Experiment set55S345 for Pseudomonas putida KT2440

Compare to:

TNT nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.9 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_1079 -5.3 -7.2 Ornithine carbamoyltransferase compare
PP_0967 -5.2 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -5.2 -12.9 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.2 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_5098 -5.1 -10.9 methionine biosynthesis protein MetW compare
PP_1988 -5.0 -11.4 3-isopropylmalate dehydrogenase compare
PP_2168 -4.8 -12.6 Transaldolase compare
PP_4678 -4.7 -19.4 Ketol-acid reductoisomerase compare
PP_4909 -4.6 -7.0 phosphoserine phosphatase compare
PP_1088 -4.6 -12.9 Argininosuccinate synthase compare
PP_0417 -4.6 -22.4 Anthranilate synthase component 1 compare
PP_5185 -4.5 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -4.5 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -4.3 -4.2 Argininosuccinate lyase compare
PP_0422 -4.3 -6.7 Indole-3-glycerol phosphate synthase compare
PP_4680 -4.3 -16.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -4.2 -15.8 homoserine O-acetyltransferase compare
PP_0966 -4.2 -13.4 Histidinol dehydrogenase compare
PP_5014 -4.2 -6.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -4.1 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.0 -6.0 tryptophan synthase beta chain compare
PP_1384 -4.0 -9.4 Probable efflux pump outer membrane protein TtgC compare
PP_4890 -3.9 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_2001 -3.9 -11.9 O-succinylhomoserine sulfhydrylase compare
PP_0965 -3.9 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1995 -3.8 -10.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0289 -3.8 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0421 -3.6 -8.1 Anthranilate phosphoribosyltransferase compare
PP_0292 -3.6 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1231 -3.5 -8.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5015 -3.4 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5095 -3.4 -2.2 pyrroline-5-carboxylate reductase compare
PP_0082 -3.4 -5.6 tryptophan synthase alpha chain compare
PP_5128 -3.4 -8.1 Dihydroxy-acid dehydratase compare
PP_4937 -3.4 -5.0 toluene tolerance protein compare
PP_2371 -3.2 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5289 -3.1 -6.3 Acetylglutamate kinase compare
PP_2327 -3.1 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -3.0 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_4723 -2.9 -5.6 Carbamoyl-phosphate synthase large chain compare
PP_5347 -2.9 -13.3 pyruvate carboxylase subunit A compare
PP_5346 -2.8 -11.2 pyruvate carboxylase subunit B compare
PP_5155 -2.8 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -2.7 -4.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0787 -2.7 -5.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1233 -2.7 -6.4 sulfurtransferase compare
PP_1025 -2.5 -8.2 2-isopropylmalate synthase compare
PP_5348 -2.5 -10.1 Transcriptional regulator, LysR family compare
PP_4696 -2.5 -5.5 Nitrogen regulation protein NR(I) compare
PP_0691 -2.4 -3.2 Glutamate 5-kinase compare
PP_2370 -2.4 -2.4 conserved protein of unknown function compare
PP_1385 -2.3 -11.2 Probable efflux pump membrane transporter TtgB compare
PP_1386 -2.3 -7.2 Probable efflux pump periplasmic linker TtgA conserved
PP_0291 -2.3 -3.1 conserved protein of unknown function compare
PP_2378 -2.2 -2.9 Fe/S biogenesis protein NfuA compare
PP_1664 -2.2 -4.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1826 -2.1 -2.7 Hydrolase, isochorismatase family compare
PP_5114 -2.1 -2.3 putative adenine methyltransferase compare
PP_3241 -2.0 -1.1 conserved exported protein of unknown function compare
PP_4700 -2.0 -3.0 pantothenate synthetase compare
PP_2475 -2.0 -4.8 Transcriptional regulator, TetR family compare
PP_0195 -1.9 -3.5 conserved protein of unknown function compare
PP_0339 -1.9 -1.8 Pyruvate dehydrogenase E1 component compare
PP_2976 -1.8 -2.4 putative transposase compare
PP_0961 -1.7 -5.8 toluene tolerance protein compare
PP_5303 -1.7 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4268 -1.7 -1.3 nucleoid-associated broad specificity regulator compare
PP_0420 -1.6 -5.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2429 -1.6 -2.8 putative Membrane protein compare
PP_5104 -1.6 -6.5 thiazole synthase compare
PP_0345 -1.6 -3.9 putative Heptose kinase WapP compare
PP_4724 -1.5 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_5054 -1.5 -3.1 glutaredoxin 3 compare
PP_0127 -1.5 -3.1 Thiol:disulfide interchange protein compare
PP_0735 -1.5 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_2163 -1.5 -5.9 VacJ lipoprotein compare
PP_2306 -1.5 -1.7 conserved exported protein of unknown function compare
PP_4782 -1.4 -4.3 Phosphomethylpyrimidine kinase compare
PP_2356 -1.4 -7.6 putative Phytochrome family protein compare
PP_5007 -1.4 -2.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1232 -1.4 -6.3 conserved exported protein of unknown function compare
PP_3417 -1.4 -4.5 D-gluconate transporter compare
PP_1214 -1.4 -2.0 putative transcriptional regulatory protein compare
PP_0960 -1.3 -3.6 phospholipid ABC transporter binding protein compare
PP_1348 -1.3 -5.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2337 -1.3 -2.1 aconitate isomerase compare
PP_3508 -1.3 -3.1 Protein CobW compare
PP_1054 -1.3 -1.2 Type II secretion pathway protein XcpZ compare
PP_0962 -1.3 -2.4 toluene-tolerance protein compare
PP_4699 -1.3 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4726 -1.3 -2.4 Chaperone protein DnaJ compare
PP_4532 -1.3 -1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0164 -1.3 -5.6 conserved protein of unknown function compare
PP_2354 -1.2 -6.7 Sensory box histidine kinase/response regulator compare
PP_0685 -1.2 -2.3 conserved protein of unknown function compare
PP_0001 -1.2 -1.4 probable chromosome-partitioning protein compare
PP_2348 -1.2 -4.5 Sensor histidine kinase compare
PP_0435 -1.2 -9.4 Peptidase, M23/M37 family compare
PP_5331 -1.2 -4.2 Long-chain acyl-CoA thioester hydrolase compare
PP_4922 -1.2 -7.6 Phosphomethylpyrimidine synthase compare
PP_5456 -1.2 -2.3 conserved protein of unknown function compare
PP_0346 -1.2 -5.8 putative Heptose kinase WapQ compare
PP_1678 -1.2 -2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0913 -1.1 -5.0 conserved exported protein of unknown function compare
PP_0809 -1.1 -5.7 disulfide bond formation protein B compare
PP_0959 -1.1 -1.9 phospholipid ABC transporter compare
PP_4355 -1.1 -2.3 flagellar export apparatus subunit compare
PP_0834 -1.1 -1.1 Sec translocation complex subunit YajC compare
PP_5350 -1.1 -2.3 Transcriptional regulator, RpiR family compare
PP_1328 -1.1 -2.3 Protein MraZ compare
PP_2748 -1.0 -3.2 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3935 -1.0 -2.9 conserved protein of unknown function compare
PP_1022 -1.0 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_3105 -1.0 -1.7 conserved membrane protein of unknown function compare
PP_5423 -1.0 -2.1 conserved membrane protein of unknown function compare
PP_3821 -1.0 -4.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3930 -1.0 -2.6 conserved exported protein of unknown function compare
PP_0958 -1.0 -3.6 phospholipid ABC transporter ATP-binding subunit compare
PP_0377 -0.9 -1.4 coenzyme PQQ synthesis protein D compare
PP_1303 -0.9 -4.5 Sulfate adenylyltransferase subunit 2 compare
PP_5227 -0.9 -4.5 diaminopimelate decarboxylase compare
PP_0378 -0.9 -4.9 Pyrroloquinoline-quinone synthase compare
PP_0401 -0.9 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_2622 -0.9 -3.5 conserved protein of unknown function compare
PP_4826 -0.9 -3.1 Precorrin-3B C17-methyltransferase compare
PP_1493 -0.9 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3989 -0.9 -3.4 DNA-cytosine methyltransferase compare
PP_4126 -0.9 -0.6 NADH-quinone oxidoreductase subunit I compare
PP_0888 -0.9 -0.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2414 -0.9 -0.6 conserved exported protein of unknown function compare
PP_1941 -0.9 -4.1 conserved protein of unknown function compare
PP_1676 -0.9 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0376 -0.9 -4.8 Coenzyme PQQ synthesis protein E compare
PP_5328 -0.9 -3.4 putative phosphate transport system permease protein compare
PP_1304 -0.9 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5216 -0.9 -2.0 exopolyphosphatase compare
PP_0381 -0.9 -4.2 Coenzyme PQQ synthesis protein F compare
PP_0087 -0.9 -2.8 conserved exported protein of unknown function compare
PP_1444 -0.9 -5.7 quinoprotein glucose dehydrogenase compare
PP_2747 -0.9 -1.6 conserved protein of unknown function compare
PP_1808 -0.9 -1.9 glucose-6-phosphate isomerase compare
PP_1656 -0.9 -3.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_4471 -0.9 -3.0 Magnesium transporter compare
PP_3475 -0.9 -4.1 putative type II secretory pathway, pseudopilin pulG-related signal peptide protein compare
PP_4368 -0.9 -3.0 flagellar motor switch protein compare
PP_2499 -0.8 -1.9 conserved protein of unknown function compare
PP_5583 -0.8 -1.5 conserved protein of unknown function compare
PP_5658 -0.8 -2.8 protein of unknown function compare
PP_1362 -0.8 -2.0 pyruvate kinase II compare
PP_4370 -0.8 -3.1 Flagellar hook-basal body complex protein FliE compare
PP_2136 -0.8 -1.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1293 -0.8 -1.5 molybdopterin synthase small subunit compare
PP_1366 -0.8 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0980 -0.8 -3.0 Probable cytosol aminopeptidase compare
PP_3819 -0.8 -3.6 glutathione reductase (NADPH) compare
PP_1677 -0.8 -3.2 Adenosyl-cobyric acid synthase compare
PP_4804 -0.8 -1.4 RlpA-like lipoprotein compare
PP_2375 -0.8 -5.4 cobalamin-dependent methionine synthase compare
PP_0379 -0.8 -3.2 Coenzyme PQQ synthesis protein B compare
PP_0949 -0.8 -4.1 putative ATP-binding protein UPF0042 compare
PP_3398 -0.8 -1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2144 -0.8 -2.4 Transcriptional regulator, TetR family compare
PP_0048 -0.8 -1.2 conserved protein of unknown function compare
PP_4133 -0.8 -1.6 Transcriptional regulator-related protein compare
PP_0368 -0.8 -4.5 putative Acyl-CoA dehydrogenase compare
PP_0362 -0.8 -5.5 Biotin synthase compare
PP_4362 -0.8 -2.0 conserved protein of unknown function compare
PP_0833 -0.8 -0.9 queuine tRNA-ribosyltransferase compare
PP_4124 -0.8 -1.4 NADH-quinone oxidoreductase subunit G compare
PP_4593 -0.8 -1.1 conserved protein of unknown function compare
PP_0380 -0.8 -4.3 Coenzyme PQQ synthesis protein A compare
PP_5035 -0.8 -3.2 Histidine utilization repressor compare
PP_4262 -0.8 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1207 -0.8 -3.1 conserved protein of unknown function compare
PP_4695 -0.8 -4.5 Sensory box histidine kinase compare
PP_4642 -0.7 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_1344 -0.7 -0.9 conserved protein of unknown function compare
PP_5380 -0.7 -6.2 copper resistance protein A compare
PP_4099 -0.7 -6.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4517 -0.7 -1.1 conserved protein of unknown function compare
PP_2928 -0.7 -3.9 Saccharopine dehydrogenase compare
PP_0063 -0.7 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0003 -0.7 -2.0 16S RNA methyltransferase compare
PP_2077 -0.7 -3.4 diaminopimelate decarboxylase compare
PP_0855 -0.7 -1.9 conserved protein of unknown function compare
PP_3376 -0.7 -3.5 putative phosphonate dehydrogenase compare
PP_4952 -0.7 -0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3164 -0.7 -1.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1561 -0.7 -2.8 putative Phage holin compare
PP_1912 -0.7 -2.7 Phosphate acyltransferase compare
PP_2847 -0.7 -1.0 Urease accessory protein UreJ compare
PP_3286 -0.7 -2.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0880 -0.7 -2.5 dipeptide ABC transporter - putative membrane subunit compare
PP_1374 -0.7 -2.3 conserved protein of unknown function compare
PP_2653 -0.7 -1.6 Transcriptional regulator, Cro/CI family compare
PP_4424 -0.7 -1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4977 -0.7 -4.0 5,10-methylenetetrahydrofolate reductase compare
PP_0905 -0.7 -1.5 conserved exported protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Trinitrotoluene in Pseudomonas putida KT2440

For nitrogen source Trinitrotoluene across organisms