Experiment set55S342 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride and TNT nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_3415 +1.7 9.0 Transcriptional regulator, LacI family compare
PP_3519 +1.6 1.4 putative Lipoprotein compare
PP_1445 +1.5 5.6 carbohydrate-selective porin compare
PP_4373 +1.4 10.2 Transcriptional regulator FleQ compare
PP_3903 +1.3 2.0 conserved protein of unknown function compare
PP_0165 +1.3 10.7 GGDEF domain protein compare
PP_4519 +1.3 10.6 Agglutination protein compare
PP_1164 +1.3 3.1 Transcriptional regulator, LysR family compare
PP_3614 +1.3 2.9 conserved membrane protein of unknown function compare
PP_0167 +1.2 10.4 Toxin secretion ATP-binding protein compare
PP_0168 +1.2 10.9 putative surface adhesion protein compare
PP_0166 +1.2 9.4 HlyD family secretion protein compare
PP_3052 +1.1 1.5 conserved protein of unknown function compare
PP_2196 +1.1 2.3 agmatinase compare
PP_1020 +1.1 2.8 putative glucose-6-phosphate 1-epimerase compare
PP_4162 +1.1 3.4 conserved membrane protein of unknown function compare
PP_3938 +1.0 1.7 conserved protein of unknown function compare
PP_3241 +0.9 1.0 conserved exported protein of unknown function compare
PP_2152 +0.9 2.2 glycerophosphoryl diester phosphodiesterase compare
PP_2256 +0.9 2.4 Transcriptional regulator, Cro/CI family compare
PP_4015 +0.9 4.6 HflD-like high frequency lysogenization protein compare
PP_5022 +0.9 1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_1824 +0.9 1.0 Smr domain protein compare
PP_2417 +0.9 2.0 putative Iron ABC transporter, permease protein compare
PP_0643 +0.9 1.4 protein of unknown function compare
PP_0214 +0.8 3.6 4-aminobutyrate aminotransferase compare
PP_0760 +0.8 2.4 conserved membrane protein of unknown function compare
PP_2028 +0.8 1.6 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_4067 +0.8 3.7 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2379 +0.8 4.1 putative cytochrome oxidase biogenesis protein compare
PP_2776 +0.8 2.7 Homocysteine S-methyltransferase family protein compare
PP_5029 +0.8 5.5 N-formylglutamate deformylase compare
PP_5248 +0.8 0.8 putative hydrolase compare
PP_3365 +0.7 1.0 Acetolactate synthase compare
PP_0846 +0.7 0.8 DnaK-like molecular chaperone specific for IscU compare
PP_3000 +0.7 1.9 MaoC domain protein compare
PP_4479 +0.7 3.5 arginine N-succinyltransferase, subunit beta compare
PP_5337 +0.7 2.7 LysR family transcriptional regulator compare
PP_3378 +0.7 1.8 putative 2-ketogluconokinase compare
PP_1322 +0.7 0.8 putative Lipoprotein compare
PP_2025 +0.7 1.8 Exonuclease SbcD compare
PP_4913 +0.7 2.7 conserved protein of unknown function compare
PP_3021 +0.7 3.1 Transporter, LysE family compare
PP_1609 +0.7 1.3 conserved protein of unknown function compare
PP_0792 +0.7 3.5 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_5017 +0.7 0.6 Sec-independent protein translocase protein TatB compare
PP_0250 +0.7 1.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_2031 +0.7 0.8 conserved protein of unknown function compare
PP_3730 +0.7 1.3 Transcriptional regulatory protein AruR compare
PP_3013 +0.7 2.4 conserved protein of unknown function compare
PP_0989 +0.7 2.4 glycine cleavage system H protein 1 compare
PP_3888 +0.7 3.0 conserved protein of unknown function compare
PP_5571 +0.7 1.2 conserved protein of unknown function compare
PP_4223 +0.7 1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2668 +0.7 1.3 ABC efflux transporter, ATP-binding protein compare
PP_2309 +0.7 1.2 conserved protein of unknown function compare
PP_1774 +0.7 1.5 conserved exported protein of unknown function compare
PP_4143 +0.7 2.0 conserved protein of unknown function compare
PP_2747 +0.7 1.6 conserved protein of unknown function compare
PP_2406 +0.7 1.8 putative quinate/shikimate dehydrogenase compare
PP_5667 +0.7 1.9 putative microcin B17-like-processing protein, McbC family compare
PP_2646 +0.7 2.6 conserved protein of unknown function compare
PP_4065 +0.6 3.9 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4701 +0.6 0.9 glucose-6-phosphate isomerase compare
PP_4738 +0.6 1.4 conserved exported protein of unknown function compare
PP_0352 +0.6 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1476 +0.6 2.1 conserved protein of unknown function compare
PP_0355 +0.6 2.5 Response regulator compare
PP_4483 +0.6 3.8 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_1512 +0.6 2.2 conserved protein of unknown function compare
PP_0945 +0.6 2.5 conserved protein of unknown function compare
PP_1906 +0.6 2.0 ribosomal large subunit pseudouridine synthase C compare
PP_3197 +0.6 2.0 Glyoxalase family protein compare
PP_5426 +0.6 3.5 conserved protein of unknown function compare
PP_1702 +0.6 1.8 Recombination-associated protein RdgC compare
PP_1716 +0.6 1.2 Transcriptional regulator, Cro/CI family compare
PP_0274 +0.6 0.7 putative transcriptional regulator containing HTH domain compare
PP_2504 +0.6 2.0 putative tautomerase K2 compare
PP_3864 +0.6 1.8 putative Phage FluMu DNA circulation protein compare
PP_0125 +0.6 2.2 putative cytochrome c-type protein compare
PP_2203 +0.6 1.4 conserved protein of unknown function compare
PP_1482 +0.6 3.1 polyamine ABC transporter, permease protein compare
PP_5609 +0.6 1.4 conserved protein of unknown function compare
PP_3110 +0.6 1.3 protein of unknown function compare
PP_5070 +0.6 3.5 ParA family protein compare
PP_4475 +0.6 3.2 succinylglutamate desuccinylase compare
PP_0553 +0.6 2.2 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_3333 +0.6 1.3 conserved protein of unknown function compare
PP_2160 +0.6 1.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1204 +0.6 2.2 putative Lipoprotein compare
PP_5023 +0.6 2.9 Amino acid ABC transporter, permease protein compare
PP_4215 +0.6 2.3 pyoverdine biosynthesis related protein compare
PP_4619 +0.6 2.9 Maleylacetoacetate isomerase compare
PP_3353 +0.6 2.4 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_3089 +0.6 2.2 conserved protein of unknown function compare
PP_3222 +0.6 3.5 ABC transporter, permease protein compare
PP_2497 +0.6 1.2 conserved protein of unknown function compare
PP_5582 +0.6 1.3 conserved protein of unknown function compare
PP_4734 +0.6 3.1 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_2581 +0.6 1.3 conserved protein of unknown function compare
PP_4569 +0.5 1.2 conserved protein of unknown function compare
PP_4066 +0.5 1.7 methylglutaconyl-CoA hydratase compare
PP_4838 +0.5 4.1 Outer membrane copper receptor OprC compare
PP_2432 +0.5 3.2 6,7-dihydropteridine reductase compare
PP_1230 +0.5 3.1 conserved exported protein of unknown function compare
PP_2257 +0.5 3.1 putative aerotaxis receptor compare
PP_5032 +0.5 2.3 Histidine ammonia-lyase compare
PP_3471 +0.5 1.3 conserved protein of unknown function compare
PP_3118 +0.5 2.5 DNA linked enzyme involved in DNA repair compare
PP_0488 +0.5 3.2 putative NADP-dependent dehydrogenase HI_1430 compare
PP_3362 +0.5 1.5 Transcriptional regulator, AsnC family compare
PP_1560 +0.5 2.1 conserved protein of unknown function compare
PP_1358 +0.5 2.6 putative heme iron utilization protein compare
PP_1870 +0.5 2.8 putative thiopurine S-methyltransferase compare
PP_5247 +0.5 1.9 conserved protein of unknown function compare
PP_3810 +0.5 1.0 conserved protein of unknown function compare
PP_0508 +0.5 1.4 conserved exported protein of unknown function compare
PP_0305 +0.5 1.6 HTH-type transcriptional regulator CdhR compare
PP_3480 +0.5 1.4 conserved protein of unknown function compare
PP_4720 +0.5 1.8 putative RNA binding protein compare
PP_2572 +0.5 1.8 conserved protein of unknown function compare
PP_0850 +0.5 2.4 Dual-specificity RNA methyltransferase RlmN compare
PP_1632 +0.5 0.7 conserved protein of unknown function compare
PP_1253 +0.5 2.1 Transcriptional regulator, ArsR family compare
PP_1867 +0.5 1.9 conserved protein of unknown function compare
PP_0550 +0.5 2.2 conserved protein of unknown function compare
PP_1211 +0.5 2.0 conserved protein of unknown function compare
PP_2032 +0.5 1.9 putative ATPase compare
PP_5481 +0.5 2.4 conserved protein of unknown function compare
PP_0806 +0.5 4.6 putative Surface adhesion protein compare
PP_2715 +0.5 1.5 ArsH protein compare
PP_4621 +0.5 3.2 Homogentisate 1,2-dioxygenase compare
PP_1534 +0.5 1.8 conserved protein of unknown function compare
PP_5272 +0.5 1.7 conserved protein of unknown function compare
PP_2658 +0.5 1.7 phosphate ABC transporter compare
PP_1439 +0.5 0.7 conserved exported protein of unknown function compare
PP_4943 +0.5 0.7 putative Glycosyl transferase compare
PP_2854 +0.5 1.6 conserved exported protein of unknown function compare
PP_5038 +0.5 1.8 conserved lipoprotein of unknown function compare
PP_4094 +0.5 1.7 conserved protein of unknown function compare
PP_3350 +0.5 2.7 conserved exported protein of unknown function compare
PP_2633 +0.5 0.9 conserved protein of unknown function compare
PP_3589 +0.5 2.9 serine:H+ symport permease, threonine-insensitive compare
PP_3411 +0.5 0.8 conserved protein of unknown function compare
PP_2245 +0.5 2.5 Transcriptional regulator, Cro/CI family compare
PP_5572 +0.5 1.5 protein of unknown function compare
PP_3942 +0.5 1.5 maleate isomerase compare
PP_5504 +0.5 2.6 conserved protein of unknown function compare
PP_3002 +0.5 1.4 shikimate dehydrogenase-related enzyme compare
PP_4929 +0.5 1.4 Transcriptional regulator, LysR family compare
PP_1633 +0.5 1.4 conserved exported protein of unknown function compare
PP_2857 +0.5 1.1 conserved exported protein of unknown function compare
PP_4629 +0.5 1.9 Sensory box protein compare
PP_2851 +0.5 3.1 conserved protein of unknown function compare
PP_0805 +0.5 2.8 Outer membrane efflux protein compare
PP_2925 +0.5 2.2 malate:quinone oxidoreductase compare
PP_4846 +0.5 1.8 L-amino acid N-acyltransferase compare
PP_0947 +0.5 1.9 conserved membrane protein of unknown function compare
PP_5701 +0.5 1.1 conserved protein of unknown function compare
PP_1692 +0.5 1.6 conserved protein of unknown function compare
PP_4212 +0.5 1.6 pyoverdine biosynthesis related protein compare
PP_1275 +0.5 1.9 conserved protein of unknown function compare
PP_2840 +0.5 1.6 putative Membrane protein compare
PP_0354 +0.5 3.5 CBS domain protein compare
PP_1076 +0.5 2.3 aquaglyceroporin compare
PP_3743 +0.5 2.1 conserved exported protein of unknown function compare
PP_1048 +0.5 0.6 putative protein secretion protein for export compare
PP_0827 +0.5 1.6 putative phosphonate transport system permease protein PtxC compare
PP_4626 +0.5 2.3 holin regulator of murein hydrolases compare
PP_2970 +0.5 1.3 conserved exported protein of unknown function compare
PP_2931 +0.5 1.6 conserved protein of unknown function compare
PP_3245 +0.5 0.9 conserved protein of unknown function compare
PP_0137 +0.5 2.6 glutamate/aspartate-proton DAACS transporter compare
PP_0568 +0.5 2.1 conserved protein of unknown function compare
PP_2745 +0.4 1.1 Universal stress protein family compare
PP_3753 +0.4 2.0 Transcriptional regulator, AraC family compare
PP_2421 +0.4 1.9 Acetyltransferase, GNAT family compare
PP_5033 +0.4 3.2 Urocanate hydratase compare
PP_1998 +0.4 2.2 putative cell division protein compare
PP_5102 +0.4 2.3 conserved hypothetical protein compare
PP_2856 +0.4 2.1 conserved exported protein of unknown function compare
PP_3357 +0.4 1.5 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_2247 +0.4 1.6 putative Endoribonuclease compare
PP_1075 +0.4 3.2 glycerol kinase compare
PP_1326 +0.4 0.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0825 +0.4 1.6 phosphonates import ATP-binding protein compare
PP_4159 +0.4 1.4 Potassium-transporting ATPase C chain compare
PP_3647 +0.4 1.6 putative Oxidoreductase compare
PP_4688 +0.4 1.7 Heme/hemin ABC transporter, permease protein compare
PP_4355 +0.4 1.3 flagellar export apparatus subunit compare
PP_2064 +0.4 2.5 Multidrug efflux RND membrane fusion protein compare
PP_5429 +0.4 1.4 protein of unknown function compare
PP_2597 +0.4 1.6 conserved protein of unknown function compare
PP_5140 +0.4 1.3 Transcriptional regulator, MerR family compare
PP_1907 +0.4 1.9 Hydrolase, haloacid dehalogenase-like family compare
PP_5139 +0.4 1.9 cadmium translocating P-type ATPase compare
PP_0978 +0.4 0.7 conserved protein of unknown function compare
PP_4959 +0.4 3.2 diguanylate cyclase compare
PP_2413 +0.4 3.0 GGDEF family protein compare
PP_5156 +0.4 1.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source Ammonium chloride in Pseudomonas putida KT2440

For nitrogen source Ammonium chloride across organisms