| | gene | name | fitness | t score | description | |
|---|
| b1882 | cheY | +1.7 | 0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3183 | obgE | +1.7 | 2.5 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b2285 | nuoE | +1.5 | 4.4 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3636 | rpmG | +1.4 | 3.6 | 50S ribosomal protein L33 (NCBI) | compare |
| b2287 | nuoB | +1.4 | 5.9 | NADH dehydrogenase subunit B (NCBI) | compare |
| b1480 | sra | +1.2 | 1.5 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b2281 | nuoI | +1.1 | 4.4 | NADH dehydrogenase subunit I (NCBI) | compare |
| b4603 | rseX | +1.1 | 1.0 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2502 | ppx | +1.1 | 7.9 | exopolyphosphatase (NCBI) | compare |
| b3779 | gpp | +1.1 | 9.5 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b2277 | nuoM | +1.0 | 7.1 | NADH dehydrogenase subunit M (NCBI) | compare |
| b3745 | yieM | +1.0 | 9.8 | predicted von Willibrand factor containing protein (NCBI) | compare |
| b2906 | visC | +1.0 | 6.6 | hypothetical protein (NCBI) | compare |
| b0955 | ycbZ | +1.0 | 7.7 | predicted peptidase (NCBI) | compare |
| b2498 | upp | +1.0 | 3.7 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2280 | nuoJ | +0.9 | 5.8 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3746 | yieN | +0.9 | 8.6 | putative 2-component regulator (VIMSS) | compare |
| b3495 | uspA | +0.9 | 8.0 | universal stress global response regulator (NCBI) | compare |
| b1573 | ydfC | +0.9 | 1.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b4232 | fbp | +0.9 | 7.2 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b2278 | nuoL | +0.9 | 6.3 | NADH dehydrogenase subunit L (NCBI) | compare |
| b2283 | nuoG | +0.8 | 5.4 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b0191 | yaeJ | +0.8 | 4.8 | hypothetical protein (NCBI) | compare |
| b3512 | GadE | +0.8 | 3.8 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0401 | brnQ | +0.8 | 6.1 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b3390 | aroK | +0.8 | 1.1 | shikimate kinase I (NCBI) | compare |
| b2276 | nuoN | +0.8 | 4.3 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2217 | rcsB | +0.8 | 6.1 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1658 | purR | +0.8 | 4.4 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0104 | guaC | +0.8 | 6.3 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b0232 | yafN | +0.8 | 0.3 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1493 | gadB | +0.7 | 0.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4154 | frdA | +0.7 | 6.5 | fumarate reductase (NCBI) | compare |
| b4153 | frdB | +0.7 | 5.5 | fumarate reductase (anaerobic), Fe-S subunit (NCBI) | compare |
| b2421 | cysM | +0.7 | 3.6 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2284 | nuoF | +0.7 | 2.9 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1286 | rnb | +0.7 | 1.7 | exoribonuclease II (NCBI) | compare |
| b2286 | nuoC | +0.7 | 3.5 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b4151 | frdD | +0.7 | 2.3 | fumarate reductase subunit D (NCBI) | compare |
| b1583 | ynfB | +0.7 | 1.9 | hypothetical protein (NCBI) | compare |
| b2497 | uraA | +0.7 | 5.5 | uracil transporter (NCBI) | compare |
| b1492 | gadC | +0.7 | 3.7 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b4152 | frdC | +0.7 | 2.9 | fumarate reductase subunit C (NCBI) | compare |
| b1764 | selD | +0.7 | 3.3 | selenophosphate synthetase (NCBI) | compare |
| b2939 | yqgB | +0.6 | 1.5 | predicted protein (RefSeq) | compare |
| b1161 | ycgX | +0.6 | 0.7 | hypothetical protein (NCBI) | compare |
| b0827 | moeA | +0.6 | 4.0 | molybdopterin biosynthesis protein (NCBI) | compare |
| b1553 | ydfP | +0.6 | 2.1 | Qin prophage; conserved protein (NCBI) | compare |
| b3895 | fdhD | +0.6 | 4.5 | formate dehydrogenase accessory protein (NCBI) | compare |
| b4222 | ytfP | +0.6 | 3.6 | hypothetical protein (NCBI) | compare |
| b3778 | rep | +0.6 | 3.9 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4414 | tff | +0.6 | 1.6 | unknown RNA (NCBI) | compare |
| b1007 | b1007 | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4695 | ykgT | +0.6 | 1.9 | no description | compare |
| b4064 | yjcD | +0.6 | 4.3 | predicted permease (NCBI) | compare |
| b1186 | nhaB | +0.6 | 4.2 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b1070 | flgN | +0.6 | 1.3 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3002 | yqhA | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b1343 | dbpA | +0.6 | 3.8 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b2282 | nuoH | +0.6 | 2.4 | NADH dehydrogenase subunit H (NCBI) | compare |
| b1246 | oppD | +0.6 | 4.3 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1153 | ymfQ | +0.6 | 2.3 | e14 prophage; conserved protein (NCBI) | compare |
| b3590 | selB | +0.6 | 5.1 | selenocysteinyl-tRNA-specific translation factor (NCBI) | compare |
| b2096 | gatY | +0.6 | 4.0 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b4369 | leuP | +0.6 | 2.5 | tRNA-Leu (NCBI) | compare |
| b3042 | b3042 | +0.6 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b1548 | nohA | +0.6 | 1.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b2948 | yqgE | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2480 | bcp | +0.5 | 3.6 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b0108 | ppdD | +0.5 | 2.2 | predicted major pilin subunit (NCBI) | compare |
| b2688 | gshA | +0.5 | 3.7 | glutamate--cysteine ligase (NCBI) | compare |
| b3816 | corA | +0.5 | 4.1 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0219 | yafV | +0.5 | 1.9 | predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) | compare |
| b2814 | metZ | +0.5 | 1.2 | tRNA-Met (NCBI) | compare |
| b4408 | csrB | +0.5 | 2.8 | CsrA-binding sRNA, antagonizing CsrA regulation (NCBI) | compare |
| b1524 | yneH | +0.5 | 0.6 | predicted glutaminase (NCBI) | compare |
| b3166 | truB | +0.5 | 3.5 | tRNA pseudouridine synthase B (NCBI) | compare |
| b1519 | tam | +0.5 | 2.4 | trans-aconitate 2-methyltransferase (NCBI) | compare |
| b1696 | ydiP | +0.5 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3236 | mdh | +0.5 | 3.1 | malate dehydrogenase (NCBI) | compare |
| b1454 | yncG | +0.5 | 1.4 | predicted enzyme (NCBI) | compare |
| b3206 | npr | +0.5 | 3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2236 | yfaE | +0.5 | 2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2168 | fruK | +0.5 | 0.7 | 1-phosphofructokinase (NCBI) | compare |
| b3892 | fdoI | +0.5 | 3.8 | formate dehydrogenase-O, cytochrome b556 subunit (NCBI) | compare |
| b2279 | nuoK | +0.5 | 0.6 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0790 | ybhP | +0.5 | 2.9 | predicted DNase (NCBI) | compare |
| b1038 | csgF | +0.5 | 1.1 | predicted transport protein (NCBI) | compare |
| b0167 | glnD | +0.5 | 2.3 | PII uridylyl-transferase (NCBI) | compare |
| b3181 | greA | +0.5 | 2.2 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1187 | fadR | +0.5 | 2.0 | fatty acid metabolism regulator (NCBI) | compare |
| b3591 | selA | +0.5 | 4.3 | selenocysteine synthase (NCBI) | compare |
| b3537 | yhjT | +0.5 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b0357 | yaiN | +0.5 | 0.9 | putative alpha helix chain (VIMSS) | compare |
| b2346 | vacJ | +0.5 | 3.1 | predicted lipoprotein (NCBI) | compare |
| b1143 | ymfI | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1582 | ynfA | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b1428 | ydcK | +0.5 | 3.1 | predicted enzyme (NCBI) | compare |
| b2528 | iscA | +0.5 | 1.2 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b4409 | blr | +0.5 | 3.4 | beta-lactam resistance membrane protein (NCBI) | compare |
| b1607 | ydgC | +0.5 | 0.9 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b0934 | ycbM | +0.5 | 1.1 | putative transport system permease protein (VIMSS) | compare |
| b4416 | rybA | +0.5 | 1.1 | unknown RNA (NCBI) | compare |
| b2946 | yggJ | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2047 | wcaJ | +0.5 | 2.6 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b0435 | bolA | +0.5 | 3.1 | possible regulator of murein genes (VIMSS) | compare |
| b2664 | ygaE | +0.5 | 2.7 | putative transcriptional regulator (VIMSS) | compare |
| b4431 | rprA | +0.5 | 1.2 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b4521 | ycgI | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b1789 | yeaL | +0.5 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b3884 | yihW | +0.5 | 2.4 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b1307 | pspD | +0.5 | 1.3 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1171 | b1171 | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4592 | yccB | +0.5 | 1.4 | hypothetical protein (RefSeq) | compare |
| b1336 | ydaH | +0.5 | 1.8 | putative pump protein (transport) (VIMSS) | compare |
| b1247 | oppF | +0.4 | 2.6 | oligopeptide transporter subunit (NCBI) | compare |
| b1243 | oppA | +0.4 | 2.9 | oligopeptide transporter subunit (NCBI) | compare |
| b2735 | ygbI | +0.4 | 2.3 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1217 | chaB | +0.4 | 1.1 | cation transport regulator (NCBI) | compare |
| b0931 | pncB | +0.4 | 2.8 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b4133 | cadC | +0.4 | 4.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1412 | azoR | +0.4 | 1.9 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b3894 | fdoG | +0.4 | 4.2 | formate dehydrogenase-O, large subunit (NCBI) | compare |
| b4294 | insA-7 | +0.4 | 1.3 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b2953 | yggU | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0014 | dnaK | +0.4 | 1.3 | molecular chaperone DnaK (NCBI) | compare |
| b0617 | citD | +0.4 | 1.0 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b0210 | yafE | +0.4 | 1.7 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b2156 | lysP | +0.4 | 3.5 | lysine transporter (NCBI) | compare |
| b3190 | yrbA | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4578 | insP | +0.4 | 2.1 | no description | compare |
| b4126 | yjdI | +0.4 | 3.9 | hypothetical protein (NCBI) | compare |
| b2634 | yfjR | +0.4 | 2.2 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0065 | yabI | +0.4 | 2.8 | conserved inner membrane protein (NCBI) | compare |
| b2063 | yegH | +0.4 | 3.2 | putative transport protein (VIMSS) | compare |
| b1147 | ymfL | +0.4 | 1.6 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0059 | hepA | +0.4 | 3.7 | ATP-dependent helicase HepA (NCBI) | compare |
| b2050 | wcaI | +0.4 | 1.4 | predicted glycosyl transferase (NCBI) | compare |
| b1942 | fliJ | +0.4 | 0.9 | flagellar biosynthesis chaperone (NCBI) | compare |
| b2198 | ccmD | +0.4 | 1.8 | cytochrome c biogenesis protein (NCBI) | compare |
| b1467 | narY | +0.4 | 2.4 | nitrate reductase 2 (NRZ), beta subunit (NCBI) | compare |
| b1562 | hokD | +0.4 | 1.5 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b4468 | glcE | +0.4 | 2.3 | glycolate oxidase FAD binding subunit (NCBI) | compare |
| b3893 | fdoH | +0.4 | 3.3 | formate dehydrogenase-O, Fe-S subunit (NCBI) | compare |
| b3071 | yqjI | +0.4 | 1.5 | predicted transcriptional regulator (NCBI) | compare |
| b4533 | ynfO | +0.4 | 0.9 | Qin prophage; predicted protein (NCBI) | compare |
| b0261 | mmuM | +0.4 | 2.8 | homocysteine methyltransferase (NCBI) | compare |
| b1244 | oppB | +0.4 | 3.0 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2128 | yehW | +0.4 | 1.5 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1648 | b1648 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3939 | metB | +0.4 | 2.7 | cystathionine gamma-synthase (NCBI) | compare |
| b1245 | oppC | +0.4 | 2.6 | oligopeptide transporter subunit (NCBI) | compare |
| b3670 | ilvN | +0.4 | 2.6 | acetolactate synthase small subunit (NCBI) | compare |
| b1550 | b1550 | +0.4 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1792 | yeaO | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2080 | b2080 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2186 | yejK | +0.4 | 2.9 | nucleoid-associated protein NdpA (NCBI) | compare |
| b2466 | ypfG | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b3009 | yghB | +0.4 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b3192 | yrbC | +0.4 | 3.0 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b2646 | ypjF | +0.4 | 1.4 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b1946 | fliN | +0.4 | 2.0 | flagellar motor switch protein (NCBI) | compare |
| b4454 | rdlD | +0.4 | 2.0 | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD (RefSeq) | compare |
| b3126 | garL | +0.4 | 2.0 | alpha-dehydro-beta-deoxy-D-glucarate aldolase (NCBI) | compare |
| b3191 | yrbB | +0.4 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b1074 | flgC | +0.4 | 1.3 | flagellar basal-body rod protein C (NCBI) | compare |
| b1729 | ydjN | +0.4 | 2.2 | predicted transporter (NCBI) | compare |
| b1560 | ydfU | +0.4 | 1.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b2903 | gcvP | +0.4 | 3.0 | glycine dehydrogenase (NCBI) | compare |
| b1572 | ydfB | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1728 | ydjM | +0.4 | 1.5 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b1791 | yeaN | +0.4 | 1.8 | predicted transporter (NCBI) | compare |
| b0784 | moaD | +0.4 | 1.6 | molybdopterin synthase, small subunit (NCBI) | compare |
| b4394 | yjjX | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1295 | ymjA | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1219 | ychN | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0292 | yagY | +0.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b1427 | rimL | +0.4 | 1.7 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b4505 | insX | +0.4 | 0.7 | predicted IS protein (RefSeq) | compare |
| b1387 | maoC | +0.4 | 1.9 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b1951 | rcsA | +0.4 | 0.2 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b3146 | yraL | +0.3 | 2.4 | predicted methyltransferase (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.0 | no description | compare |
| b1348 | lar | +0.3 | 0.7 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2886 | ygfS | +0.3 | 2.6 | putative oxidoreductase, Fe-S subunit (VIMSS) | compare |
| b3635 | mutM | +0.3 | 2.9 | formamidopyrimidine-DNA glycosylase (NCBI) | compare |
| b1565 | ydfV | +0.3 | 1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b0431 | cyoB | +0.3 | 2.9 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b4551 | yheV | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b2440 | eutC | +0.3 | 2.4 | ethanolamine ammonia-lyase small subunit (NCBI) | compare |
| b1301 | puuB | +0.3 | 2.1 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | compare |
| b0975 | hyaD | +0.3 | 1.9 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b4194 | ulaB | +0.3 | 1.5 | L-ascorbate-specific enzyme IIB component of PTS (NCBI) | compare |
| b3891 | fdhE | +0.3 | 2.8 | formate dehydrogenase accessory protein FdhE (NCBI) | compare |
| b3131 | agaR | +0.3 | 1.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4406 | yaeP | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b4269 | yjgB | +0.3 | 2.0 | putative oxidoreductase (VIMSS) | compare |
| b3031 | yqiA | +0.3 | 1.7 | predicted esterase (NCBI) | compare |
| b3658 | selC | +0.3 | 1.1 | tRNA-Sec (NCBI) | compare |
| b2267 | elaA | +0.3 | 1.9 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |