| | gene | name | fitness | t score | description | |
|---|
| b2498 | upp | +15.5 | 47.9 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1257 | yciE | +2.1 | 1.2 | hypothetical protein (NCBI) | compare |
| b4128 | yjdK | +2.0 | 2.0 | hypothetical protein (NCBI) | compare |
| b2297 | pta | +1.9 | 0.9 | phosphate acetyltransferase (NCBI) | compare |
| b1860 | ruvB | +1.9 | 0.9 | Holliday junction DNA helicase B (NCBI) | compare |
| b2055 | wcaE | +1.9 | 0.9 | predicted glycosyl transferase (NCBI) | compare |
| b4214 | cysQ | +1.8 | 16.1 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b1167 | ymgC | +1.8 | 0.9 | hypothetical protein (NCBI) | compare |
| b1576 | ydfD | +1.8 | 0.9 | Qin prophage; predicted protein (NCBI) | compare |
| b1865 | nudB | +1.7 | 3.2 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1001 | yccE | +1.7 | 0.8 | hypothetical protein (NCBI) | compare |
| b4443 | gcvB | +1.7 | 0.8 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b1499 | ydeO | +1.7 | 0.8 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1497 | b1497 | +1.7 | 0.8 | putative enzyme (VIMSS) | compare |
| b2830 | nudH | +1.7 | 0.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1712 | ihfA | +1.6 | 1.0 | integration host factor subunit alpha (NCBI) | compare |
| b1363 | trkG | +1.6 | 1.5 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b2853 | ygeI | +1.6 | 0.8 | hypothetical protein (NCBI) | compare |
| b1347 | ydaC | +1.6 | 0.8 | Rac prophage; predicted protein (NCBI) | compare |
| b2352 | yfdI | +1.6 | 1.4 | CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI) | compare |
| b3121 | yhaC | +1.6 | 0.8 | hypothetical protein (NCBI) | compare |
| b2894 | xerD | +1.6 | 1.2 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b2847 | yqeI | +1.6 | 0.9 | predicted transcriptional regulator (NCBI) | compare |
| b1165 | ymgA | +1.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b4651 | yibW | +1.5 | 0.8 | no description | compare |
| b3442 | yhhZ | +1.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b1130 | phoP | +1.5 | 1.0 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b1551 | b1551 | +1.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4647 | mokA | +1.5 | 2.3 | no description | compare |
| b1861 | ruvA | +1.5 | 1.3 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b3725 | pstB | +1.5 | 0.9 | phosphate transporter subunit (NCBI) | compare |
| b3463 | ftsE | +1.5 | 0.8 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4172 | hfq | +1.5 | 0.7 | RNA-binding protein Hfq (NCBI) | compare |
| b3386 | rpe | +1.5 | 0.9 | ribulose-phosphate 3-epimerase (NCBI) | compare |
| b1258 | yciF | +1.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1182 | hlyE | +1.4 | 0.9 | hemolysin E (VIMSS) | compare |
| b4215 | ytfI | +1.4 | 3.4 | hypothetical protein (NCBI) | compare |
| b1690 | ydiM | +1.4 | 2.9 | predicted transporter (NCBI) | compare |
| b0658 | ybeX | +1.4 | 0.7 | predicteed ion transport (NCBI) | compare |
| b1409 | ynbB | +1.4 | 0.9 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b4279 | yjhB | +1.4 | 0.7 | putative transport protein (VIMSS) | compare |
| b2820 | recB | +1.4 | 0.9 | exonuclease V (RecBCD complex), beta subunit (NCBI) | compare |
| b0603 | ybdO | +1.4 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1773 | ydjI | +1.4 | 2.7 | predicted aldolase (NCBI) | compare |
| b1332 | ynaJ | +1.4 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b4660 | yhiL | +1.4 | 0.8 | no description | compare |
| b4155 | yjeA | +1.4 | 0.8 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b1730 | ydjO | +1.4 | 2.0 | predicted protein (RefSeq) | compare |
| b1351 | racC | +1.4 | 0.8 | Rac prophage; predicted protein (NCBI) | compare |
| b2625 | yfjI | +1.4 | 2.4 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1429 | tehA | +1.4 | 2.2 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b0737 | tolQ | +1.4 | 1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0500 | ybbD | +1.4 | 0.7 | hypothetical protein (RefSeq) | compare |
| b2110 | yehC | +1.4 | 2.2 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3504 | yhiS | +1.4 | 0.8 | hypothetical protein (RefSeq) | compare |
| b0683 | fur | +1.4 | 1.8 | ferric uptake regulator (NCBI) | compare |
| b1129 | phoQ | +1.3 | 0.9 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b2652 | ileY | +1.3 | 0.9 | tRNA-Ile (NCBI) | compare |
| b2363 | yfdT | +1.3 | 4.6 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b0118 | acnB | +1.3 | 0.8 | aconitate hydratase (NCBI) | compare |
| b3405 | ompR | +1.3 | 0.9 | osmolarity response regulator (NCBI) | compare |
| b3035 | tolC | +1.3 | 0.9 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b0738 | tolR | +1.3 | 0.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4497 | yeeL | +1.3 | 0.9 | no description | compare |
| b2279 | nuoK | +1.3 | 2.5 | NADH dehydrogenase subunit K (NCBI) | compare |
| b4590 | ybfK | +1.3 | 1.5 | hypothetical protein (RefSeq) | compare |
| b4462 | ygaQ | +1.3 | 1.5 | hypothetical protein (RefSeq) | compare |
| b3026 | qseC | +1.3 | 1.6 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0705 | ybfL | +1.3 | 0.8 | putative receptor protein (VIMSS) | compare |
| b4640 | yoeG | +1.2 | 4.0 | no description | compare |
| b1506 | yneL | +1.2 | 2.8 | predicted transcriptional regulator (NCBI) | compare |
| b4177 | purA | +1.2 | 0.8 | adenylosuccinate synthetase (NCBI) | compare |
| b1291 | sapD | +1.2 | 1.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4066 | yjcF | +1.2 | 0.7 | hypothetical protein (NCBI) | compare |
| b3341 | rpsG | +1.2 | 2.3 | 30S ribosomal protein S7 (NCBI) | compare |
| b1159 | mcrA | +1.2 | 1.1 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b1968 | yedV | +1.2 | 3.7 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b1536 | ydeI | +1.2 | 0.8 | hypothetical protein (NCBI) | compare |
| b0279 | yagM | +1.2 | 0.7 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3290 | trkA | +1.1 | 0.8 | potassium transporter peripheral membrane component (NCBI) | compare |
| b2846 | yqeH | +1.1 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0740 | tolB | +1.1 | 0.8 | translocation protein TolB precursor (NCBI) | compare |
| b2831 | mutH | +1.1 | 1.4 | DNA mismatch repair protein (NCBI) | compare |
| b0114 | aceE | +1.1 | 0.7 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b2215 | ompC | +1.1 | 0.8 | outer membrane porin protein C (NCBI) | compare |
| b0890 | ftsK | +1.1 | 2.2 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1951 | rcsA | +1.1 | 1.2 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b2642 | yfjW | +1.1 | 1.5 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1579 | intQ | +1.1 | 3.1 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b0739 | tolA | +1.1 | 0.7 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3889 | yiiE | +1.1 | 3.2 | predicted transcriptional regulator (RefSeq) | compare |
| b1874 | cutC | +1.1 | 1.0 | copper homeostasis protein (NCBI) | compare |
| b3875 | ompL | +1.0 | 2.4 | predicted outer membrane porin L (NCBI) | compare |
| b4042 | dgkA | +1.0 | 0.7 | diacylglycerol kinase (NCBI) | compare |
| b0741 | pal | +1.0 | 1.3 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b2650 | ypjC | +1.0 | 0.4 | hypothetical protein (RefSeq) | compare |
| b1236 | galU | +1.0 | 1.9 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3811 | xerC | +1.0 | 0.7 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1877 | yecT | +1.0 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1823 | cspC | +1.0 | 2.8 | stress protein, member of the CspA-family (NCBI) | compare |
| b4494 | arpB | +1.0 | 1.3 | no description | compare |
| b3863 | polA | +1.0 | 0.6 | DNA polymerase I (NCBI) | compare |
| b1505 | ydeT | +1.0 | 0.6 | hypothetical protein (RefSeq) | compare |
| b0326 | yahL | +0.9 | 2.4 | hypothetical protein (NCBI) | compare |
| b1368 | ynaA | +0.9 | 2.5 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b4253 | yjgL | +0.9 | 4.0 | orf, hypothetical protein (VIMSS) | compare |
| b2939 | yqgB | +0.9 | 1.0 | predicted protein (RefSeq) | compare |
| b4017 | arpA | +0.9 | 3.7 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b1762 | b1762 | +0.9 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1400 | paaY | +0.9 | 3.3 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b0303 | ykgI | +0.9 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b1785 | yeaI | +0.9 | 2.6 | predicted diguanylate cyclase (NCBI) | compare |
| b1545 | pinQ | +0.9 | 0.3 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b3622 | rfaL | +0.9 | 2.4 | O-antigen ligase (NCBI) | compare |
| b4239 | treC | +0.9 | 0.8 | trehalose-6-P hydrolase (NCBI) | compare |
| b1739 | osmE | +0.9 | 3.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b1600 | mdtJ | +0.9 | 1.8 | multidrug efflux system transporter (NCBI) | compare |
| b3613 | yibP | +0.9 | 1.3 | putative membrane protein (VIMSS) | compare |
| b1121 | ycfZ | +0.9 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b3462 | ftsX | +0.9 | 4.1 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0234 | yafP | +0.8 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4048 | yjbM | +0.8 | 1.4 | hypothetical protein (NCBI) | compare |
| b2369 | evgA | +0.8 | 2.6 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b0437 | clpP | +0.8 | 1.3 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b2528 | iscA | +0.8 | 1.0 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0310 | ykgH | +0.8 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b4458 | oxyS | +0.8 | 1.6 | global regulatory RNA (NCBI) | compare |
| b1778 | yeaA | +0.8 | 1.9 | methionine sulfoxide reductase B (NCBI) | compare |
| b1850 | eda | +0.8 | 1.9 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b1498 | b1498 | +0.8 | 4.8 | putative sulfatase (VIMSS) | compare |
| b0294 | ykgK | +0.8 | 3.3 | predicted regulator (NCBI) | compare |
| b3443 | yrhA | +0.8 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3706 | trmE | +0.8 | 2.8 | tRNA modification GTPase (NCBI) | compare |
| b1465 | narV | +0.8 | 1.0 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b3624 | rfaZ | +0.8 | 1.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3723 | bglG | +0.8 | 3.5 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b3359 | argD | +0.8 | 6.8 | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) | compare |
| b1223 | narK | +0.8 | 1.1 | nitrate/nitrite transporter (NCBI) | compare |
| b3778 | rep | +0.7 | 4.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1524 | yneH | +0.7 | 1.1 | predicted glutaminase (NCBI) | compare |
| b3120 | yhaB | +0.7 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3146 | yraL | +0.7 | 5.3 | predicted methyltransferase (NCBI) | compare |
| b3658 | selC | +0.7 | 1.5 | tRNA-Sec (NCBI) | compare |
| b2911 | ssrS | +0.7 | 1.4 | 6S regulatory RNA (NCBI) | compare |
| b1156 | tfaE | +0.7 | 3.4 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b1691 | ydiN | +0.7 | 2.2 | predicted transporter (RefSeq) | compare |
| b2946 | yggJ | +0.7 | 3.8 | orf, hypothetical protein (VIMSS) | compare |
| b3512 | GadE | +0.7 | 2.5 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4650 | yibS | +0.7 | 1.7 | no description | compare |
| b1168 | b1168 | +0.7 | 2.7 | putative proteases (VIMSS) | compare |
| b1658 | purR | +0.7 | 4.0 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b1150 | ymfR | +0.7 | 1.1 | e14 prophage; predicted protein (NCBI) | compare |
| b2741 | rpoS | +0.7 | 3.2 | RNA polymerase sigma factor (NCBI) | compare |
| b4699 | fnrS | +0.7 | 0.8 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1557 | cspB | +0.7 | 1.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b4589 | ylcI | +0.7 | 1.5 | hypothetical protein (RefSeq) | compare |
| b4552 | yrhC | +0.7 | 0.9 | no description | compare |
| b2318 | truA | +0.7 | 1.2 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1476 | fdnI | +0.7 | 0.9 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1969 | yedW | +0.7 | 2.8 | putative 2-component transcriptional regulator (VIMSS) | compare |
| b0675 | nagD | +0.7 | 4.4 | UMP phosphatase (NCBI) | compare |
| b2287 | nuoB | +0.7 | 2.2 | NADH dehydrogenase subunit B (NCBI) | compare |
| b4345 | mcrC | +0.7 | 0.6 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b4299 | yjhI | +0.7 | 3.9 | KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4704 | arrS | +0.7 | 0.3 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b3483 | yhhH | +0.7 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b2734 | pphB | +0.7 | 2.8 | serine/threonine-specific protein phosphatase 2 (NCBI) | compare |
| b1348 | lar | +0.7 | 1.5 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2236 | yfaE | +0.7 | 2.0 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1292 | sapC | +0.7 | 1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2163 | yeiL | +0.6 | 2.9 | putative transcriptional regulator (VIMSS) | compare |
| b1863 | ruvC | +0.6 | 0.6 | Holliday junction resolvase (NCBI) | compare |
| b0018 | mokC | +0.6 | 1.3 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b2895 | fldB | +0.6 | 1.6 | flavodoxin 2 (NCBI) | compare |
| b2285 | nuoE | +0.6 | 0.9 | NADH dehydrogenase subunit E (NCBI) | compare |
| b4701 | sokX | +0.6 | 0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1040 | csgD | +0.6 | 0.7 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b3138 | agaB | +0.6 | 1.8 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b0828 | iaaA | +0.6 | 2.3 | L-asparaginase (NCBI) | compare |
| b0136 | yadK | +0.6 | 2.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4559 | yjdO | +0.6 | 2.5 | hypothetical protein (NCBI) | compare |
| b0912 | ihfB | +0.6 | 0.4 | integration host factor subunit beta (NCBI) | compare |
| b1161 | ycgX | +0.6 | 0.6 | hypothetical protein (NCBI) | compare |
| b2504 | yfgG | +0.6 | 0.8 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b4325 | yjiC | +0.6 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1780 | yeaD | +0.6 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b3779 | gpp | +0.6 | 5.2 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b3183 | obgE | +0.6 | 0.9 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b2471 | yffB | +0.6 | 2.7 | hypothetical protein (NCBI) | compare |
| b1542 | ydfI | +0.6 | 2.9 | predicted mannonate dehydrogenase (NCBI) | compare |
| b1824 | yobF | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b1139 | lit | +0.6 | 2.6 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b1818 | manY | +0.6 | 1.3 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b0998 | torD | +0.6 | 1.0 | chaperone protein TorD (NCBI) | compare |
| b2367 | emrY | +0.6 | 3.1 | predicted multidrug efflux system (NCBI) | compare |
| b1157 | stfE | +0.6 | 2.6 | no description | compare |
| b0247 | ykfG | +0.6 | 1.1 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1058 | yceO | +0.6 | 0.3 | hypothetical protein (NCBI) | compare |
| b2935 | tktA | +0.6 | 1.0 | transketolase 1, thiamin-binding (NCBI) | compare |
| b1493 | gadB | +0.6 | 0.6 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |