| | gene | name | fitness | t score | description | |
|---|
| b1422 | ydcI | -5.8 | -8.4 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b3912 | cpxR | -5.5 | -9.9 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b0441 | ppiD | -5.2 | -15.4 | peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) | compare |
| b3094 | exuR | -4.9 | -3.4 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b4174 | hflK | -4.9 | -5.8 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2952 | yggT | -4.9 | -7.8 | predicted inner membrane protein (NCBI) | compare |
| b4175 | hflC | -4.8 | -7.3 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2101 | yegW | -4.8 | -6.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2175 | spr | -4.7 | -3.2 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b0418 | pgpA | -4.5 | -5.8 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b2741 | rpoS | -4.4 | -8.6 | RNA polymerase sigma factor (NCBI) | compare |
| b0970 | yccA | -4.4 | -6.0 | inner membrane protein (NCBI) | compare |
| b3466 | yhhL | -4.3 | -6.4 | conserved inner membrane protein (NCBI) | compare |
| b3932 | hslV | -4.3 | -11.6 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b3611 | yibN | -4.2 | -5.7 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b3931 | hslU | -4.0 | -16.0 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3423 | glpR | -3.9 | -10.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1620 | malI | -3.9 | -2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3037 | ygiB | -3.8 | -5.9 | conserved outer membrane protein (RefSeq) | compare |
| b2450 | yffS | -3.8 | -2.4 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b3038 | ygiC | -3.7 | -9.5 | predicted enzyme (NCBI) | compare |
| b4232 | fbp | -3.6 | -3.5 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b4241 | treR | -3.5 | -11.8 | trehalose repressor (NCBI) | compare |
| b0407 | yajC | -3.4 | -1.9 | preprotein translocase subunit YajC (NCBI) | compare |
| b3465 | yhhF | -3.4 | -5.9 | predicted methyltransferase (NCBI) | compare |
| b0920 | ycbC | -3.2 | -5.5 | conserved inner membrane protein (NCBI) | compare |
| b0908 | aroA | -3.1 | -4.8 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b4163 | glyV | -3.1 | -1.2 | tRNA-Gly (NCBI) | compare |
| b1179 | ycgL | -3.1 | -3.1 | conserved protein (NCBI) | compare |
| b3226 | yhcK | -3.0 | -3.9 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b1961 | dcm | -3.0 | -1.6 | DNA cytosine methylase (NCBI) | compare |
| b0462 | acrB | -3.0 | -12.4 | multidrug efflux system protein (NCBI) | compare |
| b2501 | ppk | -3.0 | -4.5 | polyphosphate kinase (NCBI) | compare |
| b2951 | yggS | -3.0 | -5.2 | predicted enzyme (NCBI) | compare |
| b0142 | folK | -2.9 | -0.8 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b1255 | yciC | -2.9 | -4.3 | hypothetical protein (NCBI) | compare |
| b3752 | rbsK | -2.9 | -10.4 | ribokinase (NCBI) | compare |
| b1575 | dicB | -2.9 | -2.1 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b3403 | pck | -2.9 | -12.3 | phosphoenolpyruvate carboxykinase (NCBI) | compare |
| b4603 | rseX | -2.9 | -0.8 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3443 | yrhA | -2.9 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2037 | rfbX | -2.9 | -9.9 | predicted polisoprenol-linked O-antigen transporter (NCBI) | compare |
| b0463 | acrA | -2.9 | -9.2 | multidrug efflux system (NCBI) | compare |
| b2314 | dedD | -2.8 | -3.9 | putative lipoprotein (VIMSS) | compare |
| b3205 | yhbJ | -2.8 | -1.9 | hypothetical protein (NCBI) | compare |
| b1557 | cspB | -2.7 | -2.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b3790 | rffC | -2.7 | -1.8 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0676 | nagC | -2.6 | -6.1 | DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI) | compare |
| b2329 | aroC | -2.6 | -2.5 | chorismate synthase (NCBI) | compare |
| b3891 | fdhE | -2.5 | -8.1 | formate dehydrogenase accessory protein FdhE (NCBI) | compare |
| b1842 | holE | -2.5 | -1.9 | DNA polymerase III, theta subunit (NCBI) | compare |
| b4699 | fnrS | -2.5 | -0.9 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b3884 | yihW | -2.5 | -6.5 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b3601 | mtlR | -2.4 | -6.1 | DNA-binding repressor (NCBI) | compare |
| b1618 | uidR | -2.4 | -3.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3911 | cpxA | -2.4 | -6.5 | two-component sensor protein (NCBI) | compare |
| b1323 | tyrR | -2.4 | -4.2 | DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) | compare |
| b1320 | ycjW | -2.4 | -7.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0145 | dksA | -2.4 | -2.3 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2618 | b2618 | -2.4 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b0113 | pdhR | -2.3 | -4.6 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b4041 | plsB | -2.3 | -1.5 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2362 | yfdS | -2.2 | -4.5 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b4529 | ydbJ | -2.2 | -0.8 | hypothetical protein (NCBI) | compare |
| b3849 | trkH | -2.2 | -5.0 | potassium transporter (NCBI) | compare |
| b4647 | mokA | -2.2 | -1.1 | no description | compare |
| b1357 | ydaS | -2.1 | -1.8 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3753 | rbsR | -2.1 | -10.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2642 | yfjW | -2.1 | -1.3 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1025 | ycdT | -2.1 | -1.4 | predicted diguanylate cyclase (NCBI) | compare |
| b3424 | glpG | -2.1 | -6.9 | predicted intramembrane serine protease (NCBI) | compare |
| b1847 | yebF | -2.1 | -1.0 | predicted protein (RefSeq) | compare |
| b1175 | minD | -2.1 | -2.7 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b1090 | plsX | -2.0 | -3.1 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b1482 | osmC | -2.0 | -1.8 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b4025 | pgi | -2.0 | -5.3 | glucose-6-phosphate isomerase (NCBI) | compare |
| b1304 | pspA | -1.9 | -2.2 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b0661 | miaB | -1.9 | -8.8 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3404 | envZ | -1.9 | -7.6 | osmolarity sensor protein (NCBI) | compare |
| b0436 | tig | -1.9 | -5.4 | trigger factor (NCBI) | compare |
| b0460 | hha | -1.9 | -4.7 | modulator of gene expression, with H-NS (NCBI) | compare |
| b2844 | yqeF | -1.9 | -6.5 | putative acyltransferase (VIMSS) | compare |
| b0912 | ihfB | -1.9 | -1.6 | integration host factor subunit beta (NCBI) | compare |
| b3289 | rsmB | -1.9 | -9.3 | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | compare |
| b3292 | zntR | -1.8 | -3.9 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b2014 | yeeF | -1.8 | -4.8 | putative amino acid/amine transport protein (VIMSS) | compare |
| b1634 | tppB | -1.8 | -3.6 | putative tripeptide transporter permease (NCBI) | compare |
| b3032 | cpdA | -1.8 | -4.8 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b3497 | yhiQ | -1.8 | -6.2 | predicted SAM-dependent methyltransferase (NCBI) | compare |
| b3438 | gntR | -1.7 | -5.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1630 | rsxD | -1.7 | -4.3 | electron transport complex protein RnfD (NCBI) | compare |
| b1176 | minC | -1.7 | -1.1 | septum formation inhibitor (NCBI) | compare |
| b2039 | rfbA | -1.7 | -9.7 | glucose-1-phosphate thymidylyltransferase (NCBI) | compare |
| b2796 | sdaC | -1.7 | -8.3 | predicted serine transporter (NCBI) | compare |
| b1878 | flhE | -1.7 | -5.3 | hypothetical protein (NCBI) | compare |
| b4140 | b4140 | -1.7 | -4.2 | orf, hypothetical protein (VIMSS) | compare |
| b1628 | rsxB | -1.7 | -2.0 | electron transport complex protein RnfB (NCBI) | compare |
| b2910 | zapA | -1.7 | -2.3 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b4451 | ryhB | -1.7 | -1.7 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1524 | yneH | -1.7 | -0.9 | predicted glutaminase (NCBI) | compare |
| b1627 | rsxA | -1.7 | -2.0 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1095 | fabF | -1.7 | -3.4 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2340 | sixA | -1.7 | -2.2 | phosphohistidine phosphatase (NCBI) | compare |
| b0240 | crl | -1.6 | -5.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0934 | ycbM | -1.6 | -1.9 | putative transport system permease protein (VIMSS) | compare |
| b2714 | ascG | -1.6 | -5.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2435 | amiA | -1.6 | -4.0 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b0791 | ybhQ | -1.6 | -2.3 | predicted inner membrane protein (NCBI) | compare |
| b4035 | malK | -1.6 | -3.2 | fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein (NCBI) | compare |
| b4450 | arcZ | -1.5 | -3.0 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3673 | emrD | -1.5 | -6.7 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b0406 | tgt | -1.5 | -3.2 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1685 | ydiH | -1.5 | -1.2 | predicted protein (RefSeq) | compare |
| b3229 | sspA | -1.5 | -1.0 | stringent starvation protein A (NCBI) | compare |
| b2513 | yfgM | -1.5 | -2.3 | hypothetical protein (NCBI) | compare |
| b4519 | icdC | -1.5 | -2.6 | no description | compare |
| b2934 | cmtB | -1.5 | -0.8 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1523 | yneG | -1.5 | -1.6 | hypothetical protein (NCBI) | compare |
| b1865 | nudB | -1.5 | -0.8 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1503 | ydeR | -1.5 | -2.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1550 | b1550 | -1.5 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1111 | ycfQ | -1.5 | -3.2 | orf, hypothetical protein (VIMSS) | compare |
| b0471 | ybaB | -1.4 | -1.9 | hypothetical protein (NCBI) | compare |
| b3075 | ebgR | -1.4 | -3.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1632 | rsxE | -1.4 | -5.3 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b1642 | slyA | -1.4 | -1.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4535 | yniD | -1.4 | -0.8 | predicted protein (RefSeq) | compare |
| b0926 | ycbK | -1.4 | -2.2 | hypothetical protein (NCBI) | compare |
| b2912 | ygfA | -1.4 | -1.0 | putative ligase (VIMSS) | compare |
| b2260 | menE | -1.4 | -5.7 | O-succinylbenzoic acid--CoA ligase (NCBI) | compare |
| b1187 | fadR | -1.4 | -2.8 | fatty acid metabolism regulator (NCBI) | compare |
| b1361 | ydaW | -1.4 | -0.4 | orf, hypothetical protein (VIMSS) | compare |
| b2317 | dedA | -1.4 | -2.9 | conserved inner membrane protein (NCBI) | compare |
| b4217 | ytfK | -1.4 | -3.7 | orf, hypothetical protein (VIMSS) | compare |
| b0729 | sucD | -1.4 | -1.3 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b4585 | sroB | -1.4 | -1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b3727 | pstC | -1.4 | -2.6 | phosphate transporter subunit (NCBI) | compare |
| b0728 | sucC | -1.4 | -2.5 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b2214 | yojL | -1.4 | -3.1 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b2783 | chpR | -1.3 | -1.7 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b1693 | aroD | -1.3 | -2.3 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b1739 | osmE | -1.3 | -1.9 | DNA-binding transcriptional activator (NCBI) | compare |
| b0767 | ybhE | -1.3 | -1.6 | 6-phosphogluconolactonase (NCBI) | compare |
| b1048 | mdoG | -1.3 | -3.7 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b3484 | yhhI | -1.3 | -2.6 | predicted transposase (NCBI) | compare |
| b3791 | rffA | -1.3 | -0.9 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b1556 | b1556 | -1.3 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0542 | renD | -1.3 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0382 | yaiB | -1.3 | -5.1 | hypothetical protein (NCBI) | compare |
| b2964 | nupG | -1.3 | -4.8 | transport of nucleosides, permease protein (VIMSS) | compare |
| b3381 | yhfX | -1.3 | -4.9 | predicted amino acid racemase (NCBI) | compare |
| b1518 | lsrG | -1.3 | -0.8 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b3529 | yhjK | -1.3 | -7.9 | predicted diguanylate cyclase (RefSeq) | compare |
| b4594 | ymgJ | -1.3 | -1.9 | hypothetical protein (RefSeq) | compare |
| b1827 | kdgR | -1.3 | -1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3933 | ftsN | -1.2 | -5.2 | essential cell division protein (NCBI) | compare |
| b3383 | yhfZ | -1.2 | -3.8 | hypothetical protein (NCBI) | compare |
| b2264 | menD | -1.2 | -4.5 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase (NCBI) | compare |
| b3017 | sufI | -1.2 | -5.7 | repressor protein for FtsI (NCBI) | compare |
| b3930 | menA | -1.2 | -6.8 | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | compare |
| b4184 | yjfL | -1.2 | -3.6 | conserved inner membrane protein (NCBI) | compare |
| b0921 | smtA | -1.2 | -4.0 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b4390 | nadR | -1.2 | -5.6 | probable nadAB transcriptional regulator (VIMSS) | compare |
| b2643 | yfjX | -1.2 | -2.4 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b1954 | dsrA | -1.2 | -1.8 | regulatory antisense RNA (NCBI) | compare |
| b0617 | citD | -1.2 | -2.0 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2376 | ypdI | -1.2 | -3.1 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b2261 | menC | -1.2 | -2.8 | O-succinylbenzoate synthase (NCBI) | compare |
| b2085 | b2085 | -1.2 | -3.3 | orf, hypothetical protein (VIMSS) | compare |
| b2295 | yfbV | -1.2 | -2.8 | hypothetical protein (NCBI) | compare |
| b4701 | sokX | -1.2 | -0.6 | sok-related sRNA, function unknown (RefSeq) | compare |
| b4513 | kdpF | -1.2 | -1.1 | potassium ion accessory transporter subunit (NCBI) | compare |
| b0197 | metQ | -1.2 | -4.3 | DL-methionine transporter subunit (NCBI) | compare |
| b2510 | b2510 | -1.2 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2540 | hcaC | -1.2 | -2.6 | 3-phenylpropionate dioxygenase, predicted ferredoxin subunit (NCBI) | compare |
| b2188 | yejM | -1.2 | -4.3 | predicted hydrolase, inner membrane (NCBI) | compare |
| b3146 | yraL | -1.1 | -4.5 | predicted methyltransferase (NCBI) | compare |
| b3890 | yiiF | -1.1 | -2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1953 | b1953 | -1.1 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1753 | ynjA | -1.1 | -1.6 | hypothetical protein (NCBI) | compare |
| b4416 | rybA | -1.1 | -0.8 | unknown RNA (NCBI) | compare |
| b1007 | b1007 | -1.1 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1558 | cspF | -1.1 | -1.5 | Qin prophage; cold shock protein (NCBI) | compare |
| b2262 | menB | -1.1 | -1.7 | naphthoate synthase (NCBI) | compare |
| b1689 | b1689 | -1.1 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3259 | prmA | -1.1 | -2.1 | ribosomal protein L11 methyltransferase (NCBI) | compare |
| b0730 | mngR | -1.1 | -1.3 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b4348 | hsdS | -1.1 | -6.3 | specificity determinant for hsdM and hsdR (NCBI) | compare |
| b1832 | yebR | -1.1 | -2.9 | free methionine-(R)-sulfoxide reductase (RefSeq) | compare |
| b1490 | yddV | -1.1 | -3.8 | predicted diguanylate cyclase (RefSeq) | compare |
| b3131 | agaR | -1.1 | -1.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4545 | ypdJ | -1.1 | -1.5 | no description | compare |
| b3816 | corA | -1.1 | -4.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b3663 | yicN | -1.1 | -3.3 | orf, hypothetical protein (VIMSS) | compare |
| b1249 | cls | -1.1 | -3.8 | cardiolipin synthetase (NCBI) | compare |
| b4557 | yidD | -1.1 | -1.7 | hypothetical protein (NCBI) | compare |
| b4589 | ylcI | -1.1 | -1.4 | hypothetical protein (RefSeq) | compare |
| b2896 | ygfX | -1.1 | -4.1 | hypothetical protein (NCBI) | compare |
| b1629 | rsxC | -1.1 | -3.3 | electron transport complex protein RnfC (NCBI) | compare |
| b1926 | fliT | -1.0 | -1.4 | predicted chaperone (NCBI) | compare |