Experiment set54IT089 for Escherichia coli BW25113

Compare to:

mariner vector transformation; liquid outgrowth assay

Genes with specific phenotypes:

  gene name fitness t score description  
b1422 ydcI -5.8 -8.4 putative transcriptional regulator LYSR-type (VIMSS) compare
b0441 ppiD -5.2 -15.4 peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) compare
b2952 yggT -4.9 -7.8 predicted inner membrane protein (NCBI) compare
b2101 yegW -4.8 -6.5 predicted DNA-binding transcriptional regulator (NCBI) compare
b0418 pgpA -4.5 -5.8 phosphatidylglycerophosphatase A (NCBI) compare
b0970 yccA -4.4 -6.0 inner membrane protein (NCBI) compare
b3466 yhhL -4.3 -6.4 conserved inner membrane protein (NCBI) compare
b3932 hslV -4.3 -11.6 ATP-dependent protease peptidase subunit (NCBI) compare
b3931 hslU -4.0 -16.0 ATP-dependent protease ATP-binding subunit (NCBI) compare
b3423 glpR -3.9 -10.3 DNA-binding transcriptional repressor (NCBI) compare
b3037 ygiB -3.8 -5.9 conserved outer membrane protein (RefSeq) compare
b3038 ygiC -3.7 -9.5 predicted enzyme (NCBI) compare
b4241 treR -3.5 -11.8 trehalose repressor (NCBI) compare
b3752 rbsK -2.9 -10.4 ribokinase (NCBI) compare
b3403 pck -2.9 -12.3 phosphoenolpyruvate carboxykinase (NCBI) compare
b2037 rfbX -2.9 -9.9 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b3891 fdhE -2.5 -8.1 formate dehydrogenase accessory protein FdhE (NCBI) compare
b3884 yihW -2.5 -6.5 putative DEOR-type transcriptional regulator (VIMSS) compare
b3601 mtlR -2.4 -6.1 DNA-binding repressor (NCBI) compare
b1320 ycjW -2.4 -7.2 predicted DNA-binding transcriptional regulator (NCBI) compare
b3424 glpG -2.1 -6.9 predicted intramembrane serine protease (NCBI) compare
b0661 miaB -1.9 -8.8 isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) compare
b2844 yqeF -1.9 -6.5 putative acyltransferase (VIMSS) compare
b3289 rsmB -1.9 -9.3 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) compare
b3497 yhiQ -1.8 -6.2 predicted SAM-dependent methyltransferase (NCBI) compare
b3438 gntR -1.7 -5.4 DNA-binding transcriptional repressor (NCBI) compare
b2039 rfbA -1.7 -9.7 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b2796 sdaC -1.7 -8.3 predicted serine transporter (NCBI) compare
b1878 flhE -1.7 -5.3 hypothetical protein (NCBI) compare
b2714 ascG -1.6 -5.2 DNA-binding transcriptional repressor (NCBI) compare
b3673 emrD -1.5 -6.7 2-module integral membrane pump; multidrug resistance (VIMSS) compare
b1632 rsxE -1.4 -5.3 NADH-ubiquinone oxidoreductase (NCBI) compare
b2260 menE -1.4 -5.7 O-succinylbenzoic acid--CoA ligase (NCBI) compare
b0382 yaiB -1.3 -5.1 hypothetical protein (NCBI) compare
b3529 yhjK -1.3 -7.9 predicted diguanylate cyclase (RefSeq) compare
b4390 nadR -1.2 -5.6 probable nadAB transcriptional regulator (VIMSS) compare
b4348 hsdS -1.1 -6.3 specificity determinant for hsdM and hsdR (NCBI) compare
b3401 yrfI +1.0 5.1 orf, hypothetical protein (VIMSS) compare
b0393 rdgC +1.1 5.9 recombination associated protein (NCBI) compare
b3258 panF +1.2 7.2 sodium/pantothenate symporter (VIMSS) compare
b0473 htpG +1.2 7.1 heat shock protein 90 (NCBI) compare
b2522 sseB +1.2 7.6 enhanced serine sensitivity (VIMSS) compare
b3349 slyD +1.3 5.6 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) compare
b3095 yqjA +1.4 5.5 conserved inner membrane protein (NCBI) compare
b1840 yebZ +1.4 5.7 predicted inner membrane protein (NCBI) compare
b0458 ylaC +1.4 6.4 orf, hypothetical protein (VIMSS) compare
b0065 yabI +1.5 5.3 conserved inner membrane protein (NCBI) compare
b3257 yhdT +1.5 6.0 conserved inner membrane protein (NCBI) compare
b2149 mglA +1.5 9.6 fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b3232 yhcM +1.6 9.2 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare
b1162 ycgE +1.6 5.8 predicted DNA-binding transcriptional regulator (NCBI) compare
b3190 yrbA +1.6 5.2 orf, hypothetical protein (VIMSS) compare
b2181 yejG +1.7 5.9 hypothetical protein (NCBI) compare
b2148 mglC +1.7 10.2 beta-methylgalactoside transporter inner membrane component (NCBI) compare
b2150 mglB +1.8 9.2 methyl-galactoside transporter subunit (NCBI) compare
b2584 yfiQ +1.8 9.7 fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) compare
b0427 yajR +2.1 12.2 putative transport protein (VIMSS) compare
b2113 mrp +2.1 11.2 putative ATPase (VIMSS) compare
b2218 rcsC +2.2 12.9 hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) compare
b1086 rluC +2.2 6.6 23S rRNA pseudouridylate synthase (NCBI) compare
b2502 ppx +2.2 8.8 exopolyphosphatase (NCBI) compare
b2946 yggJ +2.2 10.7 orf, hypothetical protein (VIMSS) compare
b3166 truB +2.3 12.3 tRNA pseudouridine synthase B (NCBI) compare
b4391 yjjK +2.3 15.1 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b3626 rfaJ +2.4 6.4 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) compare
b4371 rsmC +2.5 14.1 16S ribosomal RNA m2G1207 methyltransferase (NCBI) compare
b2216 rcsD +3.1 11.0 phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) compare
b1835 yebU +3.2 14.3 putative nucleolar proteins (VIMSS) compare


Specific phenotypes for plasmid transformation Kanamycin sulfate across organisms