Experiment set55S345 for Pseudomonas putida KT2440

Compare to:

TNT nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_5667 +1.2 3.3 putative microcin B17-like-processing protein, McbC family compare
PP_1186 +1.2 1.6 two component system DNA-binding transcriptional dual regulator compare
PP_3903 +1.1 1.9 conserved protein of unknown function compare
PP_2931 +1.1 3.7 conserved protein of unknown function compare
PP_1632 +1.1 1.9 conserved protein of unknown function compare
PP_2256 +1.1 3.6 Transcriptional regulator, Cro/CI family compare
PP_4223 +1.1 1.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2031 +1.1 1.8 conserved protein of unknown function compare
PP_3614 +1.0 3.1 conserved membrane protein of unknown function compare
PP_3365 +1.0 1.4 Acetolactate synthase compare
PP_3000 +1.0 3.1 MaoC domain protein compare
PP_1164 +1.0 2.1 Transcriptional regulator, LysR family compare
PP_3519 +1.0 0.8 putative Lipoprotein compare
PP_3052 +1.0 1.3 conserved protein of unknown function compare
PP_2152 +0.9 1.7 glycerophosphoryl diester phosphodiesterase compare
PP_4258 +0.9 3.5 cytochrome c oxidase subunit, cbb3-type compare
PP_2028 +0.9 2.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0065 +0.9 1.3 NAD-binding component of TrK potassium transporter compare
PP_4519 +0.9 7.0 Agglutination protein compare
PP_1045 +0.9 1.7 Type II secretion pathway protein XcpP compare
PP_1326 +0.8 1.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2196 +0.8 2.0 agmatinase compare
PP_0643 +0.8 1.2 protein of unknown function compare
PP_0313 +0.8 2.2 putative electron transfer flavoprotein beta subunit compare
PP_5145 +0.8 7.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_t13 +0.8 1.7 tRNA-Lys compare
PP_3058 +0.8 2.4 conserved protein of unknown function compare
PP_3888 +0.8 2.7 conserved protein of unknown function compare
PP_1445 +0.8 3.9 carbohydrate-selective porin compare
PP_2313 +0.8 1.8 conserved membrane protein of unknown function compare
PP_4373 +0.8 4.9 Transcriptional regulator FleQ compare
PP_0165 +0.8 5.9 GGDEF domain protein compare
PP_3415 +0.8 3.7 Transcriptional regulator, LacI family compare
PP_4902 +0.8 1.3 Oligoribonuclease compare
PP_0547 +0.7 2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4910 +0.7 1.0 conserved protein of unknown function compare
PP_0846 +0.7 0.8 DnaK-like molecular chaperone specific for IscU compare
PP_0352 +0.7 3.0 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1713 +0.7 1.9 Transcriptional regulator PcaQ compare
PP_1020 +0.7 1.5 putative glucose-6-phosphate 1-epimerase compare
PP_0167 +0.7 6.1 Toxin secretion ATP-binding protein compare
PP_3333 +0.7 1.5 conserved protein of unknown function compare
PP_0168 +0.7 6.4 putative surface adhesion protein compare
PP_0166 +0.7 5.6 HlyD family secretion protein compare
PP_5489 +0.7 1.8 conserved protein of unknown function compare
PP_2010 +0.7 3.7 Cytochrome b561 compare
PP_t29 +0.7 0.7 tRNA-Ala compare
PP_5085 +0.7 3.0 malic enzyme B compare
PP_5483 +0.7 1.7 conserved protein of unknown function compare
PP_0512 +0.7 1.4 hypothetical protein compare
PP_0630 +0.7 0.7 DNA gyrase inhibitor YacG compare
PP_1536 +0.7 2.1 conserved protein of unknown function compare
PP_5008 +0.7 1.7 Poly granule-associated protein compare
PP_0989 +0.7 2.1 glycine cleavage system H protein 1 compare
PP_2668 +0.7 1.0 ABC efflux transporter, ATP-binding protein compare
PP_5505 +0.7 2.1 conserved transmembrane protein of unknown function compare
PP_1113 +0.7 3.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4913 +0.6 2.6 conserved protein of unknown function compare
PP_1051 +0.6 2.5 Type II secretion pathway protein XcpV compare
PP_2025 +0.6 1.4 Exonuclease SbcD compare
PP_5571 +0.6 1.0 conserved protein of unknown function compare
PP_1322 +0.6 0.6 putative Lipoprotein compare
PP_0792 +0.6 3.3 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_4846 +0.6 2.8 L-amino acid N-acyltransferase compare
PP_5073 +0.6 1.2 conserved exported protein of unknown function compare
PP_3021 +0.6 2.9 Transporter, LysE family compare
PP_3916 +0.6 2.1 conserved protein of unknown function compare
PP_1544 +0.6 2.9 conserved protein of unknown function compare
PP_3481 +0.6 1.5 conserved exported protein of unknown function compare
PP_1135 +0.6 3.8 conserved exported protein of unknown function compare
PP_3460 +0.6 1.6 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4098 +0.6 1.2 UvrABC system protein C compare
PP_4690 +0.6 2.2 Rieske 2Fe-2S family protein compare
PP_4171 +0.6 5.1 conserved exported protein of unknown function compare
PP_4500 +0.6 2.3 TrpH family protein compare
PP_0801 +0.6 1.1 conserved exported protein of unknown function compare
PP_2675 +0.6 2.3 Cytochrome c-type protein compare
PP_1401 +0.6 2.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5022 +0.6 1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_1692 +0.6 1.5 conserved protein of unknown function compare
PP_2889 +0.6 2.4 putative Transmembrane regulator PrtR compare
PP_4340 +0.6 1.8 response regulator for chemotactic signal transduction compare
PP_1812 +0.6 1.3 conserved protein of unknown function compare
PP_3332 +0.6 1.6 putative cytochrome c-type protein compare
PP_4479 +0.6 2.3 arginine N-succinyltransferase, subunit beta compare
PP_1774 +0.6 1.4 conserved exported protein of unknown function compare
PP_5569 +0.6 1.3 protein of unknown function of phage origin compare
PP_5457 +0.5 2.2 conserved protein of unknown function compare
PP_3197 +0.5 1.4 Glyoxalase family protein compare
PP_2595 +0.5 1.9 putative ABC transporter, permease/ATP-binding protein compare
PP_3715 +0.5 1.6 Muconate cycloisomerase 1 compare
PP_3730 +0.5 1.2 Transcriptional regulatory protein AruR compare
PP_1439 +0.5 0.7 conserved exported protein of unknown function compare
PP_1455 +0.5 1.0 conserved protein of unknown function compare
PP_0607 +0.5 2.1 putative Type IV pili biogenesis protein FimT compare
PP_4156 +0.5 1.4 Transcriptional regulator, LysR family compare
PP_4483 +0.5 3.2 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_4308 +0.5 2.6 Transcriptional regulator, AsnC family compare
PP_1998 +0.5 2.2 putative cell division protein compare
PP_4828 +0.5 0.6 Precorrin-8X methylmutase compare
PP_5102 +0.5 1.8 conserved hypothetical protein compare
PP_2601 +0.5 2.2 Transcriptional regulator, IclR family compare
PP_3864 +0.5 1.9 putative Phage FluMu DNA circulation protein compare
PP_4541 +0.5 1.4 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_0937 +0.5 1.7 endoribonuclease G (RNAse G) compare
PP_3449 +0.5 0.9 conserved exported protein of unknown function compare
PP_2404 +0.5 1.7 conserved exported protein of unknown function compare
PP_2050 +0.5 1.9 conserved protein of unknown function compare
PP_1702 +0.5 1.4 Recombination-associated protein RdgC compare
PP_1036 +0.5 2.5 membrane-bound lytic murein transglycosylase F compare
PP_2854 +0.5 1.4 conserved exported protein of unknown function compare
PP_2925 +0.5 1.9 malate:quinone oxidoreductase compare
PP_0109 +0.5 2.9 conserved membrane protein of unknown function compare
PP_2032 +0.5 1.9 putative ATPase compare
PP_5508 +0.5 0.7 conserved protein of unknown function compare
PP_4837 +0.5 1.5 conserved protein of unknown function compare
PP_0114 +0.5 2.2 methionine ABC transporter ATP-binding protein compare
PP_3757 +0.5 2.4 Chemotaxis protein CheY compare
PP_2074 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_5258 +0.5 2.3 L-piperidine-6-carboxylate dehydrogenase compare
PP_1867 +0.5 1.7 conserved protein of unknown function compare
PP_5029 +0.5 3.4 N-formylglutamate deformylase compare
PP_4780 +0.5 3.5 putative Acyl-CoA dehydrogenase compare
PP_4792 +0.5 0.9 conserved exported protein of unknown function compare
PP_0947 +0.5 1.9 conserved membrane protein of unknown function compare
PP_3136 +0.5 2.3 putative O-acetyltransferase compare
PP_4159 +0.5 1.8 Potassium-transporting ATPase C chain compare
PP_1512 +0.5 1.3 conserved protein of unknown function compare
PP_4626 +0.5 2.7 holin regulator of murein hydrolases compare
PP_2846 +0.5 2.1 urease accessory protein compare
PP_1716 +0.5 1.5 Transcriptional regulator, Cro/CI family compare
PP_3861 +0.5 1.4 Phage FluMu protein gp46 compare
PP_3743 +0.5 3.0 conserved exported protein of unknown function compare
PP_2406 +0.5 1.6 putative quinate/shikimate dehydrogenase compare
PP_1076 +0.5 2.0 aquaglyceroporin compare
PP_4504 +0.5 1.0 conserved exported protein of unknown function compare
PP_5090 +0.5 0.6 putative cell division protein compare
PP_0649 +0.5 2.2 MutT/nudix family protein compare
PP_4002 +0.5 2.5 DNA-dependent ATPase required for recombination compare
PP_5675 +0.5 1.3 conserved protein of unknown function compare
PP_1649 +0.5 1.6 D-lactate dehydrogenase compare
PP_3110 +0.5 1.1 protein of unknown function compare
PP_2684 +0.5 1.9 conserved membrane protein of unknown function compare
PP_3118 +0.5 2.3 DNA linked enzyme involved in DNA repair compare
PP_4929 +0.5 1.9 Transcriptional regulator, LysR family compare
PP_5247 +0.5 1.8 conserved protein of unknown function compare
PP_3476 +0.5 2.4 Type II secretion system protein G compare
PP_3746 +0.5 1.8 glycolate oxidase, putative FAD-binding subunit compare
PP_5648 +0.5 2.1 conserved exported protein of unknown function compare
PP_0806 +0.5 4.2 putative Surface adhesion protein compare
PP_0080 +0.5 1.9 conserved protein of unknown function compare
PP_2046 +0.5 1.4 Transcriptional regulator, LysR family compare
PP_3222 +0.5 2.3 ABC transporter, permease protein compare
PP_5070 +0.5 2.0 ParA family protein compare
PP_2900 +0.5 1.2 conserved protein of unknown function compare
PP_0090 +0.5 1.4 conserved exported protein of unknown function compare
PP_4629 +0.4 1.8 Sensory box protein compare
PP_2347 +0.4 1.8 DNA-binding response regulator compare
PP_0214 +0.4 2.0 4-aminobutyrate aminotransferase compare
PP_5093 +0.4 0.9 twitching motility protein compare
PP_3341 +0.4 1.4 nickel-responsive regulator compare
PP_1415 +0.4 1.4 putative membrane associated enzyme subunit compare
PP_0534 +0.4 2.5 putative Transcriptional regulator PfeR compare
PP_2880 +0.4 1.1 Transcriptional regulator, TetR family compare
PP_3284 +0.4 1.4 enoyl-CoA hydratase-isomerase compare
PP_2776 +0.4 2.1 Homocysteine S-methyltransferase family protein compare
PP_5504 +0.4 2.1 conserved protein of unknown function compare
PP_1822 +0.4 2.0 conserved protein of unknown function compare
PP_0319 +0.4 0.9 conserved protein of unknown function compare
PP_0240 +0.4 1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4697 +0.4 1.1 poly(A) polymerase compare
PP_0250 +0.4 1.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5135 +0.4 2.3 ABC transporter, periplasmic binding protein compare
PP_5681 +0.4 1.8 conserved protein of unknown function compare
PP_2658 +0.4 1.7 phosphate ABC transporter compare
PP_5023 +0.4 2.1 Amino acid ABC transporter, permease protein compare
PP_3014 +0.4 0.8 conserved exported protein of unknown function compare
PP_2927 +0.4 1.7 conserved protein of unknown function compare
PP_1534 +0.4 1.3 conserved protein of unknown function compare
PP_2497 +0.4 0.7 conserved protein of unknown function compare
PP_0274 +0.4 0.4 putative transcriptional regulator containing HTH domain compare
PP_4043 +0.4 2.1 putative 6-phosphogluconate dehydrogenase, decarboxylating compare
PP_1116 +0.4 1.8 Site-specific recombinase, resolvase family compare
PP_0805 +0.4 2.6 Outer membrane efflux protein compare
PP_0270 +0.4 2.5 Sensor histidine kinase compare
PP_1906 +0.4 1.2 ribosomal large subunit pseudouridine synthase C compare
PP_3051 +0.4 1.2 Pyocin R2_PP, tail spike protein compare
PP_5338 +0.4 0.8 aspartate ammonia-lyase compare
PP_5481 +0.4 2.0 conserved protein of unknown function compare
PP_5127 +0.4 2.0 ribosomal RNA large subunit methyltransferase I compare
PP_5253 +0.4 0.7 Arylesterase compare
PP_1560 +0.4 1.9 conserved protein of unknown function compare
PP_1357 +0.4 2.4 conserved protein of unknown function compare
PP_1909 +0.4 1.3 putative septum formation protein compare
PP_0850 +0.4 2.0 Dual-specificity RNA methyltransferase RlmN compare
PP_2173 +0.4 1.6 Transcriptional regulator, AraC family compare
PP_0972 +0.4 1.4 UPF0213 protein PP_0972 compare
PP_2078 +0.4 1.0 transcriptional activator protein LysR compare
PP_1114 +0.4 1.9 SEC-C domain protein compare
PP_0827 +0.4 1.5 putative phosphonate transport system permease protein PtxC compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Trinitrotoluene across organisms