Experiment set55S341 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride and TNT nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_3511 -5.7 -12.7 Branched-chain-amino-acid aminotransferase compare
PP_0345 -5.3 -8.5 putative Heptose kinase WapP compare
PP_4679 -5.3 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.3 -6.2 Acetylglutamate kinase compare
PP_1986 -5.3 -6.0 3-isopropylmalate dehydratase small subunit compare
PP_1985 -5.2 -7.1 3-isopropylmalate dehydratase large subunit compare
PP_5098 -5.2 -12.6 methionine biosynthesis protein MetW compare
PP_4890 -5.2 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4099 -5.1 -43.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -5.0 -28.4 Sensor protein GacS compare
PP_2168 -4.7 -12.5 Transaldolase compare
PP_2163 -4.7 -6.4 VacJ lipoprotein compare
PP_4678 -4.7 -18.0 Ketol-acid reductoisomerase compare
PP_5346 -4.7 -14.5 pyruvate carboxylase subunit B compare
PP_4680 -4.6 -18.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -4.6 -8.7 Indole-3-glycerol phosphate synthase compare
PP_1384 -4.6 -9.8 Probable efflux pump outer membrane protein TtgC compare
PP_0184 -4.5 -6.2 Argininosuccinate lyase compare
PP_0292 -4.5 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -4.5 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -4.5 -13.7 Histidinol dehydrogenase compare
PP_1088 -4.5 -15.3 Argininosuccinate synthase compare
PP_5347 -4.4 -17.1 pyruvate carboxylase subunit A compare
PP_0083 -4.4 -6.0 tryptophan synthase beta chain compare
PP_4937 -4.4 -3.0 toluene tolerance protein compare
PP_1995 -4.4 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0289 -4.4 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1386 -4.3 -11.5 Probable efflux pump periplasmic linker TtgA compare
PP_5097 -4.3 -15.8 homoserine O-acetyltransferase compare
PP_0962 -4.3 -4.1 toluene-tolerance protein compare
PP_2001 -4.2 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_0965 -4.2 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1385 -4.2 -18.5 Probable efflux pump membrane transporter TtgB compare
PP_0082 -4.2 -4.9 tryptophan synthase alpha chain compare
PP_1988 -4.2 -12.4 3-isopropylmalate dehydrogenase compare
PP_0293 -4.1 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5155 -4.1 -6.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -4.1 -10.0 phosphoserine phosphatase compare
PP_1079 -4.0 -8.9 Ornithine carbamoyltransferase compare
PP_0421 -3.9 -8.2 Anthranilate phosphoribosyltransferase compare
PP_0961 -3.8 -7.7 toluene tolerance protein compare
PP_5348 -3.8 -17.4 Transcriptional regulator, LysR family compare
PP_2371 -3.8 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1232 -3.8 -10.7 conserved exported protein of unknown function compare
PP_0691 -3.8 -3.6 Glutamate 5-kinase compare
PP_0417 -3.7 -18.9 Anthranilate synthase component 1 compare
PP_5014 -3.7 -6.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_2475 -3.6 -3.5 Transcriptional regulator, TetR family compare
PP_0809 -3.5 -15.0 disulfide bond formation protein B compare
PP_5015 -3.4 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5128 -3.3 -7.1 Dihydroxy-acid dehydratase compare
PP_4723 -3.3 -5.5 Carbamoyl-phosphate synthase large chain compare
PP_5185 -3.3 -8.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0346 -3.3 -11.2 putative Heptose kinase WapQ compare
PP_4696 -3.3 -5.7 Nitrogen regulation protein NR(I) compare
PP_2327 -3.3 -10.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0787 -3.2 -6.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0960 -3.1 -8.5 phospholipid ABC transporter binding protein compare
PP_0959 -3.1 -4.1 phospholipid ABC transporter compare
PP_1231 -2.9 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0290 -2.8 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0958 -2.8 -4.9 phospholipid ABC transporter ATP-binding subunit compare
PP_4724 -2.8 -2.7 Carbamoyl-phosphate synthase small chain compare
PP_0834 -2.7 -2.0 Sec translocation complex subunit YajC compare
PP_0127 -2.6 -4.5 Thiol:disulfide interchange protein compare
PP_0291 -2.6 -2.9 conserved protein of unknown function compare
PP_3999 -2.6 -6.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3417 -2.6 -5.9 D-gluconate transporter compare
PP_0377 -2.5 -3.6 coenzyme PQQ synthesis protein D compare
PP_4943 -2.5 -1.6 putative Glycosyl transferase compare
PP_1025 -2.5 -9.8 2-isopropylmalate synthase compare
PP_2378 -2.4 -3.5 Fe/S biogenesis protein NfuA compare
PP_4782 -2.3 -5.4 Phosphomethylpyrimidine kinase compare
PP_2370 -2.3 -2.7 conserved protein of unknown function compare
PP_5217 -2.3 -18.8 Polyphosphate kinase compare
PP_0007 -2.2 -3.1 conserved hypothetical protein compare
PP_5095 -2.2 -1.9 pyrroline-5-carboxylate reductase compare
PP_5114 -2.1 -2.8 putative adenine methyltransferase compare
PP_2328 -2.0 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_5303 -2.0 -7.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3819 -2.0 -7.9 glutathione reductase (NADPH) compare
PP_0339 -2.0 -3.2 Pyruvate dehydrogenase E1 component compare
PP_1941 -2.0 -7.4 conserved protein of unknown function compare
PP_4532 -1.9 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1623 -1.9 -9.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4993 -1.9 -3.3 Glutathione synthetase compare
PP_2137 -1.9 -4.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1664 -1.9 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0435 -1.8 -13.9 Peptidase, M23/M37 family compare
PP_1655 -1.8 -5.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1233 -1.8 -4.8 sulfurtransferase compare
PP_5104 -1.8 -7.5 thiazole synthase compare
PP_0980 -1.8 -7.9 Probable cytosol aminopeptidase compare
PP_0368 -1.8 -10.6 putative Acyl-CoA dehydrogenase compare
PP_3505 -1.7 -2.5 conserved protein of unknown function compare
PP_1444 -1.7 -9.7 quinoprotein glucose dehydrogenase compare
PP_0793 -1.7 -7.7 Phosphotransferase system, fructose-specific EI/HPr/EIIA components compare
PP_0381 -1.7 -8.1 Coenzyme PQQ synthesis protein F compare
PP_4700 -1.7 -3.9 pantothenate synthetase compare
PP_0794 -1.7 -4.2 1-phosphofructokinase monomer compare
PP_0735 -1.6 -3.0 molybdopterin-synthase adenylyltransferase compare
PP_0586 -1.6 -8.6 cadmium translocating P-type ATPase compare
PP_5075 -1.6 -10.3 glutamate synthase (NADPH) beta subunit compare
PP_2136 -1.6 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3821 -1.6 -7.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1362 -1.5 -3.6 pyruvate kinase II compare
PP_0378 -1.5 -8.0 Pyrroloquinoline-quinone synthase compare
PP_0379 -1.5 -6.7 Coenzyme PQQ synthesis protein B compare
PP_1656 -1.5 -6.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_0795 -1.5 -7.0 fructose PTS permease - IIBC component compare
PP_2356 -1.5 -8.3 putative Phytochrome family protein compare
PP_0048 -1.5 -2.1 conserved protein of unknown function compare
PP_4150 -1.5 -7.2 microcin C transporter - ATP binding subunit compare
PP_0001 -1.5 -1.5 probable chromosome-partitioning protein compare
PP_1303 -1.5 -5.4 Sulfate adenylyltransferase subunit 2 compare
PP_5076 -1.5 -11.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_0420 -1.5 -4.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4922 -1.4 -9.4 Phosphomethylpyrimidine synthase compare
PP_1826 -1.4 -2.5 Hydrolase, isochorismatase family compare
PP_0913 -1.4 -6.0 conserved exported protein of unknown function compare
PP_0949 -1.3 -5.0 putative ATP-binding protein UPF0042 compare
PP_4148 -1.3 -7.0 putative inner membrane ABC transporter permease protein compare
PP_1348 -1.3 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0376 -1.3 -6.5 Coenzyme PQQ synthesis protein E compare
PP_0910 -1.3 -4.6 conserved exported protein of unknown function compare
PP_0164 -1.3 -6.7 conserved protein of unknown function compare
PP_3474 -1.3 -2.5 putative Curli fiber protein CsgE compare
PP_0540 -1.3 -6.2 conserved inner membrane protein compare
PP_0513 -1.2 -2.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5331 -1.2 -4.7 Long-chain acyl-CoA thioester hydrolase compare
PP_1022 -1.2 -3.6 glucose 6-phosphate-1-dehydrogenase compare
PP_1366 -1.2 -1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_5035 -1.2 -5.5 Histidine utilization repressor compare
PP_2354 -1.2 -6.9 Sensory box histidine kinase/response regulator compare
PP_2348 -1.2 -3.8 Sensor histidine kinase compare
PP_0340 -1.2 -7.8 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5500 -1.2 -4.3 protein of unknown function compare
PP_4994 -1.2 -3.8 conserved protein of unknown function compare
PP_4804 -1.2 -1.8 RlpA-like lipoprotein compare
PP_4098 -1.2 -1.4 UvrABC system protein C compare
PP_5380 -1.2 -9.8 copper resistance protein A compare
PP_1110 -1.2 -3.4 serine acetyltransferase compare
PP_2999 -1.2 -1.9 Glyoxalase family protein compare
PP_1208 -1.2 -2.3 conserved protein of unknown function, SlyX family compare
PP_4136 -1.1 -1.6 Transcriptional regulator, LuxR family compare
PP_3286 -1.1 -3.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1460 -1.1 -7.3 putative Membrane protein compare
PP_4268 -1.1 -0.8 nucleoid-associated broad specificity regulator compare
PP_0984 -1.1 -4.3 conserved membrane protein of unknown function compare
PP_3924 -1.1 -2.0 conserved protein of unknown function compare
PP_1215 -1.1 -0.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4147 -1.1 -6.3 microcin C transporter - periplasmic binding protein compare
PP_1304 -1.1 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5146 -1.1 -5.7 RNA pyrophosphohydrolase compare
PP_2144 -1.1 -2.7 Transcriptional regulator, TetR family compare
PP_2429 -1.1 -2.0 putative Membrane protein compare
PP_1645 -1.1 -3.6 putative enzyme compare
PP_2700 -1.1 -2.9 AhpC/TSA family protein compare
PP_4695 -1.0 -5.7 Sensory box histidine kinase compare
PP_4847 -1.0 -3.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_3105 -1.0 -2.2 conserved membrane protein of unknown function compare
PP_4471 -1.0 -3.2 Magnesium transporter compare
PP_1054 -1.0 -2.3 Type II secretion pathway protein XcpZ compare
PP_0380 -1.0 -2.8 Coenzyme PQQ synthesis protein A compare
PP_5453 -1.0 -1.4 conserved protein of unknown function compare
PP_1012 -1.0 -3.5 DNA-binding response regulator compare
PP_2231 -1.0 -1.9 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_5393 -1.0 -1.5 putative metal-binding chaperone compare
PP_2337 -1.0 -1.9 aconitate isomerase compare
PP_0362 -1.0 -6.2 Biotin synthase compare
PP_4699 -1.0 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5055 -1.0 -1.8 Sulfurtransferase compare
PP_4789 -1.0 -2.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4149 -1.0 -4.9 putative inner membrane ABC transporter permease protein compare
PP_5329 -1.0 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4406 -1.0 -2.6 conserved protein of unknown function compare
PP_0852 -0.9 -2.7 Transcriptional regulator, Cro/CI family compare
PP_5001 -0.9 -2.6 protease HslVU, ATPase component compare
PP_0003 -0.9 -2.3 16S RNA methyltransferase compare
PP_3649 -0.9 -2.5 Transcriptional regulator, GntR family compare
PP_5322 -0.9 -3.1 putative metal ion transporter compare
PP_4785 -0.9 -4.4 conserved exported protein of unknown function compare
PP_4262 -0.9 -2.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4570 -0.9 -6.2 conserved protein of unknown function compare
PP_1207 -0.9 -3.8 conserved protein of unknown function compare
PP_5456 -0.9 -1.7 conserved protein of unknown function compare
PP_0251 -0.9 -4.4 conserved membrane protein of unknown function compare
PP_0674 -0.9 -5.1 ADP/ATP ratio sensor and inhibitor of translation compare
PP_0126 -0.9 -2.7 Cytochrome c4 compare
PP_4126 -0.9 -0.8 NADH-quinone oxidoreductase subunit I compare
PP_0948 -0.9 -2.3 Phosphocarrier protein HPr compare
PP_4131 -0.9 -2.5 NADH-quinone oxidoreductase subunit N compare
PP_3258 -0.9 -2.0 conserved protein of unknown function compare
PP_0855 -0.9 -2.3 conserved protein of unknown function compare
PP_1734 -0.9 -0.8 Probable septum site-determining protein MinC compare
PP_4555 -0.8 -2.8 conserved protein of unknown function compare
PP_2433 -0.8 -1.4 conserved protein of unknown function compare
PP_2976 -0.8 -1.6 putative transposase compare
PP_4726 -0.8 -1.8 Chaperone protein DnaJ compare
PP_1663 -0.8 -4.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source Ammonium chloride in Pseudomonas putida KT2440

For nitrogen source Ammonium chloride across organisms