| | gene | name | fitness | t score | description | |
|---|
| b1493 | gadB | +1.8 | 3.2 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4699 | fnrS | +1.0 | 1.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b0990 | cspG | +1.0 | 1.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2498 | upp | +0.9 | 3.8 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2904 | gcvH | +0.9 | 2.7 | glycine cleavage system protein H (NCBI) | compare |
| b2217 | rcsB | +0.8 | 5.6 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3636 | rpmG | +0.8 | 1.3 | 50S ribosomal protein L33 (NCBI) | compare |
| b2814 | metZ | +0.8 | 2.2 | tRNA-Met (NCBI) | compare |
| b2282 | nuoH | +0.7 | 3.5 | NADH dehydrogenase subunit H (NCBI) | compare |
| b1567 | intK | +0.7 | 1.3 | Qin prophage; predicted protein (RefSeq) | compare |
| b0746 | valZ | +0.7 | 3.1 | tRNA-Val (NCBI) | compare |
| b3341 | rpsG | +0.7 | 1.5 | 30S ribosomal protein S7 (NCBI) | compare |
| b1754 | b1754 | +0.7 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1346 | ydaQ | +0.7 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2285 | nuoE | +0.7 | 2.2 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1476 | fdnI | +0.7 | 1.1 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0014 | dnaK | +0.7 | 2.6 | molecular chaperone DnaK (NCBI) | compare |
| b4154 | frdA | +0.6 | 5.7 | fumarate reductase (NCBI) | compare |
| b1360 | ydaV | +0.6 | 1.1 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b2236 | yfaE | +0.6 | 1.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b0858 | ybjO | +0.6 | 2.3 | predicted inner membrane protein (NCBI) | compare |
| b1257 | yciE | +0.6 | 0.4 | hypothetical protein (NCBI) | compare |
| b4406 | yaeP | +0.6 | 2.7 | hypothetical protein (NCBI) | compare |
| b4152 | frdC | +0.6 | 3.6 | fumarate reductase subunit C (NCBI) | compare |
| b1790 | yeaM | +0.6 | 3.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2279 | nuoK | +0.6 | 1.3 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1429 | tehA | +0.6 | 1.2 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b1518 | lsrG | +0.5 | 1.1 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b1842 | holE | +0.5 | 2.2 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1400 | paaY | +0.5 | 2.3 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1394 | paaG | +0.5 | 3.1 | enoyl-CoA hydratase (NCBI) | compare |
| b1370 | insH-5 | +0.5 | 1.6 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b3183 | obgE | +0.5 | 1.0 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0247 | ykfG | +0.5 | 1.1 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b2934 | cmtB | +0.5 | 0.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3228 | sspB | +0.5 | 3.2 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b1148 | ymfM | +0.5 | 1.7 | e14 prophage; predicted protein (NCBI) | compare |
| b1824 | yobF | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1575 | dicB | +0.5 | 1.0 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1186 | nhaB | +0.5 | 3.7 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b3926 | glpK | +0.5 | 4.1 | glycerol kinase (NCBI) | compare |
| b1187 | fadR | +0.5 | 3.6 | fatty acid metabolism regulator (NCBI) | compare |
| b2652 | ileY | +0.5 | 0.7 | tRNA-Ile (NCBI) | compare |
| b4369 | leuP | +0.5 | 0.7 | tRNA-Leu (NCBI) | compare |
| b4505 | insX | +0.5 | 1.1 | predicted IS protein (RefSeq) | compare |
| b2426 | ucpA | +0.4 | 1.8 | putative oxidoreductase (VIMSS) | compare |
| b2288 | nuoA | +0.4 | 1.6 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b3779 | gpp | +0.4 | 4.0 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b3443 | yrhA | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2741 | rpoS | +0.4 | 2.9 | RNA polymerase sigma factor (NCBI) | compare |
| b2356 | yfdM | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1669 | ydhT | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b3107 | yhaL | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4570 | lomR | +0.4 | 1.4 | no description | compare |
| b2283 | nuoG | +0.4 | 3.0 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b4151 | frdD | +0.4 | 2.2 | fumarate reductase subunit D (NCBI) | compare |
| b3166 | truB | +0.4 | 3.1 | tRNA pseudouridine synthase B (NCBI) | compare |
| b0556 | rzpD | +0.4 | 1.7 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b2209 | eco | +0.4 | 1.7 | ecotin precursor (NCBI) | compare |
| b1492 | gadC | +0.4 | 3.0 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b3181 | greA | +0.4 | 2.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3884 | yihW | +0.4 | 2.7 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b2189 | proL | +0.4 | 1.2 | tRNA-Pro (NCBI) | compare |
| b2502 | ppx | +0.4 | 3.0 | exopolyphosphatase (NCBI) | compare |
| b0977 | hyaF | +0.4 | 2.3 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |
| b1823 | cspC | +0.4 | 1.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b2531 | iscR | +0.4 | 0.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b3193 | yrbD | +0.4 | 3.3 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1156 | tfaE | +0.4 | 2.0 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b4522 | yciX_1 | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b3658 | selC | +0.4 | 1.5 | tRNA-Sec (NCBI) | compare |
| b2080 | b2080 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2280 | nuoJ | +0.4 | 2.2 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3512 | GadE | +0.4 | 1.5 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1868 | yecE | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3742 | mioC | +0.4 | 2.4 | flavodoxin (NCBI) | compare |
| b4594 | ymgJ | +0.4 | 1.5 | hypothetical protein (RefSeq) | compare |
| b1343 | dbpA | +0.4 | 2.5 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b0401 | brnQ | +0.4 | 3.1 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b3745 | yieM | +0.4 | 3.4 | predicted von Willibrand factor containing protein (NCBI) | compare |
| b0435 | bolA | +0.4 | 2.5 | possible regulator of murein genes (VIMSS) | compare |
| b0955 | ycbZ | +0.4 | 2.7 | predicted peptidase (NCBI) | compare |
| b2111 | yehD | +0.4 | 1.7 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4153 | frdB | +0.4 | 2.3 | fumarate reductase (anaerobic), Fe-S subunit (NCBI) | compare |
| b0864 | artP | +0.4 | 2.2 | arginine transporter subunit (NCBI) | compare |
| b4133 | cadC | +0.4 | 3.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b1884 | cheR | +0.3 | 2.0 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b1151 | ymfO | +0.3 | 1.5 | e14 prophage; conserved protein (RefSeq) | compare |
| b4232 | fbp | +0.3 | 2.8 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b4630 | ykgP | +0.3 | 1.7 | no description | compare |
| b1242 | ychE | +0.3 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b1227 | narI | +0.3 | 1.9 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b0013 | yaaI | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3390 | aroK | +0.3 | 0.8 | shikimate kinase I (NCBI) | compare |
| b1634 | tppB | +0.3 | 2.1 | putative tripeptide transporter permease (NCBI) | compare |
| b2291 | yfbR | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b1577 | ydfE | +0.3 | 2.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b1523 | yneG | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b4557 | yidD | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1034 | ycdX | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4578 | insP | +0.3 | 1.5 | no description | compare |
| b2376 | ypdI | +0.3 | 1.4 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b3950 | frwB | +0.3 | 1.3 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b1061 | dinI | +0.3 | 1.0 | DNA damage-inducible protein I (NCBI) | compare |
| b1667 | ydhR | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3495 | uspA | +0.3 | 2.8 | universal stress global response regulator (NCBI) | compare |
| b2528 | iscA | +0.3 | 0.8 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b1412 | azoR | +0.3 | 1.5 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b2743 | pcm | +0.3 | 1.5 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b2435 | amiA | +0.3 | 2.2 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b0535 | fimZ | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3816 | corA | +0.3 | 2.6 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b2419 | yfeK | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b4363 | yjjB | +0.3 | 1.8 | conserved inner membrane protein (RefSeq) | compare |
| b0995 | torR | +0.3 | 1.8 | DNA-binding response regulator in two-component regulatory system with TorS (NCBI) | compare |
| b0164 | yaeI | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1735 | chbR | +0.3 | 1.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0502 | ylbG | +0.3 | 0.9 | no description | compare |
| b1028 | ymdE | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0998 | torD | +0.3 | 0.7 | chaperone protein TorD (NCBI) | compare |
| b4509 | ylcG | +0.3 | 0.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.5 | Qin prophage; predicted protein (RefSeq) | compare |
| b0104 | guaC | +0.3 | 2.6 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b1220 | ychO | +0.3 | 1.8 | predicted invasin (RefSeq) | compare |
| b1919 | yedO | +0.3 | 1.4 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b2343 | b2343 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0616 | citE | +0.3 | 1.7 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b1284 | yciT | +0.3 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2136 | yohD | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0758 | galT | +0.3 | 1.9 | galactose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1172 | ymgG | +0.3 | 1.5 | conserved protein, UPF0757 family (RefSeq) | compare |
| b1306 | pspC | +0.3 | 0.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b3236 | mdh | +0.3 | 2.1 | malate dehydrogenase (NCBI) | compare |
| b4135 | yjdC | +0.3 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3068 | ygjF | +0.3 | 1.6 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b1362 | rzpR | +0.3 | 1.3 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2393 | nupC | +0.3 | 1.7 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b3582 | sgbU | +0.3 | 2.1 | probable 3-hexulose-6-phosphate isomerase (VIMSS) | compare |
| b3909 | kdgT | +0.3 | 1.9 | 2-keto-3-deoxy-D-gluconate transport system (VIMSS) | compare |
| b1520 | b1520 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4215 | ytfI | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b1821 | b1821 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2646 | ypjF | +0.3 | 1.2 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b0289 | yagV | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2277 | nuoM | +0.3 | 1.8 | NADH dehydrogenase subunit M (NCBI) | compare |
| b0227 | yafL | +0.3 | 1.6 | predicted lipoprotein and C40 family peptidase (NCBI) | compare |
| b4568 | ytjA | +0.3 | 0.9 | predicted protein (RefSeq) | compare |
| b4396 | rob | +0.3 | 2.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b0463 | acrA | +0.3 | 2.2 | multidrug efflux system (NCBI) | compare |
| b3739 | atpI | +0.3 | 1.8 | membrane-bound ATP synthase, dispensable protein, affects expression of atpB (VIMSS) | compare |
| b2876 | b2876 | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0300 | ykgA | +0.3 | 1.4 | putative ARAC-type regulatory protein (VIMSS) | compare |
| b1648 | b1648 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2281 | nuoI | +0.3 | 1.2 | NADH dehydrogenase subunit I (NCBI) | compare |
| b1259 | yciG | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1565 | ydfV | +0.3 | 1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b1968 | yedV | +0.3 | 1.1 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b0218 | yafU | +0.3 | 1.1 | predicted inner membrane protein (RefSeq) | compare |
| b1465 | narV | +0.3 | 0.6 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1650 | nemA | +0.3 | 1.9 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b1072 | flgA | +0.3 | 1.6 | flagellar basal body P-ring biosynthesis protein A (NCBI) | compare |
| b0232 | yafN | +0.3 | 0.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1710 | btuE | +0.3 | 1.2 | predicted glutathione peroxidase (NCBI) | compare |
| b0384 | psiF | +0.3 | 1.5 | induced by phosphate starvation (VIMSS) | compare |
| b1075 | flgD | +0.3 | 1.2 | flagellar basal body rod modification protein D (NCBI) | compare |
| b1623 | add | +0.3 | 1.0 | adenosine deaminase (NCBI) | compare |
| b0225 | yafQ | +0.3 | 1.3 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1847 | yebF | +0.3 | 0.7 | predicted protein (RefSeq) | compare |
| b4519 | icdC | +0.3 | 1.5 | no description | compare |
| b1428 | ydcK | +0.3 | 1.7 | predicted enzyme (NCBI) | compare |
| b1143 | ymfI | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1553 | ydfP | +0.3 | 1.0 | Qin prophage; conserved protein (NCBI) | compare |
| b2421 | cysM | +0.3 | 1.2 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1289 | ycjD | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3146 | yraL | +0.3 | 1.9 | predicted methyltransferase (NCBI) | compare |
| b3259 | prmA | +0.3 | 1.4 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b1307 | pspD | +0.3 | 0.8 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b2737 | ygbK | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1048 | mdoG | +0.3 | 1.4 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b4653 | yicT | +0.3 | 0.8 | no description | compare |
| b1981 | shiA | +0.3 | 1.8 | shikimate transporter (NCBI) | compare |
| b1041 | csgB | +0.3 | 1.4 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b4387 | ytjB | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1380 | ldhA | +0.3 | 0.7 | D-lactate dehydrogenase (NCBI) | compare |
| b1696 | ydiP | +0.3 | 0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2674 | nrdI | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b0340 | cynS | +0.3 | 1.2 | cyanate hydratase (NCBI) | compare |
| b1904 | yecR | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4277 | yjgZ | +0.3 | 1.7 | KpLE2 phage-like element; predicted protein (NCBI) | compare |
| b0843 | ybjH | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b3157 | yhbT | +0.3 | 1.5 | predicted lipid carrier protein (NCBI) | compare |
| b3500 | gor | +0.3 | 0.5 | glutathione reductase (NCBI) | compare |
| b0473 | htpG | +0.3 | 2.2 | heat shock protein 90 (NCBI) | compare |
| b1804 | rnd | +0.3 | 1.3 | ribonuclease D (NCBI) | compare |
| b1110 | ycfJ | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b3239 | yhcO | +0.3 | 1.5 | predicted barnase inhibitor (NCBI) | compare |
| b1950 | fliR | +0.3 | 1.1 | flagellar biosynthesis protein R (NCBI) | compare |
| b3501 | arsR | +0.3 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1658 | purR | +0.3 | 1.9 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |