Experiment set54IT086 for Escherichia coli BW25113

Compare to:

vcDART vector transformation; liquid outgrowth assay

Genes with specific phenotypes:

  gene name fitness t score description  
b1422 ydcI -4.8 -7.3 putative transcriptional regulator LYSR-type (VIMSS) compare
b0441 ppiD -3.9 -11.1 peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) compare
b2101 yegW -3.7 -5.1 predicted DNA-binding transcriptional regulator (NCBI) compare
b3932 hslV -3.1 -9.7 ATP-dependent protease peptidase subunit (NCBI) compare
b3403 pck -2.9 -9.4 phosphoenolpyruvate carboxykinase (NCBI) compare
b2037 rfbX -2.7 -5.7 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b3752 rbsK -2.3 -7.0 ribokinase (NCBI) compare
b3931 hslU -2.2 -7.4 ATP-dependent protease ATP-binding subunit (NCBI) compare
b4241 treR -2.2 -7.1 trehalose repressor (NCBI) compare
b2844 yqeF -2.1 -5.2 putative acyltransferase (VIMSS) compare
b0661 miaB -1.9 -6.9 isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) compare
b3529 yhjK -1.8 -8.3 predicted diguanylate cyclase (RefSeq) compare
b2039 rfbA -1.6 -8.0 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b3289 rsmB -1.6 -5.2 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) compare
b3347 fkpA -1.3 -5.5 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) compare
b4170 mutL +1.1 5.3 DNA mismatch repair protein (NCBI) compare
b2584 yfiQ +1.2 6.7 fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) compare
b3232 yhcM +1.3 5.3 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare
b2946 yggJ +1.6 5.4 orf, hypothetical protein (VIMSS) compare
b1329 b1329 +1.6 5.1 putative transport periplasmic protein (VIMSS) compare
b2218 rcsC +1.6 7.8 hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) compare
b2181 yejG +1.8 6.5 hypothetical protein (NCBI) compare
b1835 yebU +2.6 13.3 putative nucleolar proteins (VIMSS) compare
b2216 rcsD +2.9 9.4 phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) compare
b2908 pepP +3.0 6.3 proline aminopeptidase P II (NCBI) compare
b2436 hemF +3.7 22.2 coproporphyrinogen III oxidase (NCBI) compare
b2819 recD +3.7 20.4 exonuclease V (RecBCD complex), alpha chain (NCBI) compare
b2113 mrp +4.0 17.2 putative ATPase (VIMSS) compare
b0427 yajR +4.2 30.5 putative transport protein (VIMSS) compare
b3626 rfaJ +4.3 10.6 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) compare


Specific phenotypes for plasmid transformation Kanamycin sulfate across organisms