Experiment set54IT085 for Escherichia coli BW25113

Compare to:

vcDART vector transformation; liquid outgrowth assay

Genes with specific phenotypes:

  gene name fitness t score description  
b3038 ygiC -4.2 -10.5 predicted enzyme (NCBI) compare
b3466 yhhL -3.6 -5.5 conserved inner membrane protein (NCBI) compare
b0441 ppiD -3.6 -12.5 peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) compare
b2101 yegW -3.3 -5.0 predicted DNA-binding transcriptional regulator (NCBI) compare
b2707 srlR -3.2 -6.9 DNA-bindng transcriptional repressor (NCBI) compare
b3037 ygiB -3.0 -6.0 conserved outer membrane protein (RefSeq) compare
b4241 treR -3.0 -11.0 trehalose repressor (NCBI) compare
b1422 ydcI -2.8 -6.0 putative transcriptional regulator LYSR-type (VIMSS) compare
b3403 pck -2.4 -8.5 phosphoenolpyruvate carboxykinase (NCBI) compare
b3932 hslV -2.3 -7.9 ATP-dependent protease peptidase subunit (NCBI) compare
b3529 yhjK -2.2 -10.7 predicted diguanylate cyclase (RefSeq) compare
b3423 glpR -2.2 -6.7 DNA-binding transcriptional repressor (NCBI) compare
b3931 hslU -2.1 -9.1 ATP-dependent protease ATP-binding subunit (NCBI) compare
b2844 yqeF -2.0 -5.9 putative acyltransferase (VIMSS) compare
b1629 rsxC -2.0 -5.3 electron transport complex protein RnfC (NCBI) compare
b3752 rbsK -2.0 -7.2 ribokinase (NCBI) compare
b3424 glpG -2.0 -8.0 predicted intramembrane serine protease (NCBI) compare
b2037 rfbX -1.9 -6.0 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b2039 rfbA -1.7 -8.4 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b4140 b4140 -1.7 -5.5 orf, hypothetical protein (VIMSS) compare
b3673 emrD -1.4 -6.3 2-module integral membrane pump; multidrug resistance (VIMSS) compare
b3289 rsmB -1.3 -5.3 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) compare
b3891 fdhE -1.2 -5.1 formate dehydrogenase accessory protein FdhE (NCBI) compare
b2786 barA -1.1 -8.2 hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) compare
b3244 tldD -1.1 -5.0 predicted peptidase (NCBI) compare
b3347 fkpA -1.1 -5.1 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) compare
b3498 prlC -1.0 -5.2 oligopeptidase A (NCBI) compare
b4089 rpiR +1.0 5.5 transcriptional repressor of rpiB expression (VIMSS) compare
b4058 uvrA +1.1 7.6 excinuclease ABC subunit A (NCBI) compare
b3708 tnaA +1.1 7.0 tryptophanase (VIMSS) compare
b1439 ydcR +1.1 6.3 fused predicted DNA-binding transcriptional regulator/predicted amino transferase (NCBI) compare
b4170 mutL +1.2 5.5 DNA mismatch repair protein (NCBI) compare
b3197 kdsD +1.2 5.9 D-arabinose 5-phosphate isomerase (NCBI) compare
b2532 yfhQ +1.2 5.7 predicted methyltransferase (NCBI) compare
b3810 yigA +1.3 7.7 hypothetical protein (NCBI) compare
b0065 yabI +1.3 5.5 conserved inner membrane protein (NCBI) compare
b3788 rffG +1.3 5.4 dTDP-glucose 4,6-dehydratase (NCBI) compare
b0473 htpG +1.3 7.4 heat shock protein 90 (NCBI) compare
b3252 yhdA +1.4 9.3 conserved inner membrane protein (NCBI) compare
b1854 pykA +1.4 6.7 pyruvate kinase (NCBI) compare
b3802 hemY +1.4 9.8 predicted protoheme IX synthesis protein (NCBI) compare
b0869 ybjT +1.5 8.2 putative dTDP-glucose enzyme (VIMSS) compare
b3789 rffH +1.6 6.8 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b3095 yqjA +1.6 6.0 conserved inner membrane protein (NCBI) compare
b0931 pncB +1.6 5.6 nicotinate phosphoribosyltransferase (NCBI) compare
b0081 mraZ +1.6 8.9 hypothetical protein (NCBI) compare
b2743 pcm +1.7 5.3 protein-L-isoaspartate O-methyltransferase (NCBI) compare
b0393 rdgC +1.7 10.4 recombination associated protein (NCBI) compare
b1840 yebZ +1.7 8.5 predicted inner membrane protein (NCBI) compare
b1086 rluC +1.7 7.4 23S rRNA pseudouridylate synthase (NCBI) compare
b3349 slyD +1.7 7.7 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) compare
b3258 panF +1.7 10.4 sodium/pantothenate symporter (VIMSS) compare
b1329 b1329 +1.8 9.9 putative transport periplasmic protein (VIMSS) compare
b0636 ybeA +1.8 8.7 hypothetical protein (NCBI) compare
b3999 yjaG +1.9 6.2 hypothetical protein (NCBI) compare
b2908 pepP +1.9 6.4 proline aminopeptidase P II (NCBI) compare
b3803 hemX +1.9 11.7 predicted uroporphyrinogen III methylase (NCBI) compare
b3009 yghB +1.9 7.6 conserved inner membrane protein (NCBI) compare
b3257 yhdT +2.0 5.3 conserved inner membrane protein (NCBI) compare
b2584 yfiQ +2.0 9.7 fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) compare
b2522 sseB +2.1 16.2 enhanced serine sensitivity (VIMSS) compare
b1777 b1777 +2.1 6.5 orf, hypothetical protein (VIMSS) compare
b0216 aspV +2.2 5.2 tRNA-Asp (NCBI) compare
b1088 yceD +2.2 7.5 hypothetical protein (NCBI) compare
b1234 rssA +2.2 6.5 conserved protein (RefSeq) compare
b1989 asnV +2.2 5.8 tRNA-Asn (NCBI) compare
b3166 truB +2.4 17.0 tRNA pseudouridine synthase B (NCBI) compare
b4371 rsmC +2.4 15.1 16S ribosomal RNA m2G1207 methyltransferase (NCBI) compare
b2436 hemF +2.4 8.5 coproporphyrinogen III oxidase (NCBI) compare
b2502 ppx +2.5 13.1 exopolyphosphatase (NCBI) compare
b2587 kgtP +2.5 5.8 alpha-ketoglutarate transporter (NCBI) compare
b0458 ylaC +2.8 19.2 orf, hypothetical protein (VIMSS) compare
b1612 fumA +2.8 9.1 fumarate hydratase (fumarase A), aerobic Class I (NCBI) compare
b2819 recD +2.8 19.1 exonuclease V (RecBCD complex), alpha chain (NCBI) compare
b2946 yggJ +3.0 15.0 orf, hypothetical protein (VIMSS) compare
b3232 yhcM +3.1 17.6 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare
b2218 rcsC +3.1 22.4 hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) compare
b4391 yjjK +3.1 22.4 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b0427 yajR +3.6 28.6 putative transport protein (VIMSS) compare
b2216 rcsD +3.8 12.8 phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) compare
b3626 rfaJ +4.1 15.2 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) compare
b2113 mrp +4.1 21.3 putative ATPase (VIMSS) compare
b1835 yebU +4.7 31.5 putative nucleolar proteins (VIMSS) compare


Specific phenotypes for plasmid transformation Kanamycin sulfate across organisms