| | gene | name | fitness | t score | description | |
|---|
| b3912 | cpxR | -5.0 | -3.5 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b2952 | yggT | -4.9 | -4.8 | predicted inner membrane protein (NCBI) | compare |
| b1422 | ydcI | -4.8 | -7.3 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b0970 | yccA | -4.7 | -3.2 | inner membrane protein (NCBI) | compare |
| b3107 | yhaL | -4.6 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4595 | yciY | -4.5 | -2.0 | hypothetical protein (RefSeq) | compare |
| b0998 | torD | -4.4 | -1.3 | chaperone protein TorD (NCBI) | compare |
| b4175 | hflC | -4.1 | -2.8 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b0441 | ppiD | -3.9 | -11.1 | peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) | compare |
| b1476 | fdnI | -3.8 | -1.2 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b4538 | yoeF | -3.7 | -1.6 | hypothetical protein (RefSeq) | compare |
| b2101 | yegW | -3.7 | -5.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4174 | hflK | -3.7 | -3.6 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b4699 | fnrS | -3.6 | -1.1 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1758 | b1758 | -3.6 | -1.1 | putative cytochrome oxidase (VIMSS) | compare |
| b3198 | kdsC | -3.5 | -2.4 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3094 | exuR | -3.5 | -2.4 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b2953 | yggU | -3.3 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3932 | hslV | -3.1 | -9.7 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b0462 | acrB | -3.1 | -10.7 | multidrug efflux system protein (NCBI) | compare |
| b4431 | rprA | -3.0 | -1.6 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b2904 | gcvH | -2.9 | -1.8 | glycine cleavage system protein H (NCBI) | compare |
| b2951 | yggS | -2.9 | -4.0 | predicted enzyme (NCBI) | compare |
| b3465 | yhhF | -2.9 | -3.5 | predicted methyltransferase (NCBI) | compare |
| b2698 | recX | -2.9 | -2.1 | RecA regulator RecX (NCBI) | compare |
| b3977 | tyrU | -2.9 | -0.9 | tRNA-Tyr (NCBI) | compare |
| b0912 | ihfB | -2.9 | -2.0 | integration host factor subunit beta (NCBI) | compare |
| b3403 | pck | -2.9 | -9.4 | phosphoenolpyruvate carboxykinase (NCBI) | compare |
| b3037 | ygiB | -2.9 | -4.3 | conserved outer membrane protein (RefSeq) | compare |
| b1175 | minD | -2.9 | -2.0 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b1954 | dsrA | -2.8 | -1.7 | regulatory antisense RNA (NCBI) | compare |
| b1634 | tppB | -2.8 | -3.9 | putative tripeptide transporter permease (NCBI) | compare |
| b2741 | rpoS | -2.8 | -5.2 | RNA polymerase sigma factor (NCBI) | compare |
| b1573 | ydfC | -2.7 | -1.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b1953 | b1953 | -2.7 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3884 | yihW | -2.7 | -4.5 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b2642 | yfjW | -2.7 | -1.4 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2037 | rfbX | -2.7 | -5.7 | predicted polisoprenol-linked O-antigen transporter (NCBI) | compare |
| b2969 | yghE | -2.6 | -2.6 | predicted secretion pathway protein, L-type protein (pseudogene) (RefSeq) | compare |
| b2579 | yfiD | -2.6 | -2.0 | pyruvate formate lyase subunit (NCBI) | compare |
| b1523 | yneG | -2.6 | -1.4 | hypothetical protein (NCBI) | compare |
| b3226 | yhcK | -2.6 | -2.5 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b0627 | tatE | -2.5 | -2.4 | twin arginine translocase protein E (NCBI) | compare |
| b1882 | cheY | -2.5 | -0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b2175 | spr | -2.4 | -2.8 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b1563 | relE | -2.4 | -1.6 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b1266 | yciV | -2.4 | -2.6 | hypothetical protein (NCBI) | compare |
| b1171 | b1171 | -2.4 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2814 | metZ | -2.4 | -0.7 | tRNA-Met (NCBI) | compare |
| b0946 | ycbW | -2.4 | -3.6 | orf, hypothetical protein (VIMSS) | compare |
| b0523 | purE | -2.4 | -3.3 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b4232 | fbp | -2.4 | -2.3 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b3466 | yhhL | -2.4 | -3.4 | conserved inner membrane protein (NCBI) | compare |
| b1588 | ynfF | -2.3 | -2.9 | oxidoreductase subunit (RefSeq) | compare |
| b2689 | yqaA | -2.3 | -2.2 | conserved inner membrane protein (NCBI) | compare |
| b1164 | ycgZ | -2.3 | -1.3 | hypothetical protein (NCBI) | compare |
| b3752 | rbsK | -2.3 | -7.0 | ribokinase (NCBI) | compare |
| b1070 | flgN | -2.3 | -1.0 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0463 | acrA | -2.3 | -5.7 | multidrug efflux system (NCBI) | compare |
| b0142 | folK | -2.3 | -0.7 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b0407 | yajC | -2.3 | -1.4 | preprotein translocase subunit YajC (NCBI) | compare |
| b0920 | ycbC | -2.3 | -3.3 | conserved inner membrane protein (NCBI) | compare |
| b0113 | pdhR | -2.2 | -3.1 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b1865 | nudB | -2.2 | -1.2 | dATP pyrophosphohydrolase (NCBI) | compare |
| b2501 | ppk | -2.2 | -1.5 | polyphosphate kinase (NCBI) | compare |
| b3931 | hslU | -2.2 | -7.4 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1090 | plsX | -2.2 | -1.5 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b4241 | treR | -2.2 | -7.1 | trehalose repressor (NCBI) | compare |
| b4451 | ryhB | -2.2 | -1.6 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1548 | nohA | -2.2 | -1.3 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b2215 | ompC | -2.1 | -3.8 | outer membrane porin protein C (NCBI) | compare |
| b0436 | tig | -2.1 | -5.2 | trigger factor (NCBI) | compare |
| b2421 | cysM | -2.1 | -2.5 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2844 | yqeF | -2.1 | -5.2 | putative acyltransferase (VIMSS) | compare |
| b3100 | yqjK | -2.0 | -2.5 | hypothetical protein (NCBI) | compare |
| b3611 | yibN | -2.0 | -3.6 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b0990 | cspG | -2.0 | -1.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0035 | caiE | -2.0 | -3.6 | possible synthesis of cofactor for carnitine racemase and dehydratase (VIMSS) | compare |
| b1540 | ydfH | -2.0 | -1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2586 | yfiM | -2.0 | -2.4 | predicted protein (RefSeq) | compare |
| b1926 | fliT | -2.0 | -1.6 | predicted chaperone (NCBI) | compare |
| b2494 | yfgC | -2.0 | -4.3 | predicted peptidase (NCBI) | compare |
| b1400 | paaY | -2.0 | -1.7 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4450 | arcZ | -2.0 | -2.1 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b2990 | hybG | -2.0 | -1.8 | hydrogenase 2 accessory protein (NCBI) | compare |
| b3383 | yhfZ | -2.0 | -4.9 | hypothetical protein (NCBI) | compare |
| b0263 | afuB | -2.0 | -2.0 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b1837 | yebW | -2.0 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1429 | tehA | -1.9 | -1.0 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b4608 | ryfC | -1.9 | -2.3 | Novel sRNA, function unknown (RefSeq) | compare |
| b3228 | sspB | -1.9 | -2.9 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b0661 | miaB | -1.9 | -6.9 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b0143 | pcnB | -1.9 | -1.8 | poly(A) polymerase I (VIMSS) | compare |
| b4551 | yheV | -1.9 | -1.5 | hypothetical protein (NCBI) | compare |
| b4413 | sokC | -1.9 | -1.0 | regulatory antisense RNA (NCBI) | compare |
| b2618 | b2618 | -1.8 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2707 | srlR | -1.8 | -3.4 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b4203 | rplI | -1.8 | -2.7 | 50S ribosomal protein L9 (NCBI) | compare |
| b0908 | aroA | -1.8 | -3.0 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b4025 | pgi | -1.8 | -5.8 | glucose-6-phosphate isomerase (NCBI) | compare |
| b2259 | pmrD | -1.8 | -0.8 | polymyxin resistance protein B (VIMSS) | compare |
| b1752 | ydjZ | -1.8 | -2.4 | conserved inner membrane protein (NCBI) | compare |
| b1524 | yneH | -1.8 | -0.8 | predicted glutaminase (NCBI) | compare |
| b3423 | glpR | -1.8 | -5.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1487 | ddpA | -1.8 | -3.4 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b1569 | dicC | -1.8 | -1.9 | Qin prophage; DNA-binding transcriptional regulator for DicB (NCBI) | compare |
| b3529 | yhjK | -1.8 | -8.3 | predicted diguanylate cyclase (RefSeq) | compare |
| b1514 | lsrC | -1.8 | -1.2 | AI2 transporter (NCBI) | compare |
| b2329 | aroC | -1.8 | -1.2 | chorismate synthase (NCBI) | compare |
| b3038 | ygiC | -1.8 | -4.1 | predicted enzyme (NCBI) | compare |
| b0418 | pgpA | -1.8 | -2.8 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b0782 | moaB | -1.8 | -1.4 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b4557 | yidD | -1.7 | -2.1 | hypothetical protein (NCBI) | compare |
| b1095 | fabF | -1.7 | -3.7 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1632 | rsxE | -1.7 | -3.3 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b0730 | mngR | -1.7 | -1.2 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b0881 | clpS | -1.7 | -1.1 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b0542 | renD | -1.7 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1480 | sra | -1.7 | -1.2 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1085 | b1085 | -1.7 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4503 | yafF | -1.7 | -0.7 | no description | compare |
| b2209 | eco | -1.7 | -1.3 | ecotin precursor (NCBI) | compare |
| b0249 | ykfF | -1.7 | -1.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2807 | ygdD | -1.7 | -2.8 | conserved inner membrane protein (NCBI) | compare |
| b2910 | zapA | -1.7 | -1.8 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b3443 | yrhA | -1.7 | -0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2673 | nrdH | -1.7 | -1.5 | glutaredoxin-like protein (NCBI) | compare |
| b2945 | endA | -1.6 | -2.9 | DNA-specific endonuclease I (NCBI) | compare |
| b1696 | ydiP | -1.6 | -1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4695 | ykgT | -1.6 | -1.3 | no description | compare |
| b1656 | sodB | -1.6 | -2.5 | superoxide dismutase, Fe (NCBI) | compare |
| b2317 | dedA | -1.6 | -3.4 | conserved inner membrane protein (NCBI) | compare |
| b3836 | b3836 | -1.6 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b2039 | rfbA | -1.6 | -8.0 | glucose-1-phosphate thymidylyltransferase (NCBI) | compare |
| b2003 | yeeT | -1.6 | -1.8 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b0082 | mraW | -1.6 | -1.9 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4246 | pyrL | -1.6 | -1.6 | pyrBI operon leader peptide (NCBI) | compare |
| b1334 | fnr | -1.6 | -1.4 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0503 | ybbB | -1.6 | -1.7 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b3781 | trxA | -1.6 | -1.9 | thioredoxin 1 (VIMSS) | compare |
| b1394 | paaG | -1.6 | -2.0 | enoyl-CoA hydratase (NCBI) | compare |
| b1742 | b1742 | -1.6 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3289 | rsmB | -1.6 | -5.2 | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | compare |
| b4585 | sroB | -1.6 | -0.9 | Novel sRNA, function unknown (RefSeq) | compare |
| b1105 | ycfM | -1.5 | -1.6 | predicted outer membrane lipoprotein (NCBI) | compare |
| b2543 | yphA | -1.5 | -3.6 | predicted inner membrane protein (RefSeq) | compare |
| b0015 | dnaJ | -1.5 | -3.9 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1399 | paaX | -1.5 | -2.5 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b4571 | wbbL | -1.5 | -1.6 | no description | compare |
| b4501 | torI | -1.5 | -2.3 | response regulator inhibitor for tor operon (NCBI) | compare |
| b2051 | wcaH | -1.5 | -0.8 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b2476 | purC | -1.5 | -1.8 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b1626 | b1626 | -1.5 | -3.6 | orf, hypothetical protein (VIMSS) | compare |
| b3790 | rffC | -1.5 | -1.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0406 | tgt | -1.5 | -3.1 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b0632 | dacA | -1.5 | -5.0 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3649 | rpoZ | -1.5 | -1.0 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b4217 | ytfK | -1.5 | -3.2 | orf, hypothetical protein (VIMSS) | compare |
| b3086 | ygjQ | -1.4 | -1.7 | predicted thioredoxin-like (NCBI) | compare |
| b4541 | yehK | -1.4 | -2.2 | hypothetical protein (NCBI) | compare |
| b1593 | b1593 | -1.4 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1878 | flhE | -1.4 | -2.7 | hypothetical protein (NCBI) | compare |
| b1709 | btuD | -1.4 | -0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b0828 | iaaA | -1.4 | -1.9 | L-asparaginase (NCBI) | compare |
| b2331 | yfcN | -1.4 | -4.0 | hypothetical protein (NCBI) | compare |
| b1304 | pspA | -1.4 | -2.1 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b3017 | sufI | -1.4 | -4.9 | repressor protein for FtsI (NCBI) | compare |
| b1322 | ycjF | -1.4 | -2.7 | hypothetical protein (NCBI) | compare |
| b0866 | ybjQ | -1.4 | -0.7 | hypothetical protein (NCBI) | compare |
| b4045 | yjbJ | -1.4 | -1.5 | predicted stress response protein (NCBI) | compare |
| b2859 | ygeO | -1.4 | -1.0 | hypothetical protein (RefSeq) | compare |
| b3753 | rbsR | -1.4 | -4.8 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b4596 | yciZ | -1.4 | -0.8 | hypothetical protein (RefSeq) | compare |
| b1503 | ydeR | -1.4 | -1.7 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2340 | sixA | -1.4 | -1.4 | phosphohistidine phosphatase (NCBI) | compare |
| b4394 | yjjX | -1.4 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0101 | yacG | -1.4 | -1.7 | zinc-binding protein (NCBI) | compare |
| b2187 | yejL | -1.4 | -1.5 | hypothetical protein (NCBI) | compare |
| b1482 | osmC | -1.4 | -1.3 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b3766 | ilvL | -1.4 | -1.9 | ilvG operon leader peptide (NCBI) | compare |
| b2938 | speA | -1.4 | -4.2 | arginine decarboxylase (NCBI) | compare |
| b2602 | yfiL | -1.4 | -4.1 | orf, hypothetical protein (VIMSS) | compare |
| b2398 | yfeC | -1.4 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4191 | ulaR | -1.4 | -1.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0556 | rzpD | -1.4 | -1.8 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b1793 | yoaF | -1.4 | -1.3 | conserved outer membrane protein (NCBI) | compare |
| b1789 | yeaL | -1.4 | -2.2 | conserved inner membrane protein (NCBI) | compare |
| b0676 | nagC | -1.4 | -3.9 | DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI) | compare |
| b2248 | yfaX | -1.3 | -1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4035 | malK | -1.3 | -3.5 | fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein (NCBI) | compare |
| b0746 | valZ | -1.3 | -0.9 | tRNA-Val (NCBI) | compare |
| b0858 | ybjO | -1.3 | -1.1 | predicted inner membrane protein (NCBI) | compare |
| b3029 | ygiN | -1.3 | -1.6 | quinol monooxygenase (NCBI) | compare |
| b3032 | cpdA | -1.3 | -3.9 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b2512 | yfgL | -1.3 | -2.5 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1804 | rnd | -1.3 | -1.8 | ribonuclease D (NCBI) | compare |
| b0850 | ybjC | -1.3 | -1.3 | predicted inner membrane protein (NCBI) | compare |
| b2012 | yeeD | -1.3 | -1.7 | hypothetical protein (NCBI) | compare |
| b1814 | sdaA | -1.3 | -2.5 | L-serine deaminase I (NCBI) | compare |
| b3347 | fkpA | -1.3 | -5.5 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) | compare |