| | gene | name | fitness | t score | description | |
|---|
| b1480 | sra | -2.4 | -2.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b4520 | ymgF | -2.2 | -2.4 | hypothetical protein (NCBI) | compare |
| b4202 | rpsR | -2.1 | -2.0 | 30S ribosomal protein S18 (NCBI) | compare |
| b3183 | obgE | -1.9 | -1.9 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3962 | udhA | -1.8 | -8.3 | putative oxidoreductase (VIMSS) | compare |
| b3164 | pnp | -1.7 | -3.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1572 | ydfB | -1.7 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3390 | aroK | -1.6 | -3.1 | shikimate kinase I (NCBI) | compare |
| b2330 | yfcB | -1.5 | -2.2 | putative adenine-specific methylase (VIMSS) | compare |
| b0407 | yajC | -1.5 | -3.6 | preprotein translocase subunit YajC (NCBI) | compare |
| b2528 | iscA | -1.5 | -2.6 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b4676 | yoaK | -1.4 | -0.6 | expressed protein (RefSeq) | compare |
| b1524 | yneH | -1.4 | -1.2 | predicted glutaminase (NCBI) | compare |
| b2699 | recA | -1.3 | -0.9 | recombinase A (NCBI) | compare |
| b2363 | yfdT | -1.3 | -2.4 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b3979 | thrT | -1.3 | -0.4 | tRNA-Thr (NCBI) | compare |
| b1567 | intK | -1.3 | -1.6 | Qin prophage; predicted protein (RefSeq) | compare |
| b0858 | ybjO | -1.2 | -3.2 | predicted inner membrane protein (NCBI) | compare |
| b2318 | truA | -1.2 | -3.3 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3816 | corA | -1.2 | -7.2 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1557 | cspB | -1.2 | -2.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b3916 | pfkA | -1.2 | -2.8 | 6-phosphofructokinase (NCBI) | compare |
| b4163 | glyV | -1.2 | -1.3 | tRNA-Gly (NCBI) | compare |
| b3706 | trmE | -1.1 | -4.6 | tRNA modification GTPase (NCBI) | compare |
| b2620 | smpB | -1.1 | -1.3 | SsrA-binding protein (NCBI) | compare |
| b1427 | rimL | -1.1 | -3.0 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1563 | relE | -1.1 | -2.1 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1550 | b1550 | -1.1 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4041 | plsB | -1.1 | -1.6 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b4246 | pyrL | -1.1 | -1.8 | pyrBI operon leader peptide (NCBI) | compare |
| b0049 | apaH | -1.1 | -3.0 | diadenosinetetraphosphatase (NCBI) | compare |
| b3500 | gor | -1.1 | -1.8 | glutathione reductase (NCBI) | compare |
| b3181 | greA | -1.1 | -3.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2498 | upp | -1.1 | -2.5 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b4215 | ytfI | -1.0 | -1.5 | hypothetical protein (NCBI) | compare |
| b0386 | proC | -1.0 | -3.4 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b1648 | b1648 | -1.0 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1942 | fliJ | -1.0 | -1.3 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1175 | minD | -1.0 | -3.7 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b1612 | fumA | -1.0 | -4.0 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b4320 | fimH | -1.0 | -7.1 | minor component of type 1 fimbriae (NCBI) | compare |
| b1730 | ydjO | -1.0 | -1.2 | predicted protein (RefSeq) | compare |
| b3781 | trxA | -1.0 | -3.9 | thioredoxin 1 (VIMSS) | compare |
| b3613 | yibP | -1.0 | -3.1 | putative membrane protein (VIMSS) | compare |
| b1252 | tonB | -1.0 | -2.7 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b0471 | ybaB | -1.0 | -2.8 | hypothetical protein (NCBI) | compare |
| b1874 | cutC | -1.0 | -1.9 | copper homeostasis protein (NCBI) | compare |
| b0142 | folK | -1.0 | -0.6 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1583 | ynfB | -0.9 | -2.1 | hypothetical protein (NCBI) | compare |
| b1627 | rsxA | -0.9 | -3.0 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b0232 | yafN | -0.9 | -0.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1618 | uidR | -0.9 | -2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4316 | fimC | -0.9 | -6.2 | periplasmic chaperone, required for type 1 fimbriae (VIMSS) | compare |
| b2319 | usg | -0.9 | -3.4 | hypothetical protein (NCBI) | compare |
| b4232 | fbp | -0.9 | -6.0 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b3870 | glnA | -0.9 | -2.4 | glutamine synthetase (NCBI) | compare |
| b2312 | purF | -0.9 | -4.3 | amidophosphoribosyltransferase (NCBI) | compare |
| b3414 | gntY | -0.9 | -3.8 | predicted gluconate transport associated protein (NCBI) | compare |
| b0889 | lrp | -0.9 | -2.5 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b3761 | trpT | -0.9 | -1.4 | tRNA-Trp (NCBI) | compare |
| b3162 | deaD | -0.9 | -3.7 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b0888 | trxB | -0.8 | -2.3 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b4551 | yheV | -0.8 | -2.3 | hypothetical protein (NCBI) | compare |
| b4317 | fimD | -0.8 | -7.9 | outer membrane usher protein, type 1 fimbrial synthesis (NCBI) | compare |
| b0746 | valZ | -0.8 | -2.1 | tRNA-Val (NCBI) | compare |
| b1575 | dicB | -0.8 | -1.0 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b0741 | pal | -0.8 | -2.5 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b4314 | fimA | -0.8 | -5.4 | major type 1 subunit fimbrin (pilin) (NCBI) | compare |
| b1628 | rsxB | -0.8 | -2.2 | electron transport complex protein RnfB (NCBI) | compare |
| b0767 | ybhE | -0.8 | -3.1 | 6-phosphogluconolactonase (NCBI) | compare |
| b3426 | glpD | -0.8 | -2.4 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b4481 | rffT | -0.8 | -3.8 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b3237 | argR | -0.8 | -3.2 | arginine repressor (NCBI) | compare |
| b0564 | appY | -0.8 | -0.6 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3807 | cyaY | -0.8 | -4.7 | frataxin-like protein (NCBI) | compare |
| b3791 | rffA | -0.8 | -4.0 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4179 | vacB | -0.8 | -4.2 | putative enzyme (VIMSS) | compare |
| b4634 | ylcF | -0.8 | -2.0 | no description | compare |
| b3180 | yhbY | -0.8 | -2.7 | predicted RNA-binding protein (NCBI) | compare |
| b3794 | rffM | -0.8 | -4.1 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b0881 | clpS | -0.8 | -1.4 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b4312 | fimB | -0.8 | -5.3 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b0605 | ahpC | -0.8 | -2.2 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b2569 | lepA | -0.8 | -3.1 | GTP-binding protein LepA (NCBI) | compare |
| b3239 | yhcO | -0.7 | -1.7 | predicted barnase inhibitor (NCBI) | compare |
| b0523 | purE | -0.7 | -1.9 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b1984 | asnW | -0.7 | -0.8 | tRNA-Asn (NCBI) | compare |
| b0405 | queA | -0.7 | -4.2 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b1540 | ydfH | -0.7 | -0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1355 | b1355 | -0.7 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b3232 | yhcM | -0.7 | -5.5 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b0051 | ksgA | -0.7 | -2.8 | dimethyladenosine transferase (NCBI) | compare |
| b2501 | ppk | -0.7 | -4.3 | polyphosphate kinase (NCBI) | compare |
| b2576 | srmB | -0.7 | -2.2 | ATP-dependent RNA helicase (NCBI) | compare |
| b3871 | bipA | -0.7 | -5.3 | GTP-binding protein (NCBI) | compare |
| b1074 | flgC | -0.7 | -1.8 | flagellar basal-body rod protein C (NCBI) | compare |
| b0739 | tolA | -0.7 | -2.1 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1349 | recT | -0.7 | -3.0 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b0052 | pdxA | -0.7 | -4.5 | 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) | compare |
| b4011 | yjaA | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b1686 | ydiI | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b2673 | nrdH | -0.7 | -2.6 | glutaredoxin-like protein (NCBI) | compare |
| b4319 | fimG | -0.7 | -4.2 | minor component of type 1 fimbriae (NCBI) | compare |
| b1269 | rluB | -0.7 | -2.6 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b0738 | tolR | -0.7 | -1.9 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1562 | hokD | -0.7 | -1.6 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b3101 | yqjF | -0.7 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1418 | cybB | -0.7 | -1.5 | cytochrome b(561) (VIMSS) | compare |
| b1569 | dicC | -0.7 | -2.1 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b3790 | rffC | -0.7 | -3.2 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3389 | aroB | -0.7 | -4.6 | 3-dehydroquinate synthase (NCBI) | compare |
| b0191 | yaeJ | -0.7 | -3.0 | hypothetical protein (NCBI) | compare |
| b4005 | purD | -0.7 | -4.5 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b1855 | lpxM | -0.6 | -2.2 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b3792 | wzxE | -0.6 | -3.9 | O-antigen translocase (NCBI) | compare |
| b3839 | tatC | -0.6 | -3.6 | TatABCE protein translocation system subunit (NCBI) | compare |
| b1822 | rrmA | -0.6 | -2.3 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b4582 | yoeA | -0.6 | -1.6 | no description | compare |
| b1642 | slyA | -0.6 | -1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3787 | rffD | -0.6 | -4.6 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b4409 | blr | -0.6 | -3.1 | beta-lactam resistance membrane protein (NCBI) | compare |
| b4453 | ldrD | -0.6 | -1.2 | toxic polypeptide, small (NCBI) | compare |
| b1090 | plsX | -0.6 | -2.3 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b3281 | aroE | -0.6 | -5.2 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b2050 | wcaI | -0.6 | -2.4 | predicted glycosyl transferase (NCBI) | compare |
| b1121 | ycfZ | -0.6 | -1.1 | predicted inner membrane protein (NCBI) | compare |
| b3425 | glpE | -0.6 | -3.0 | thiosulfate sulfurtransferase (NCBI) | compare |
| b4006 | purH | -0.6 | -4.7 | bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) | compare |
| b4178 | yjeB | -0.6 | -3.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1104 | ycfL | -0.6 | -1.6 | hypothetical protein (NCBI) | compare |
| b1128 | ycfD | -0.6 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b3259 | prmA | -0.6 | -1.8 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b1084 | rne | -0.6 | -2.8 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b2683 | ygaH | -0.6 | -2.1 | predicted inner membrane protein (NCBI) | compare |
| b0707 | ybgA | -0.6 | -1.5 | hypothetical protein (NCBI) | compare |
| b3225 | nanA | -0.6 | -3.5 | N-acetylneuraminate lyase (NCBI) | compare |
| b2500 | purN | -0.6 | -2.5 | phosphoribosylglycinamide formyltransferase (NCBI) | compare |
| b0437 | clpP | -0.6 | -3.3 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1270 | btuR | -0.6 | -2.8 | cob(I)yrinic acid a,c-diamide adenosyltransferase (NCBI) | compare |
| b1144 | ymfJ | -0.6 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4552 | yrhC | -0.6 | -0.3 | no description | compare |
| b0247 | ykfG | -0.6 | -0.9 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1559 | b1559 | -0.6 | -3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1063 | yceB | -0.6 | -2.1 | predicted lipoprotein (NCBI) | compare |
| b0161 | degP | -0.6 | -3.4 | serine endoprotease (protease Do), membrane-associated (NCBI) | compare |
| b3416 | malQ | -0.6 | -4.8 | 4-alpha-glucanotransferase (amylomaltase) (NCBI) | compare |
| b2446 | yffO | -0.6 | -1.4 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2419 | yfeK | -0.6 | -0.9 | hypothetical protein (NCBI) | compare |
| b0216 | aspV | -0.6 | -3.2 | tRNA-Asp (NCBI) | compare |
| b2356 | yfdM | -0.6 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0624 | crcB | -0.6 | -1.9 | camphor resistance protein CrcB (NCBI) | compare |
| b0438 | clpX | -0.6 | -3.3 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3741 | gidA | -0.6 | -1.9 | glucose-inhibited division protein A (NCBI) | compare |
| b4545 | ypdJ | -0.6 | -1.2 | no description | compare |
| b1279 | yciS | -0.6 | -0.8 | conserved inner membrane protein (NCBI) | compare |
| b1693 | aroD | -0.6 | -2.9 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b2410 | yfeH | -0.6 | -2.0 | predicted inner membrane protein (NCBI) | compare |
| b0125 | hpt | -0.6 | -2.8 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b1231 | tyrT | -0.6 | -0.7 | tRNA-Tyr (NCBI) | compare |
| b1989 | asnV | -0.6 | -1.3 | tRNA-Asn (NCBI) | compare |
| b0338 | cynR | -0.6 | -2.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2947 | gshB | -0.6 | -1.6 | glutathione synthetase (NCBI) | compare |
| b2954 | yggV | -0.6 | -2.4 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b4269 | yjgB | -0.6 | -2.8 | putative oxidoreductase (VIMSS) | compare |
| b0364 | yaiS | -0.6 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2003 | yeeT | -0.6 | -2.0 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b2499 | purM | -0.6 | -2.8 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b0004 | thrC | -0.6 | -3.5 | threonine synthase (NCBI) | compare |
| b1848 | yebG | -0.6 | -0.9 | conserved protein regulated by LexA (NCBI) | compare |
| b2349 | intS | -0.6 | -2.3 | CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) | compare |
| b1362 | rzpR | -0.6 | -1.2 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2320 | pdxB | -0.6 | -3.6 | erythronate-4-phosphate dehydrogenase (NCBI) | compare |
| b0059 | hepA | -0.6 | -4.6 | ATP-dependent helicase HepA (NCBI) | compare |
| b1798 | yeaS | -0.6 | -3.1 | neutral amino-acid efflux system (NCBI) | compare |
| b2784 | relA | -0.6 | -3.4 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b0632 | dacA | -0.5 | -3.7 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b2476 | purC | -0.5 | -1.6 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b2688 | gshA | -0.5 | -3.2 | glutamate--cysteine ligase (NCBI) | compare |
| b4436 | ryeC | -0.5 | -0.6 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3863 | polA | -0.5 | -0.5 | DNA polymerase I (NCBI) | compare |
| b1632 | rsxE | -0.5 | -3.5 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4627 | ykfL | -0.5 | -1.5 | no description | compare |
| b2214 | yojL | -0.5 | -3.0 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b2689 | yqaA | -0.5 | -1.8 | conserved inner membrane protein (NCBI) | compare |
| b3497 | yhiQ | -0.5 | -2.8 | predicted SAM-dependent methyltransferase (NCBI) | compare |
| b4402 | yjjY | -0.5 | -0.6 | hypothetical protein (NCBI) | compare |
| b1443 | ydcV | -0.5 | -1.3 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b4589 | ylcI | -0.5 | -1.0 | hypothetical protein (RefSeq) | compare |
| b2830 | nudH | -0.5 | -0.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0740 | tolB | -0.5 | -2.1 | translocation protein TolB precursor (NCBI) | compare |
| b0418 | pgpA | -0.5 | -3.0 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b1387 | maoC | -0.5 | -2.9 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b2350 | yfdG | -0.5 | -2.9 | CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) (NCBI) | compare |
| b2794 | yqcD | -0.5 | -2.7 | hypothetical protein (NCBI) | compare |
| b4503 | yafF | -0.5 | -0.5 | no description | compare |
| b1399 | paaX | -0.5 | -1.3 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b3149 | yraO | -0.5 | -2.7 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b0522 | purK | -0.5 | -3.4 | phosphoribosylaminoimidazole carboxylase (NCBI) | compare |
| b1542 | ydfI | -0.5 | -1.3 | predicted mannonate dehydrogenase (NCBI) | compare |
| b0977 | hyaF | -0.5 | -2.3 | protein involved in nickel incorporation into hydrogenase-1 proteins (NCBI) | compare |