Experiment set55S342 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride and TNT nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.9 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4099 -5.9 -43.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1986 -5.9 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0345 -5.6 -7.6 putative Heptose kinase WapP compare
PP_0967 -5.6 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -5.6 -20.3 Ketol-acid reductoisomerase compare
PP_1650 -5.5 -28.1 Sensor protein GacS compare
PP_3511 -5.4 -12.0 Branched-chain-amino-acid aminotransferase compare
PP_1988 -5.4 -11.9 3-isopropylmalate dehydrogenase compare
PP_4679 -4.9 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -4.9 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -4.9 -12.1 methionine biosynthesis protein MetW compare
PP_5347 -4.8 -15.1 pyruvate carboxylase subunit A compare
PP_5097 -4.8 -18.4 homoserine O-acetyltransferase compare
PP_0966 -4.8 -11.4 Histidinol dehydrogenase compare
PP_0422 -4.7 -8.2 Indole-3-glycerol phosphate synthase compare
PP_2168 -4.7 -12.5 Transaldolase compare
PP_1385 -4.6 -19.8 Probable efflux pump membrane transporter TtgB compare
PP_1384 -4.5 -9.5 Probable efflux pump outer membrane protein TtgC compare
PP_1985 -4.4 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_0959 -4.4 -3.0 phospholipid ABC transporter compare
PP_1088 -4.4 -13.8 Argininosuccinate synthase compare
PP_0184 -4.3 -5.1 Argininosuccinate lyase compare
PP_0127 -4.3 -7.6 Thiol:disulfide interchange protein compare
PP_0417 -4.2 -19.7 Anthranilate synthase component 1 compare
PP_4937 -4.2 -2.9 toluene tolerance protein compare
PP_4680 -4.2 -15.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1386 -4.1 -9.5 Probable efflux pump periplasmic linker TtgA compare
PP_4909 -4.1 -7.9 phosphoserine phosphatase compare
PP_0965 -4.1 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -4.0 -5.5 tryptophan synthase beta chain compare
PP_0082 -4.0 -4.7 tryptophan synthase alpha chain compare
PP_0961 -4.0 -7.1 toluene tolerance protein compare
PP_5015 -3.9 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5346 -3.9 -14.4 pyruvate carboxylase subunit B compare
PP_0289 -3.9 -8.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0809 -3.9 -12.6 disulfide bond formation protein B compare
PP_5128 -3.9 -8.6 Dihydroxy-acid dehydratase compare
PP_0691 -3.9 -2.7 Glutamate 5-kinase compare
PP_5014 -3.8 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_1079 -3.8 -6.3 Ornithine carbamoyltransferase compare
PP_2370 -3.7 -3.6 conserved protein of unknown function compare
PP_2371 -3.7 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5185 -3.7 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1232 -3.7 -10.0 conserved exported protein of unknown function compare
PP_2001 -3.6 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_0421 -3.6 -9.6 Anthranilate phosphoribosyltransferase compare
PP_0346 -3.6 -11.7 putative Heptose kinase WapQ compare
PP_5095 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_4890 -3.5 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5348 -3.4 -12.1 Transcriptional regulator, LysR family compare
PP_5155 -3.4 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2163 -3.3 -8.3 VacJ lipoprotein compare
PP_t12 -3.3 -1.2 tRNA-Thr compare
PP_4723 -3.3 -3.2 Carbamoyl-phosphate synthase large chain compare
PP_1231 -3.2 -8.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0291 -3.1 -3.2 conserved protein of unknown function compare
PP_0962 -3.1 -4.1 toluene-tolerance protein compare
PP_0960 -3.1 -6.3 phospholipid ABC transporter binding protein compare
PP_4696 -3.0 -5.3 Nitrogen regulation protein NR(I) compare
PP_2327 -3.0 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5289 -3.0 -3.5 Acetylglutamate kinase compare
PP_0292 -3.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -2.8 -6.3 Phosphoadenosine phosphosulfate reductase compare
PP_2475 -2.7 -4.1 Transcriptional regulator, TetR family compare
PP_0290 -2.6 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1025 -2.6 -9.1 2-isopropylmalate synthase compare
PP_5303 -2.5 -7.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4724 -2.5 -3.3 Carbamoyl-phosphate synthase small chain compare
PP_0787 -2.5 -5.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3819 -2.4 -8.8 glutathione reductase (NADPH) compare
PP_5217 -2.4 -20.2 Polyphosphate kinase compare
PP_3999 -2.4 -6.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0980 -2.3 -8.5 Probable cytosol aminopeptidase compare
PP_0958 -2.3 -4.3 phospholipid ABC transporter ATP-binding subunit compare
PP_0368 -2.2 -12.3 putative Acyl-CoA dehydrogenase compare
PP_2136 -2.1 -5.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5055 -2.1 -2.9 Sulfurtransferase compare
PP_1623 -2.1 -10.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_5104 -2.0 -8.7 thiazole synthase compare
PP_3417 -2.0 -6.8 D-gluconate transporter compare
PP_2378 -2.0 -3.3 Fe/S biogenesis protein NfuA compare
PP_5114 -2.0 -2.6 putative adenine methyltransferase compare
PP_0435 -2.0 -13.1 Peptidase, M23/M37 family compare
PP_1941 -1.9 -8.0 conserved protein of unknown function compare
PP_0735 -1.9 -3.6 molybdopterin-synthase adenylyltransferase compare
PP_1655 -1.9 -5.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1233 -1.9 -4.0 sulfurtransferase compare
PP_0339 -1.9 -2.8 Pyruvate dehydrogenase E1 component compare
PP_4782 -1.9 -4.7 Phosphomethylpyrimidine kinase compare
PP_1898 -1.9 -2.9 MotA/TolQ/ExbB proton channel family protein compare
PP_3474 -1.8 -3.0 putative Curli fiber protein CsgE compare
PP_1362 -1.8 -3.9 pyruvate kinase II compare
PP_1142 -1.7 -1.1 conserved protein of unknown function compare
PP_0794 -1.7 -5.6 1-phosphofructokinase monomer compare
PP_0795 -1.7 -8.4 fructose PTS permease - IIBC component compare
PP_0378 -1.7 -7.6 Pyrroloquinoline-quinone synthase compare
PP_2299 -1.7 -4.6 Trigger factor compare
PP_0376 -1.7 -10.3 Coenzyme PQQ synthesis protein E compare
PP_0377 -1.7 -3.1 coenzyme PQQ synthesis protein D compare
PP_5075 -1.6 -9.8 glutamate synthase (NADPH) beta subunit compare
PP_1444 -1.6 -8.5 quinoprotein glucose dehydrogenase compare
PP_3726 -1.6 -3.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_5329 -1.6 -6.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1656 -1.5 -6.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_0380 -1.5 -6.6 Coenzyme PQQ synthesis protein A compare
PP_4532 -1.5 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0001 -1.5 -1.4 probable chromosome-partitioning protein compare
PP_0793 -1.5 -7.8 Phosphotransferase system, fructose-specific EI/HPr/EIIA components compare
PP_1110 -1.5 -4.6 serine acetyltransferase compare
PP_2356 -1.5 -8.2 putative Phytochrome family protein compare
PP_1826 -1.5 -3.1 Hydrolase, isochorismatase family compare
PP_4993 -1.4 -2.9 Glutathione synthetase compare
PP_5076 -1.4 -11.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_0420 -1.4 -4.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0007 -1.4 -3.0 conserved hypothetical protein compare
PP_2348 -1.4 -4.8 Sensor histidine kinase compare
PP_4994 -1.4 -4.1 conserved protein of unknown function compare
PP_4726 -1.4 -2.2 Chaperone protein DnaJ compare
PP_1348 -1.4 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0379 -1.4 -6.9 Coenzyme PQQ synthesis protein B compare
PP_1328 -1.4 -3.2 Protein MraZ compare
PP_4922 -1.4 -9.0 Phosphomethylpyrimidine synthase compare
PP_0003 -1.3 -3.2 16S RNA methyltransferase compare
PP_0949 -1.3 -6.3 putative ATP-binding protein UPF0042 compare
PP_4268 -1.3 -1.2 nucleoid-associated broad specificity regulator compare
PP_5035 -1.3 -4.3 Histidine utilization repressor compare
PP_3821 -1.3 -6.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1664 -1.3 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_2429 -1.3 -1.9 putative Membrane protein compare
PP_4199 -1.3 -1.1 putative Lipoprotein compare
PP_1468 -1.3 -1.6 Tyrosine recombinase XerD compare
PP_2354 -1.3 -6.9 Sensory box histidine kinase/response regulator compare
PP_0195 -1.3 -3.0 conserved protein of unknown function compare
PP_1109 -1.2 -9.7 Transcriptional regulator, GntR family compare
PP_1303 -1.2 -5.0 Sulfate adenylyltransferase subunit 2 compare
PP_0063 -1.2 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0913 -1.2 -5.5 conserved exported protein of unknown function compare
PP_0381 -1.2 -6.7 Coenzyme PQQ synthesis protein F compare
PP_5146 -1.2 -5.8 RNA pyrophosphohydrolase compare
PP_4271 -1.2 -0.9 conserved protein of unknown function compare
PP_5475 -1.2 -2.1 conserved protein of unknown function compare
PP_4938 -1.2 -5.9 putative Glycosyl transferase compare
PP_1111 -1.2 -5.3 putative Synthetase compare
PP_2976 -1.2 -1.6 putative transposase compare
PP_1460 -1.2 -7.1 putative Membrane protein compare
PP_1304 -1.1 -6.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5054 -1.1 -2.8 glutaredoxin 3 compare
PP_3286 -1.1 -4.6 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0586 -1.1 -6.3 cadmium translocating P-type ATPase compare
PP_4785 -1.1 -5.5 conserved exported protein of unknown function compare
PP_5216 -1.1 -2.3 exopolyphosphatase compare
PP_4148 -1.1 -6.4 putative inner membrane ABC transporter permease protein compare
PP_2433 -1.1 -2.6 conserved protein of unknown function compare
PP_0834 -1.1 -1.4 Sec translocation complex subunit YajC compare
PP_0048 -1.1 -1.7 conserved protein of unknown function compare
PP_5583 -1.1 -2.2 conserved protein of unknown function compare
PP_1206 -1.1 -5.1 basic-amino-acid specific porin OprD compare
PP_1215 -1.1 -0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1999 -1.1 -1.4 membrane protein required for colicin V production compare
PP_5350 -1.1 -2.2 Transcriptional regulator, RpiR family compare
PP_4150 -1.1 -3.7 microcin C transporter - ATP binding subunit compare
PP_4471 -1.1 -4.0 Magnesium transporter compare
PP_0540 -1.1 -5.5 conserved inner membrane protein compare
PP_4262 -1.1 -2.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4695 -1.1 -5.8 Sensory box histidine kinase compare
PP_1788 -1.0 -1.6 conserved protein of unknown function compare
PP_5380 -1.0 -8.6 copper resistance protein A compare
PP_3508 -1.0 -2.4 Protein CobW compare
PP_3539 -1.0 -1.9 putative Transcriptional regulator compare
PP_2132 -1.0 -4.0 Universal stress protein compare
PP_5529 -1.0 -2.3 putative epimerase compare
PP_1309 -1.0 -4.6 conserved exported protein of unknown function compare
PP_1034 -1.0 -5.5 multicopper oxidase compare
PP_5495 -1.0 -1.7 protein of unknown function compare
PP_3773 -1.0 -2.6 conserved protein of unknown function compare
PP_3892 -1.0 -1.1 conserved protein of unknown function compare
PP_0340 -1.0 -6.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2088 -1.0 -2.3 RNA polymerase sigma factor SigX compare
PP_4570 -1.0 -6.8 conserved protein of unknown function compare
PP_2137 -1.0 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_1238 -1.0 -4.6 putative Lipoprotein compare
PP_5331 -1.0 -3.0 Long-chain acyl-CoA thioester hydrolase compare
PP_4504 -0.9 -1.4 conserved exported protein of unknown function compare
PP_1645 -0.9 -3.2 putative enzyme compare
PP_1099 -0.9 -2.1 Cold shock protein CapB compare
PP_5052 -0.9 -2.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0674 -0.9 -5.5 ADP/ATP ratio sensor and inhibitor of translation compare
PP_5039 -0.9 -1.6 conserved protein of unknown function compare
PP_0362 -0.9 -6.1 Biotin synthase compare
PP_0948 -0.9 -2.4 Phosphocarrier protein HPr compare
PP_2622 -0.9 -4.0 conserved protein of unknown function compare
PP_4149 -0.9 -5.8 putative inner membrane ABC transporter permease protein compare
PP_1208 -0.9 -1.4 conserved protein of unknown function, SlyX family compare
PP_0910 -0.9 -4.5 conserved exported protein of unknown function compare
PP_5456 -0.9 -1.9 conserved protein of unknown function compare
PP_4804 -0.9 -1.2 RlpA-like lipoprotein compare
PP_2217 -0.9 -2.0 enoyl-CoA hydratase compare
PP_3989 -0.9 -3.1 DNA-cytosine methyltransferase compare
PP_4814 -0.9 -1.7 ATP-dependent protease La domain protein compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source Ammonium chloride in Pseudomonas putida KT2440

For nitrogen source Ammonium chloride across organisms