Experiment set55S344 for Pseudomonas putida KT2440

Compare to:

TNT nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.1 -7.2 Indole-3-glycerol phosphate synthase compare
PP_0293 -5.5 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4679 -5.4 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -5.4 -13.4 3-isopropylmalate dehydrogenase compare
PP_3511 -5.4 -12.5 Branched-chain-amino-acid aminotransferase compare
PP_4678 -5.3 -20.7 Ketol-acid reductoisomerase compare
PP_5014 -5.1 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -5.0 -14.7 Histidinol dehydrogenase compare
PP_4680 -4.9 -20.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1384 -4.9 -8.5 Probable efflux pump outer membrane protein TtgC compare
PP_5289 -4.7 -6.4 Acetylglutamate kinase compare
PP_1088 -4.7 -12.5 Argininosuccinate synthase compare
PP_1986 -4.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_5097 -4.6 -18.2 homoserine O-acetyltransferase compare
PP_0290 -4.5 -10.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -4.4 -8.2 3-isopropylmalate dehydratase large subunit compare
PP_5185 -4.2 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -4.1 -5.5 tryptophan synthase beta chain compare
PP_1079 -4.1 -7.4 Ornithine carbamoyltransferase compare
PP_4890 -4.1 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -4.0 -17.7 Anthranilate synthase component 1 compare
PP_0184 -3.9 -6.5 Argininosuccinate lyase compare
PP_0289 -3.9 -6.6 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -3.9 -13.9 Transaldolase compare
PP_4937 -3.9 -3.7 toluene tolerance protein compare
PP_1995 -3.8 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -3.8 -12.5 methionine biosynthesis protein MetW compare
PP_0967 -3.8 -13.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -3.8 -5.1 tryptophan synthase alpha chain compare
PP_2371 -3.7 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0965 -3.7 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -3.7 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2001 -3.7 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_5128 -3.6 -7.2 Dihydroxy-acid dehydratase compare
PP_0291 -3.5 -5.1 conserved protein of unknown function compare
PP_4909 -3.5 -8.8 phosphoserine phosphatase compare
PP_5095 -3.5 -2.3 pyrroline-5-carboxylate reductase compare
PP_5155 -3.4 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -3.3 -4.5 Nitrogen regulation protein NR(I) compare
PP_0787 -3.3 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -3.3 -8.5 Anthranilate phosphoribosyltransferase compare
PP_1025 -3.0 -8.8 2-isopropylmalate synthase compare
PP_1231 -3.0 -7.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4723 -3.0 -5.4 Carbamoyl-phosphate synthase large chain compare
PP_5347 -2.9 -15.0 pyruvate carboxylase subunit A compare
PP_5346 -2.6 -12.4 pyruvate carboxylase subunit B compare
PP_2327 -2.5 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4724 -2.5 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_0691 -2.5 -3.2 Glutamate 5-kinase compare
PP_5015 -2.4 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1386 -2.4 -7.0 Probable efflux pump periplasmic linker TtgA conserved
PP_3999 -2.4 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1385 -2.3 -11.8 Probable efflux pump membrane transporter TtgB compare
PP_0345 -2.2 -4.3 putative Heptose kinase WapP compare
PP_0735 -2.1 -3.7 molybdopterin-synthase adenylyltransferase compare
PP_0960 -2.1 -6.6 phospholipid ABC transporter binding protein compare
PP_5348 -2.0 -10.1 Transcriptional regulator, LysR family compare
PP_0962 -2.0 -3.7 toluene-tolerance protein compare
PP_0127 -2.0 -5.7 Thiol:disulfide interchange protein compare
PP_5303 -1.9 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0961 -1.9 -6.2 toluene tolerance protein compare
PP_1664 -1.9 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_2429 -1.8 -2.8 putative Membrane protein compare
PP_1428 -1.8 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_2328 -1.8 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_1233 -1.8 -6.9 sulfurtransferase compare
PP_0339 -1.7 -2.6 Pyruvate dehydrogenase E1 component compare
PP_0959 -1.7 -3.0 phospholipid ABC transporter compare
PP_4782 -1.7 -4.5 Phosphomethylpyrimidine kinase compare
PP_0420 -1.7 -5.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0809 -1.6 -8.6 disulfide bond formation protein B compare
PP_4268 -1.6 -1.2 nucleoid-associated broad specificity regulator compare
PP_2354 -1.6 -9.5 Sensory box histidine kinase/response regulator compare
PP_1826 -1.5 -3.2 Hydrolase, isochorismatase family compare
PP_2370 -1.5 -2.1 conserved protein of unknown function compare
PP_1348 -1.5 -6.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2163 -1.5 -5.3 VacJ lipoprotein compare
PP_5114 -1.4 -2.3 putative adenine methyltransferase compare
PP_3417 -1.4 -5.1 D-gluconate transporter compare
PP_5350 -1.4 -2.6 Transcriptional regulator, RpiR family compare
PP_0958 -1.4 -5.1 phospholipid ABC transporter ATP-binding subunit compare
PP_4136 -1.4 -1.8 Transcriptional regulator, LuxR family compare
PP_2356 -1.4 -8.0 putative Phytochrome family protein compare
PP_0346 -1.4 -8.2 putative Heptose kinase WapQ compare
PP_5104 -1.4 -5.0 thiazole synthase compare
PP_5331 -1.3 -5.1 Long-chain acyl-CoA thioester hydrolase compare
PP_2475 -1.3 -4.2 Transcriptional regulator, TetR family compare
PP_1808 -1.3 -3.3 glucose-6-phosphate isomerase compare
PP_0001 -1.3 -1.6 probable chromosome-partitioning protein compare
PP_1232 -1.3 -6.1 conserved exported protein of unknown function compare
PP_3726 -1.3 -2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4922 -1.2 -8.9 Phosphomethylpyrimidine synthase compare
PP_1362 -1.2 -2.6 pyruvate kinase II compare
PP_2088 -1.1 -3.4 RNA polymerase sigma factor SigX compare
PP_4471 -1.1 -4.1 Magnesium transporter compare
PP_5393 -1.1 -1.6 putative metal-binding chaperone compare
PP_3876 -1.1 -2.4 conserved protein of unknown function compare
PP_1041 -1.1 -2.4 twin arginine protein export complex subunit compare
PP_4054 -1.1 -1.5 conserved protein of unknown function compare
PP_0377 -1.1 -1.4 coenzyme PQQ synthesis protein D compare
PP_5227 -1.0 -5.1 diaminopimelate decarboxylase compare
PP_0435 -1.0 -7.9 Peptidase, M23/M37 family compare
PP_3336 -1.0 -4.7 conserved protein of unknown function compare
PP_4262 -1.0 -3.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3930 -1.0 -1.8 conserved exported protein of unknown function compare
PP_3506 -1.0 -2.0 Magnesium chelatase, subunit ChII compare
PP_2348 -1.0 -4.7 Sensor histidine kinase compare
PP_1022 -1.0 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2976 -1.0 -1.4 putative transposase compare
PP_3037 -1.0 -2.8 C4-type zinc finger protein, DksA/TraR family compare
PP_0834 -1.0 -0.9 Sec translocation complex subunit YajC compare
PP_1941 -1.0 -3.5 conserved protein of unknown function compare
PP_0378 -1.0 -5.3 Pyrroloquinoline-quinone synthase compare
PP_2306 -0.9 -1.9 conserved exported protein of unknown function compare
PP_2681 -0.9 -1.3 coenzyme PQQ synthesis protein D compare
PP_5495 -0.9 -1.2 protein of unknown function compare
PP_0381 -0.9 -5.3 Coenzyme PQQ synthesis protein F compare
PP_2378 -0.9 -2.0 Fe/S biogenesis protein NfuA compare
PP_0913 -0.9 -3.7 conserved exported protein of unknown function compare
PP_5652 -0.9 -1.1 conserved protein of unknown function, phage origin compare
PP_0949 -0.9 -4.9 putative ATP-binding protein UPF0042 compare
PP_5052 -0.9 -2.3 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0063 -0.9 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1328 -0.9 -2.4 Protein MraZ compare
PP_2341 -0.9 -1.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5267 -0.9 -3.0 putative cytochrome c5 compare
PP_4726 -0.9 -1.6 Chaperone protein DnaJ compare
PP_2118 -0.9 -2.4 conserved protein of unknown function compare
PP_1207 -0.9 -2.6 conserved protein of unknown function compare
PP_2136 -0.9 -2.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0513 -0.9 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1366 -0.9 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1214 -0.9 -1.5 putative transcriptional regulatory protein compare
PP_1303 -0.9 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_1691 -0.9 -2.7 conserved protein of unknown function compare
PP_2520 -0.9 -2.0 conserved protein of unknown function compare
PP_0833 -0.9 -0.9 queuine tRNA-ribosyltransferase compare
PP_3359 -0.8 -1.7 putative Hydroxycinnamic acid degradation regulator compare
PP_4150 -0.8 -3.8 microcin C transporter - ATP binding subunit compare
PP_5473 -0.8 -2.6 putative transcriptional regulator, LuxR family compare
PP_4532 -0.8 -1.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4148 -0.8 -4.9 putative inner membrane ABC transporter permease protein compare
PP_1374 -0.8 -4.6 conserved protein of unknown function compare
PP_1034 -0.8 -4.7 multicopper oxidase compare
PP_1493 -0.8 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1304 -0.8 -5.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2375 -0.8 -5.5 cobalamin-dependent methionine synthase compare
PP_2000 -0.8 -0.5 amidophosphoribosyl transferase compare
PP_1678 -0.8 -3.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4271 -0.8 -0.7 conserved protein of unknown function compare
PP_2414 -0.8 -0.9 conserved exported protein of unknown function compare
PP_1439 -0.8 -1.1 conserved exported protein of unknown function compare
PP_4263 -0.8 -2.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4826 -0.8 -3.4 Precorrin-3B C17-methyltransferase compare
PP_2144 -0.8 -2.3 Transcriptional regulator, TetR family compare
PP_5380 -0.8 -6.7 copper resistance protein A compare
PP_4943 -0.8 -0.8 putative Glycosyl transferase compare
PP_1676 -0.8 -2.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3243 -0.8 -1.9 Acetyltransferase, GNAT family compare
PP_0376 -0.8 -4.6 Coenzyme PQQ synthesis protein E compare
PP_4804 -0.8 -1.3 RlpA-like lipoprotein compare
PP_0048 -0.8 -1.3 conserved protein of unknown function compare
PP_4273 -0.8 -2.3 Transcriptional regulator, MerR family compare
PP_5035 -0.8 -3.3 Histidine utilization repressor compare
PP_5328 -0.8 -2.0 putative phosphate transport system permease protein compare
PP_3819 -0.8 -3.8 glutathione reductase (NADPH) compare
PP_4830 -0.8 -2.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_1444 -0.8 -4.8 quinoprotein glucose dehydrogenase compare
PP_4133 -0.8 -2.3 Transcriptional regulator-related protein compare
PP_1731 -0.8 -2.3 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_0380 -0.8 -4.0 Coenzyme PQQ synthesis protein A compare
PP_3409 -0.7 -1.6 putative Cobalamin biosynthesis protein cobE compare
PP_4099 -0.7 -6.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5705 -0.7 -1.3 protein of unknown function compare
PP_3286 -0.7 -3.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1598 -0.7 -2.6 regulatory intramembrane protein RIP zinc protease compare
PP_0276 -0.7 -1.2 Transcriptional regulator, Cro/CI family compare
PP_0775 -0.7 -1.4 conserved protein of unknown function compare
PP_3475 -0.7 -3.4 putative type II secretory pathway, pseudopilin pulG-related signal peptide protein compare
PP_t12 -0.7 -0.5 tRNA-Thr compare
PP_2107 -0.7 -1.0 conserved protein of unknown function compare
PP_4997 -0.7 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3312 -0.7 -1.8 putative Heat shock protein compare
PP_4199 -0.7 -0.7 putative Lipoprotein compare
PP_4555 -0.7 -1.9 conserved protein of unknown function compare
PP_1681 -0.7 -4.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1656 -0.7 -3.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1677 -0.7 -3.1 Adenosyl-cobyric acid synthase compare
PP_1008 -0.7 -1.3 RNA polymerase subunit sigma-24 compare
PP_2700 -0.7 -1.6 AhpC/TSA family protein compare
PP_0909 -0.7 -3.4 conserved exported protein of unknown function compare
PP_0984 -0.7 -2.3 conserved membrane protein of unknown function compare
PP_5329 -0.7 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1672 -0.7 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3508 -0.7 -1.9 Protein CobW compare
PP_3989 -0.7 -3.1 DNA-cytosine methyltransferase compare
PP_1390 -0.7 -1.6 conserved exported protein of unknown function compare
PP_3505 -0.7 -1.1 conserved protein of unknown function compare
PP_0362 -0.7 -4.2 Biotin synthase compare
PP_3258 -0.7 -1.6 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Trinitrotoluene in Pseudomonas putida KT2440

For nitrogen source Trinitrotoluene across organisms