Experiment set54IT087 for Escherichia coli BW25113

Compare to:

mariner vector transformation; liquid outgrowth assay

Genes with specific phenotypes:

  gene name fitness t score description  
b0441 ppiD -5.6 -10.8 peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) compare
b3038 ygiC -5.1 -10.7 predicted enzyme (NCBI) compare
b2952 yggT -4.4 -6.2 predicted inner membrane protein (NCBI) compare
b3932 hslV -4.2 -11.5 ATP-dependent protease peptidase subunit (NCBI) compare
b3931 hslU -4.1 -13.8 ATP-dependent protease ATP-binding subunit (NCBI) compare
b4241 treR -3.8 -11.4 trehalose repressor (NCBI) compare
b2844 yqeF -3.5 -8.7 putative acyltransferase (VIMSS) compare
b3423 glpR -3.2 -7.6 DNA-binding transcriptional repressor (NCBI) compare
b2796 sdaC -3.1 -9.1 predicted serine transporter (NCBI) compare
b3891 fdhE -2.7 -6.5 formate dehydrogenase accessory protein FdhE (NCBI) compare
b3497 yhiQ -2.5 -7.1 predicted SAM-dependent methyltransferase (NCBI) compare
b3601 mtlR -2.3 -5.6 DNA-binding repressor (NCBI) compare
b2037 rfbX -2.3 -6.3 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b3146 yraL -2.2 -5.4 predicted methyltransferase (NCBI) compare
b3752 rbsK -2.1 -8.7 ribokinase (NCBI) compare
b2156 lysP -2.0 -7.6 lysine transporter (NCBI) compare
b3403 pck -1.9 -7.8 phosphoenolpyruvate carboxykinase (NCBI) compare
b3289 rsmB -1.9 -8.7 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) compare
b2964 nupG -1.9 -7.9 transport of nucleosides, permease protein (VIMSS) compare
b3424 glpG -1.8 -6.3 predicted intramembrane serine protease (NCBI) compare
b0932 pepN -1.7 -6.1 aminopeptidase N (NCBI) compare
b2260 menE -1.6 -6.9 O-succinylbenzoic acid--CoA ligase (NCBI) compare
b4349 hsdM -1.6 -5.7 DNA methylase M (NCBI) compare
b4390 nadR -1.5 -6.2 probable nadAB transcriptional regulator (VIMSS) compare
b0661 miaB -1.4 -5.1 isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) compare
b2039 rfbA -1.2 -6.3 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b4348 hsdS -1.1 -6.2 specificity determinant for hsdM and hsdR (NCBI) compare
b4138 dcuA -1.1 -6.0 C4-dicarboxylate antiporter (NCBI) compare
b0779 uvrB +1.1 5.2 excinuclease ABC subunit B (NCBI) compare
b2522 sseB +1.2 7.1 enhanced serine sensitivity (VIMSS) compare
b3591 selA +1.2 7.1 selenocysteine synthase (NCBI) compare
b3416 malQ +1.2 6.9 4-alpha-glucanotransferase (amylomaltase) (NCBI) compare
b3590 selB +1.3 7.4 selenocysteinyl-tRNA-specific translation factor (NCBI) compare
b0393 rdgC +1.3 6.5 recombination associated protein (NCBI) compare
b3258 panF +1.4 6.9 sodium/pantothenate symporter (VIMSS) compare
b2480 bcp +1.5 5.1 thioredoxin-dependent thiol peroxidase (NCBI) compare
b0458 ylaC +1.5 5.8 orf, hypothetical protein (VIMSS) compare
b2812 ygdL +1.6 5.8 hypothetical protein (NCBI) compare
b3425 glpE +1.6 6.4 thiosulfate sulfurtransferase (NCBI) compare
b2181 yejG +1.6 6.2 hypothetical protein (NCBI) compare
b2149 mglA +1.7 10.0 fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b1086 rluC +1.9 5.7 23S rRNA pseudouridylate synthase (NCBI) compare
b1840 yebZ +1.9 5.6 predicted inner membrane protein (NCBI) compare
b2148 mglC +2.0 9.8 beta-methylgalactoside transporter inner membrane component (NCBI) compare
b3232 yhcM +2.0 10.3 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare
b3807 cyaY +2.1 9.6 frataxin-like protein (NCBI) compare
b2584 yfiQ +2.1 10.5 fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) compare
b3626 rfaJ +2.2 6.7 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) compare
b2150 mglB +2.3 7.8 methyl-galactoside transporter subunit (NCBI) compare
b4371 rsmC +2.3 13.8 16S ribosomal RNA m2G1207 methyltransferase (NCBI) compare
b2218 rcsC +2.4 11.8 hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) compare
b2502 ppx +2.4 9.3 exopolyphosphatase (NCBI) compare
b2113 mrp +2.4 9.6 putative ATPase (VIMSS) compare
b4391 yjjK +2.5 11.9 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b0427 yajR +2.9 14.5 putative transport protein (VIMSS) compare
b3166 truB +3.0 10.6 tRNA pseudouridine synthase B (NCBI) compare
b2946 yggJ +3.0 8.9 orf, hypothetical protein (VIMSS) compare
b1835 yebU +3.7 10.9 putative nucleolar proteins (VIMSS) compare
b2216 rcsD +3.9 11.4 phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) compare


Specific phenotypes for plasmid transformation Kanamycin sulfate across organisms