Experiment set56IT067 for Escherichia coli BW25113

Compare to:

M9 Aerobic Capecitabine 500 uM

Group: stress
Media: M9 + Capecitabine (500 uM) + Dimethyl Sulfoxide (1 vol%)
Culturing: Keio_ML9a, microplate, Aerobic, at 37 (C)
By: Ben Guthrie on 2/15/22
Media components: 4 g/L D-Glucose, 2 mM Magnesium sulfate, 0.1 mM Calcium chloride, 12.8 g/L Sodium phosphate dibasic heptahydrate, 3 g/L Potassium phosphate monobasic, 0.5 g/L Sodium Chloride, 1 g/L Ammonium chloride

Specific Phenotypes

For 4 genes in this experiment

For stress Capecitabine in Escherichia coli BW25113

For stress Capecitabine across organisms

SEED Subsystems

Subsystem #Specific
Biogenesis of cytochrome c oxidases 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NAD salvage pathway III (to nicotinamide riboside) 3 3 1
UTP and CTP dephosphorylation I 7 5 2
purine nucleotides degradation II (aerobic) 11 11 3
guanosine nucleotides degradation III 4 4 1
guanosine nucleotides degradation II 4 4 1
inosine 5'-phosphate degradation 4 4 1
adenosine nucleotides degradation I 8 7 2
purine nucleotides degradation I (plants) 12 10 3
guanosine nucleotides degradation I 4 3 1
photosynthesis light reactions 4 1 1
NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane) 4 1 1
adenosine nucleotides degradation II 5 5 1
superpathway of guanosine nucleotides degradation (plants) 6 5 1
superpathway of purines degradation in plants 18 13 3
superpathway of photosynthetic hydrogen production 6 3 1
ureide biosynthesis 7 5 1
tunicamycin biosynthesis 9 2 1
NAD salvage (plants) 11 5 1
oxygenic photosynthesis 17 11 1
ethene biosynthesis V (engineered) 25 18 1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) 26 19 1
1-butanol autotrophic biosynthesis (engineered) 27 19 1