Experiment set55S338 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0422 -6.1 -7.2 Indole-3-glycerol phosphate synthase compare
PP_4678 -6.0 -18.4 Ketol-acid reductoisomerase compare
PP_1988 -5.5 -13.3 3-isopropylmalate dehydrogenase compare
PP_0967 -5.4 -13.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -5.4 -6.4 Ornithine carbamoyltransferase compare
PP_0966 -5.3 -14.5 Histidinol dehydrogenase compare
PP_5185 -5.2 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -5.2 -6.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -5.2 -19.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -4.8 -18.5 homoserine O-acetyltransferase compare
PP_2001 -4.8 -11.2 O-succinylhomoserine sulfhydrylase compare
PP_0787 -4.7 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -4.7 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_2168 -4.6 -11.9 Transaldolase compare
PP_0184 -4.6 -3.2 Argininosuccinate lyase compare
PP_1995 -4.6 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -4.6 -13.0 Argininosuccinate synthase compare
PP_5098 -4.5 -12.4 methionine biosynthesis protein MetW compare
PP_1231 -4.4 -8.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1986 -4.4 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_5155 -4.3 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -4.3 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -4.2 -20.0 Anthranilate synthase component 1 compare
PP_0083 -4.1 -4.9 tryptophan synthase beta chain compare
PP_0290 -4.1 -11.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5128 -4.1 -7.4 Dihydroxy-acid dehydratase compare
PP_4890 -4.1 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -4.1 -9.6 Anthranilate phosphoribosyltransferase compare
PP_5289 -4.0 -4.2 Acetylglutamate kinase compare
PP_0965 -3.8 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5014 -3.8 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4909 -3.8 -9.0 phosphoserine phosphatase compare
PP_0691 -3.7 -2.6 Glutamate 5-kinase compare
PP_2327 -3.7 -9.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0082 -3.6 -5.4 tryptophan synthase alpha chain compare
PP_0292 -3.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0291 -3.5 -4.5 conserved protein of unknown function compare
PP_5015 -3.4 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0593 -3.1 -1.1 putative ribosome-binding factor compare
PP_4723 -3.1 -3.7 Carbamoyl-phosphate synthase large chain compare
PP_1025 -3.0 -9.9 2-isopropylmalate synthase compare
PP_5303 -2.9 -6.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3999 -2.7 -4.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5347 -2.5 -12.0 pyruvate carboxylase subunit A compare
PP_2370 -2.5 -2.6 conserved protein of unknown function compare
PP_4700 -2.5 -4.3 pantothenate synthetase compare
PP_4724 -2.5 -1.7 Carbamoyl-phosphate synthase small chain compare
PP_5346 -2.4 -11.0 pyruvate carboxylase subunit B compare
PP_5095 -2.3 -2.5 pyrroline-5-carboxylate reductase compare
PP_2371 -2.3 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -2.3 -5.5 Nitrogen regulation protein NR(I) compare
PP_1664 -2.3 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_2328 -2.3 -6.1 Phosphoadenosine phosphosulfate reductase compare
PP_1362 -2.2 -3.9 pyruvate kinase II compare
PP_4782 -2.2 -4.3 Phosphomethylpyrimidine kinase compare
PP_1468 -2.1 -2.2 Tyrosine recombinase XerD compare
PP_0420 -1.9 -5.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5114 -1.9 -2.4 putative adenine methyltransferase compare
PP_0339 -1.9 -1.3 Pyruvate dehydrogenase E1 component compare
PP_3551 -1.8 -2.9 DNA-binding response regulator, LuxR family compare
PP_5331 -1.8 -5.0 Long-chain acyl-CoA thioester hydrolase compare
PP_0834 -1.8 -2.1 Sec translocation complex subunit YajC compare
PP_0735 -1.8 -3.1 molybdopterin-synthase adenylyltransferase compare
PP_1366 -1.7 -2.4 Transcriptional regulator MvaT, P16 subunit compare
PP_5348 -1.7 -9.6 Transcriptional regulator, LysR family compare
PP_2388 -1.7 -5.6 Transporter, LysE family compare
PP_1233 -1.6 -3.9 sulfurtransferase compare
PP_5104 -1.4 -5.1 thiazole synthase compare
PP_2429 -1.4 -2.0 putative Membrane protein compare
PP_2378 -1.4 -2.3 Fe/S biogenesis protein NfuA compare
PP_3506 -1.4 -4.8 Magnesium chelatase, subunit ChII compare
PP_1348 -1.4 -6.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1328 -1.3 -3.2 Protein MraZ compare
PP_1788 -1.3 -2.1 conserved protein of unknown function compare
PP_2414 -1.3 -1.0 conserved exported protein of unknown function compare
PP_2348 -1.2 -4.4 Sensor histidine kinase compare
PP_4699 -1.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4922 -1.2 -7.4 Phosphomethylpyrimidine synthase compare
PP_1912 -1.2 -3.4 Phosphate acyltransferase compare
PP_0833 -1.2 -0.8 queuine tRNA-ribosyltransferase compare
PP_5705 -1.1 -2.2 protein of unknown function compare
PP_0377 -1.1 -1.8 coenzyme PQQ synthesis protein D compare
PP_4593 -1.1 -1.4 conserved protein of unknown function compare
PP_4262 -1.1 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1214 -1.1 -2.0 putative transcriptional regulatory protein compare
PP_2390 -1.1 -5.1 Transcriptional regulator, LysR family compare
PP_1676 -1.1 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0435 -1.1 -8.6 Peptidase, M23/M37 family compare
PP_0913 -1.1 -5.3 conserved exported protein of unknown function compare
PP_3821 -1.1 -6.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0949 -1.1 -5.0 putative ATP-binding protein UPF0042 compare
PP_1681 -1.1 -6.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1022 -1.1 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0362 -1.0 -6.9 Biotin synthase compare
PP_4133 -1.0 -3.1 Transcriptional regulator-related protein compare
PP_1304 -1.0 -6.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5216 -1.0 -2.1 exopolyphosphatase compare
PP_1826 -1.0 -2.0 Hydrolase, isochorismatase family compare
PP_3726 -1.0 -1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_3930 -1.0 -2.7 conserved exported protein of unknown function compare
PP_2375 -1.0 -6.7 cobalamin-dependent methionine synthase compare
PP_1303 -1.0 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_2540 -1.0 -2.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4726 -1.0 -1.0 Chaperone protein DnaJ compare
PP_4977 -0.9 -5.3 5,10-methylenetetrahydrofolate reductase compare
PP_1675 -0.9 -5.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1677 -0.9 -2.8 Adenosyl-cobyric acid synthase compare
PP_0164 -0.9 -4.4 conserved protein of unknown function compare
PP_3507 -0.9 -5.8 Aerobic cobaltochelatase subunit CobN compare
PP_1629 -0.9 -2.3 Protein RecA compare
PP_1207 -0.9 -3.6 conserved protein of unknown function compare
PP_5267 -0.9 -2.2 putative cytochrome c5 compare
PP_2976 -0.9 -1.6 putative transposase compare
PP_4251 -0.9 -3.2 cytochrome c oxidase subunit, cbb3-type compare
PP_5393 -0.9 -1.3 putative metal-binding chaperone compare
PP_1428 -0.9 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_1054 -0.9 -1.6 Type II secretion pathway protein XcpZ compare
PP_1215 -0.9 -0.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_3417 -0.9 -3.4 D-gluconate transporter compare
PP_5456 -0.9 -2.0 conserved protein of unknown function compare
PP_3505 -0.9 -1.9 conserved protein of unknown function compare
PP_0910 -0.9 -3.8 conserved exported protein of unknown function compare
PP_4227 -0.9 -1.7 conserved protein of unknown function compare
PP_4126 -0.9 -0.6 NADH-quinone oxidoreductase subunit I compare
PP_2748 -0.9 -1.8 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_3102 -0.9 -2.9 conserved protein of unknown function compare
PP_5748 -0.9 -1.9 cytochrome c heme lyase subunit compare
PP_1319 -0.9 -4.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0909 -0.9 -4.6 conserved exported protein of unknown function compare
PP_0084 -0.9 -3.8 HTH-type transcriptional regulator TrpI compare
PP_2847 -0.8 -1.9 Urease accessory protein UreJ compare
PP_0126 -0.8 -2.5 Cytochrome c4 compare
PP_4902 -0.8 -0.9 Oligoribonuclease compare
PP_0381 -0.8 -3.9 Coenzyme PQQ synthesis protein F compare
PP_0127 -0.8 -2.6 Thiol:disulfide interchange protein compare
PP_2681 -0.8 -1.2 coenzyme PQQ synthesis protein D compare
PP_4826 -0.8 -3.4 Precorrin-3B C17-methyltransferase compare
PP_4940 -0.8 -4.3 Putative glycosyltransferase compare
PP_2337 -0.8 -1.4 aconitate isomerase compare
PP_0376 -0.8 -4.8 Coenzyme PQQ synthesis protein E compare
PP_2929 -0.8 -4.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0195 -0.8 -1.4 conserved protein of unknown function compare
PP_3790 -0.8 -4.2 diaminopimelate epimerase compare
PP_1553 -0.8 -1.6 conserved protein of unknown function compare
PP_1672 -0.8 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2943 -0.8 -3.2 putative Cytochrome c551 peroxidase compare
PP_2324 -0.8 -3.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1528 -0.8 -1.0 conserved protein of unknown function compare
PP_2622 -0.8 -1.7 conserved protein of unknown function compare
PP_4827 -0.8 -4.7 Precorrin-2 C(20)-methyltransferase compare
PP_4273 -0.8 -2.3 Transcriptional regulator, MerR family compare
PP_4804 -0.8 -1.1 RlpA-like lipoprotein compare
PP_2820 -0.8 -1.8 HTH-type transcriptional regulator nfxB compare
PP_4532 -0.8 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0048 -0.8 -1.2 conserved protein of unknown function compare
PP_5227 -0.7 -3.9 diaminopimelate decarboxylase compare
PP_1493 -0.7 -2.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5035 -0.7 -3.3 Histidine utilization repressor compare
PP_4471 -0.7 -2.1 Magnesium transporter compare
PP_4847 -0.7 -1.4 chaperone modulatory of CbpA co-chaperone protein compare
PP_2077 -0.7 -3.6 diaminopimelate decarboxylase compare
PP_3508 -0.7 -1.5 Protein CobW compare
PP_3904 -0.7 -2.8 conserved protein of unknown function compare
PP_5583 -0.7 -1.5 conserved protein of unknown function compare
PP_2304 -0.7 -4.2 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5083 -0.7 -2.0 putative Type IV pili biogenesis protein PilM compare
PP_0627 -0.7 -1.6 conserved protein of unknown function compare
PP_3935 -0.7 -1.7 conserved protein of unknown function compare
PP_4199 -0.7 -0.7 putative Lipoprotein compare
PP_1293 -0.7 -0.8 molybdopterin synthase small subunit compare
PP_1198 -0.7 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5640 -0.7 -1.9 conserved protein of unknown function compare
PP_0685 -0.7 -1.5 conserved protein of unknown function compare
PP_3773 -0.7 -1.5 conserved protein of unknown function compare
PP_3328 -0.7 -1.7 putative Ring-cleaving dioxygenase compare
PP_4829 -0.7 -1.3 putative precorrin-3B synthase compare
PP_1008 -0.7 -1.4 RNA polymerase subunit sigma-24 compare
PP_2416 -0.7 -0.8 putative Iron ABC transporter, ATP-binding protein compare
PP_1673 -0.7 -2.5 cobyrinate a,c-diamide synthase compare
PP_5229 -0.7 -2.0 conserved protein of unknown function compare
PP_1444 -0.7 -4.3 quinoprotein glucose dehydrogenase compare
PP_5473 -0.7 -1.4 putative transcriptional regulator, LuxR family compare
PP_3191 -0.7 -2.1 putative threonine ammonia-lyase / dehydratase compare
PP_0406 -0.7 -3.0 Nucleotidyltransferase family protein compare
PP_1309 -0.7 -3.5 conserved exported protein of unknown function compare
PP_5093 -0.7 -0.8 twitching motility protein compare
PP_3789 -0.7 -4.0 putative Efflux transporter compare
PP_0001 -0.7 -0.8 probable chromosome-partitioning protein compare
PP_3989 -0.7 -2.2 DNA-cytosine methyltransferase compare
PP_0198 -0.7 -1.9 putative transporter compare
PP_1374 -0.7 -2.9 conserved protein of unknown function compare
PP_4555 -0.7 -1.6 conserved protein of unknown function compare
PP_1206 -0.7 -3.3 basic-amino-acid specific porin OprD compare
PP_4038 -0.6 -3.3 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_2619 -0.6 -2.2 FHA domain protein compare
PP_1943 -0.6 -2.8 formyltetrahydrofolate deformylase compare
PP_2700 -0.6 -1.8 AhpC/TSA family protein compare
PP_1300 -0.6 -2.0 putative amino acid ABC transporter - ATP-binding subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms