Experiment set55S335 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1988 -6.2 -11.0 3-isopropylmalate dehydrogenase compare
PP_4678 -6.1 -17.2 Ketol-acid reductoisomerase compare
PP_3511 -5.8 -11.8 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.8 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_0966 -5.7 -11.6 Histidinol dehydrogenase compare
PP_4890 -5.2 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -5.2 -5.0 Acetylglutamate kinase compare
PP_4680 -5.1 -18.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -5.1 -11.7 Transaldolase compare
PP_5014 -5.0 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5098 -5.0 -11.0 methionine biosynthesis protein MetW compare
PP_5097 -4.8 -17.1 homoserine O-acetyltransferase compare
PP_1231 -4.7 -7.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0422 -4.7 -8.1 Indole-3-glycerol phosphate synthase compare
PP_4679 -4.7 -7.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -4.5 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0417 -4.5 -18.9 Anthranilate synthase component 1 compare
PP_0291 -4.3 -4.6 conserved protein of unknown function compare
PP_1995 -4.3 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0293 -4.2 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5128 -4.2 -7.3 Dihydroxy-acid dehydratase compare
PP_1088 -4.1 -14.2 Argininosuccinate synthase compare
PP_0289 -4.1 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -4.0 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -4.0 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -4.0 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -4.0 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -3.9 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_0184 -3.8 -5.2 Argininosuccinate lyase compare
PP_0082 -3.8 -4.5 tryptophan synthase alpha chain compare
PP_5155 -3.8 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0967 -3.8 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4909 -3.5 -8.6 phosphoserine phosphatase compare
PP_2327 -3.4 -9.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0691 -3.4 -3.3 Glutamate 5-kinase compare
PP_0421 -3.4 -7.7 Anthranilate phosphoribosyltransferase compare
PP_5303 -3.4 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0083 -3.3 -7.0 tryptophan synthase beta chain compare
PP_5095 -3.3 -2.2 pyrroline-5-carboxylate reductase compare
PP_2001 -3.3 -8.2 O-succinylhomoserine sulfhydrylase compare
PP_1079 -3.3 -6.5 Ornithine carbamoyltransferase compare
PP_4723 -3.1 -3.0 Carbamoyl-phosphate synthase large chain compare
PP_1025 -3.0 -9.7 2-isopropylmalate synthase compare
PP_2371 -2.9 -6.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5346 -2.7 -11.6 pyruvate carboxylase subunit B compare
PP_0735 -2.7 -3.3 molybdopterin-synthase adenylyltransferase compare
PP_0787 -2.6 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3999 -2.6 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -2.6 -5.5 Nitrogen regulation protein NR(I) compare
PP_2328 -2.5 -6.2 Phosphoadenosine phosphosulfate reductase compare
PP_4724 -2.4 -1.7 Carbamoyl-phosphate synthase small chain compare
PP_2429 -2.3 -3.4 putative Membrane protein compare
PP_5347 -2.2 -11.5 pyruvate carboxylase subunit A compare
PP_0420 -2.2 -6.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5104 -2.1 -8.6 thiazole synthase compare
PP_5348 -2.1 -11.3 Transcriptional regulator, LysR family compare
PP_5331 -2.1 -5.9 Long-chain acyl-CoA thioester hydrolase compare
PP_1362 -2.0 -3.5 pyruvate kinase II compare
PP_1214 -1.9 -2.5 putative transcriptional regulatory protein compare
PP_0339 -1.8 -1.2 Pyruvate dehydrogenase E1 component compare
PP_4782 -1.8 -4.5 Phosphomethylpyrimidine kinase compare
PP_1348 -1.6 -5.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4268 -1.5 -1.1 nucleoid-associated broad specificity regulator compare
PP_5216 -1.5 -2.8 exopolyphosphatase compare
PP_1233 -1.5 -4.9 sulfurtransferase compare
PP_3808 -1.5 -2.3 Antibiotic synthesis protein MbtH compare
PP_5114 -1.4 -2.2 putative adenine methyltransferase compare
PP_1097 -1.4 -0.9 Methionine--tRNA ligase compare
PP_0377 -1.4 -1.5 coenzyme PQQ synthesis protein D compare
PP_1664 -1.4 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1428 -1.4 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_1328 -1.3 -3.0 Protein MraZ compare
PP_1142 -1.3 -0.9 conserved protein of unknown function compare
PP_4922 -1.3 -8.3 Phosphomethylpyrimidine synthase compare
PP_0775 -1.3 -1.8 conserved protein of unknown function compare
PP_3241 -1.3 -0.8 conserved exported protein of unknown function compare
PP_4262 -1.2 -2.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2378 -1.2 -2.1 Fe/S biogenesis protein NfuA compare
PP_2929 -1.2 -6.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3505 -1.2 -2.4 conserved protein of unknown function compare
PP_1672 -1.2 -3.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1676 -1.2 -3.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0435 -1.2 -8.5 Peptidase, M23/M37 family compare
PP_2388 -1.1 -2.7 Transporter, LysE family compare
PP_4917 -1.1 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4977 -1.1 -6.5 5,10-methylenetetrahydrofolate reductase compare
PP_3506 -1.1 -3.5 Magnesium chelatase, subunit ChII compare
PP_0362 -1.1 -6.9 Biotin synthase compare
PP_5000 -1.1 -1.3 peptidase component of the ATP-dependent HslVU protease compare
PP_1022 -1.1 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_2370 -1.1 -1.1 conserved protein of unknown function compare
PP_3790 -1.1 -6.1 diaminopimelate epimerase compare
PP_5583 -1.1 -2.1 conserved protein of unknown function compare
PP_5267 -1.1 -3.3 putative cytochrome c5 compare
PP_1912 -1.1 -2.9 Phosphate acyltransferase compare
PP_0832 -1.0 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2928 -1.0 -5.9 Saccharopine dehydrogenase compare
PP_4296 -1.0 -1.3 conserved exported protein of unknown function compare
PP_0949 -1.0 -4.3 putative ATP-binding protein UPF0042 compare
PP_4133 -1.0 -1.7 Transcriptional regulator-related protein compare
PP_3522 -1.0 -3.5 conserved protein of unknown function compare
PP_1304 -1.0 -6.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4561 -1.0 -0.8 stress response protein compare
PP_0839 -1.0 -2.1 tRNA Cm32/Um32 methyltransferase compare
PP_1366 -1.0 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_2375 -1.0 -6.6 cobalamin-dependent methionine synthase compare
PP_3726 -1.0 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_0381 -1.0 -4.7 Coenzyme PQQ synthesis protein F compare
PP_1678 -1.0 -2.6 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4829 -1.0 -2.0 putative precorrin-3B synthase compare
PP_3336 -0.9 -4.2 conserved protein of unknown function compare
PP_4320 -0.9 -4.9 cytochrome c-type biogenesis protein compare
PP_0833 -0.9 -0.8 queuine tRNA-ribosyltransferase compare
PP_4227 -0.9 -1.8 conserved protein of unknown function compare
PP_3551 -0.9 -1.1 DNA-binding response regulator, LuxR family compare
PP_5001 -0.9 -1.6 protease HslVU, ATPase component compare
PP_3904 -0.9 -3.3 conserved protein of unknown function compare
PP_1826 -0.9 -2.0 Hydrolase, isochorismatase family compare
PP_4726 -0.9 -0.9 Chaperone protein DnaJ compare
PP_2899 -0.9 -1.5 conserved exported protein of unknown function compare
PP_5240 -0.9 -2.8 Response regulator compare
PP_3892 -0.9 -1.0 conserved protein of unknown function compare
PP_3234 -0.9 -3.2 Heat shock protein, HSP20 family compare
PP_0127 -0.9 -3.2 Thiol:disulfide interchange protein compare
PP_3417 -0.9 -2.6 D-gluconate transporter compare
PP_1677 -0.9 -3.4 Adenosyl-cobyric acid synthase compare
PP_4251 -0.9 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3508 -0.9 -2.4 Protein CobW compare
PP_4793 -0.9 -1.2 conserved protein of unknown function compare
PP_0913 -0.9 -3.6 conserved exported protein of unknown function compare
PP_4700 -0.9 -1.9 pantothenate synthetase compare
PP_4126 -0.8 -0.6 NADH-quinone oxidoreductase subunit I compare
PP_0376 -0.8 -5.6 Coenzyme PQQ synthesis protein E compare
PP_1374 -0.8 -3.3 conserved protein of unknown function compare
PP_4370 -0.8 -2.0 Flagellar hook-basal body complex protein FliE compare
PP_2306 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4555 -0.8 -1.8 conserved protein of unknown function compare
PP_1303 -0.8 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_1658 -0.8 -2.7 conserved protein of unknown function compare
PP_5202 -0.8 -1.5 putative cell division protein compare
PP_3411 -0.8 -1.0 conserved protein of unknown function compare
PP_3105 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_2232 -0.8 -2.9 XRE family transcriptional regulator compare
PP_5652 -0.8 -1.2 conserved protein of unknown function, phage origin compare
PP_0195 -0.8 -1.6 conserved protein of unknown function compare
PP_0380 -0.8 -3.2 Coenzyme PQQ synthesis protein A compare
PP_1675 -0.8 -3.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3447 -0.8 -1.0 conserved membrane protein of unknown function compare
PP_3328 -0.8 -1.1 putative Ring-cleaving dioxygenase compare
PP_1681 -0.8 -4.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2337 -0.8 -1.2 aconitate isomerase compare
PP_3507 -0.8 -4.6 Aerobic cobaltochelatase subunit CobN compare
PP_5035 -0.8 -4.3 Histidine utilization repressor compare
PP_0910 -0.8 -3.0 conserved exported protein of unknown function compare
PP_3693 -0.8 -2.3 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3211 -0.8 -2.2 ABC transporter, ATP-binding protein compare
PP_1038 -0.8 -1.9 conserved protein of unknown function compare
PP_5052 -0.8 -2.8 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2348 -0.8 -3.7 Sensor histidine kinase compare
PP_3989 -0.7 -2.4 DNA-cytosine methyltransferase compare
PP_4832 -0.7 -1.5 Precorrin-6x reductase compare
PP_2177 -0.7 -2.3 putative transcriptional regulator compare
PP_2568 -0.7 -0.9 Ring-cleaving dioxygenase compare
PP_2681 -0.7 -0.9 coenzyme PQQ synthesis protein D compare
PP_2390 -0.7 -3.1 Transcriptional regulator, LysR family compare
PP_5483 -0.7 -1.1 conserved protein of unknown function compare
PP_0235 -0.7 -2.8 Peroxidase compare
PP_4814 -0.7 -1.6 ATP-dependent protease La domain protein compare
PP_4260 -0.7 -2.7 conserved protein of unknown function compare
PP_0848 -0.7 -1.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5350 -0.7 -1.5 Transcriptional regulator, RpiR family compare
PP_2442 -0.7 -1.0 conserved protein of unknown function, DUF480 family compare
PP_0984 -0.7 -2.2 conserved membrane protein of unknown function compare
PP_5328 -0.7 -2.1 putative phosphate transport system permease protein compare
PP_2764 -0.7 -1.3 FMN reductase (NADPH) compare
PP_5229 -0.7 -1.9 conserved protein of unknown function compare
PP_5548 -0.7 -2.3 protein of unknown function compare
PP_1017 -0.7 -3.0 mannose/glucose ABC transporter, permease protein compare
PP_4073 -0.7 -1.8 conserved exported protein of unknown function compare
PP_1034 -0.7 -3.4 multicopper oxidase compare
PP_1489 -0.7 -2.0 CheW domain protein compare
PP_3427 -0.7 -2.6 Multidrug efflux RND outer membrane protein OprN compare
PP_1742 -0.7 -1.4 conserved inner membrane protein of unknown function compare
PP_0406 -0.7 -3.4 Nucleotidyltransferase family protein compare
PP_3258 -0.7 -1.4 conserved protein of unknown function compare
PP_2634 -0.7 -3.5 putative Cellulose synthase compare
PP_5393 -0.7 -1.1 putative metal-binding chaperone compare
PP_3312 -0.7 -1.5 putative Heat shock protein compare
PP_5107 -0.7 -2.8 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_4054 -0.7 -1.5 conserved protein of unknown function compare
PP_2999 -0.7 -1.2 Glyoxalase family protein compare
PP_0685 -0.7 -1.3 conserved protein of unknown function compare
PP_0874 -0.7 -1.7 conserved protein of unknown function compare
PP_1691 -0.7 -2.1 conserved protein of unknown function compare
PP_3238 -0.7 -2.1 putative Transcriptional regulator PyrR compare
PP_2740 -0.7 -1.2 Transcriptional regulator, MerR family compare
PP_2976 -0.7 -1.2 putative transposase compare
PP_4830 -0.7 -2.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_4684 -0.7 -3.7 conserved protein of unknown function with kinase-like domain compare
PP_0378 -0.7 -3.8 Pyrroloquinoline-quinone synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms