 | cobalamin synthase (NCBI) | compare |
| b3163 | nlpI | -0.5 | -1.3 | hypothetical protein (NCBI) | compare |
| b2564 | pdxJ | -0.5 | -2.1 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b4648 | ysaC | -0.5 | -0.8 | no description | compare |
| b3409 | feoB | -0.5 | -4.6 | ferrous iron transport protein B (NCBI) | compare |
| b4158 | yjeO | -0.5 | -1.5 | conserved inner membrane protein (NCBI) | compare |
| b2259 | pmrD | -0.5 | -0.6 | polymyxin resistance protein B (VIMSS) | compare |
| b2750 | cysC | -0.5 | -2.4 | adenylylsulfate kinase (NCBI) | compare |
| b2423 | cysW | -0.5 | -2.0 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b3259 | prmA | -0.5 | -1.6 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b2350 | yfdG | -0.5 | -2.7 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b2125 | yehT | -0.5 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | -0.5 | -0.5 | hypothetical protein (NCBI) | compare |
| b0003 | thrB | -0.5 | -2.2 | homoserine kinase (NCBI) | compare |
| b3465 | yhhF | -0.5 | -2.4 | predicted methyltransferase (NCBI) | compare |
| b1540 | ydfH | -0.5 | -1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4436 | ryeC | -0.5 | -0.7 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b2295 | yfbV | -0.5 | -2.7 | hypothetical protein (NCBI) | compare |
| b3977 | tyrU | -0.5 | -0.4 | tRNA-Tyr (NCBI) | compare |
| b2024 | hisA | -0.5 | -0.8 | N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) | compare |
| b1007 | b1007 | -0.5 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4676 | yoaK | -0.5 | -0.3 | expressed protein (RefSeq) | compare |