| | gene | name | fitness | t score | description | |
|---|
| b1830 | prc | -1.6 | -4.6 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1575 | dicB | -1.5 | -2.7 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1103 | ycfF | -1.5 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1961 | dcm | -1.5 | -2.3 | DNA cytosine methylase (NCBI) | compare |
| b4520 | ymgF | -1.4 | -1.9 | hypothetical protein (NCBI) | compare |
| b2637 | yfjT | -1.3 | -3.6 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4175 | hflC | -1.3 | -7.0 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1583 | ynfB | -1.3 | -4.0 | hypothetical protein (NCBI) | compare |
| b1709 | btuD | -1.3 | -1.2 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1865 | nudB | -1.3 | -1.1 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1620 | malI | -1.2 | -3.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3466 | yhhL | -1.2 | -5.1 | conserved inner membrane protein (NCBI) | compare |
| b1164 | ycgZ | -1.2 | -1.4 | hypothetical protein (NCBI) | compare |
| b1503 | ydeR | -1.2 | -3.1 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1192 | ldcA | -1.2 | -2.6 | L,D-carboxypeptidase A (NCBI) | compare |
| b4174 | hflK | -1.2 | -6.4 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b4702 | mgtL | -1.1 | -1.0 | regulatory leader peptide for mgtA (NCBI) | compare |
| b1882 | cheY | -1.1 | -0.6 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1936 | intG | -1.1 | -1.0 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b4045 | yjbJ | -1.1 | -1.9 | predicted stress response protein (NCBI) | compare |
| b0889 | lrp | -1.1 | -3.9 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b4048 | yjbM | -1.1 | -1.7 | hypothetical protein (NCBI) | compare |
| b0232 | yafN | -1.1 | -0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4647 | mokA | -1.0 | -0.9 | no description | compare |
| b1765 | ydjA | -1.0 | -1.0 | predicted oxidoreductase (NCBI) | compare |
| b0970 | yccA | -1.0 | -2.0 | inner membrane protein (NCBI) | compare |
| b3107 | yhaL | -1.0 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0059 | hepA | -1.0 | -8.6 | ATP-dependent helicase HepA (NCBI) | compare |
| b3912 | cpxR | -1.0 | -5.0 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b4593 | ymgI | -0.9 | -0.6 | hypothetical protein (RefSeq) | compare |
| b1255 | yciC | -0.9 | -3.0 | hypothetical protein (NCBI) | compare |
| b1361 | ydaW | -0.9 | -0.3 | orf, hypothetical protein (VIMSS) | compare |
| b2912 | ygfA | -0.9 | -2.0 | putative ligase (VIMSS) | compare |
| b2494 | yfgC | -0.9 | -5.3 | predicted peptidase (NCBI) | compare |
| b3555 | yiaG | -0.9 | -2.9 | predicted transcriptional regulator (NCBI) | compare |
| b0441 | ppiD | -0.9 | -6.2 | peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) | compare |
| b1818 | manY | -0.9 | -2.5 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b0088 | murD | -0.8 | -0.9 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b1422 | ydcI | -0.8 | -3.8 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b3038 | ygiC | -0.8 | -5.3 | predicted enzyme (NCBI) | compare |
| b4232 | fbp | -0.8 | -3.8 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b0364 | yaiS | -0.8 | -2.9 | orf, hypothetical protein (VIMSS) | compare |
| b1493 | gadB | -0.8 | -0.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1368 | ynaA | -0.8 | -2.3 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b0418 | pgpA | -0.8 | -3.5 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b3119 | tdcR | -0.8 | -1.3 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b4509 | ylcG | -0.7 | -2.2 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2111 | yehD | -0.7 | -2.0 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1793 | yoaF | -0.7 | -1.4 | conserved outer membrane protein (NCBI) | compare |
| b2698 | recX | -0.7 | -1.5 | RecA regulator RecX (NCBI) | compare |
| b4480 | hdfR | -0.7 | -3.5 | transcriptional regulator HdfR (NCBI) | compare |
| b2433 | b2433 | -0.7 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3611 | yibN | -0.7 | -2.9 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b2071 | yegJ | -0.7 | -1.4 | hypothetical protein (NCBI) | compare |
| b1524 | yneH | -0.7 | -0.8 | predicted glutaminase (NCBI) | compare |
| b4552 | yrhC | -0.7 | -0.6 | no description | compare |
| b1332 | ynaJ | -0.7 | -0.5 | predicted inner membrane protein (NCBI) | compare |
| b2824 | ygdB | -0.7 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1278 | pgpB | -0.7 | -1.7 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b3623 | rfaK | -0.7 | -1.4 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b2258 | b2258 | -0.7 | -1.1 | putative transport/receptor protein (VIMSS) | compare |
| b0407 | yajC | -0.7 | -1.5 | preprotein translocase subunit YajC (NCBI) | compare |
| b0142 | folK | -0.7 | -0.3 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2168 | fruK | -0.7 | -0.5 | 1-phosphofructokinase (NCBI) | compare |
| b2904 | gcvH | -0.7 | -1.9 | glycine cleavage system protein H (NCBI) | compare |
| b1185 | dsbB | -0.7 | -1.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3500 | gor | -0.6 | -0.7 | glutathione reductase (NCBI) | compare |
| b2952 | yggT | -0.6 | -3.9 | predicted inner membrane protein (NCBI) | compare |
| b3839 | tatC | -0.6 | -1.0 | TatABCE protein translocation system subunit (NCBI) | compare |
| b2512 | yfgL | -0.6 | -2.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1650 | nemA | -0.6 | -3.4 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b1734 | chbF | -0.6 | -3.3 | cryptic phospho-beta-glucosidase, NAD(P)-binding (NCBI) | compare |
| b4373 | rimI | -0.6 | -2.5 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b2636 | b2636 | -0.6 | -2.9 | orf, hypothetical protein (VIMSS) | compare |
| b1111 | ycfQ | -0.6 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2362 | yfdS | -0.6 | -2.3 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b4128 | yjdK | -0.6 | -0.4 | hypothetical protein (NCBI) | compare |
| b1150 | ymfR | -0.6 | -0.8 | e14 prophage; predicted protein (NCBI) | compare |
| b4450 | arcZ | -0.6 | -2.7 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0688 | pgm | -0.6 | -1.0 | phosphoglucomutase (NCBI) | compare |
| b4630 | ykgP | -0.6 | -1.9 | no description | compare |
| b2058 | wcaB | -0.6 | -0.8 | predicted acyl transferase (NCBI) | compare |
| b0294 | ykgK | -0.6 | -2.1 | predicted regulator (NCBI) | compare |
| b3932 | hslV | -0.6 | -4.3 | ATP-dependent protease peptidase subunit (NCBI) | compare |
| b4522 | yciX_1 | -0.6 | -1.4 | hypothetical protein (NCBI) | compare |
| b4241 | treR | -0.6 | -4.8 | trehalose repressor (NCBI) | compare |
| b3979 | thrT | -0.6 | -0.2 | tRNA-Thr (NCBI) | compare |
| b3117 | tdcB | -0.6 | -4.6 | threonine dehydratase (NCBI) | compare |
| b2682 | ygaZ | -0.6 | -2.8 | predicted transporter (NCBI) | compare |
| b1640 | ydhH | -0.6 | -1.1 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b4557 | yidD | -0.5 | -1.9 | hypothetical protein (NCBI) | compare |
| b2372 | yfdV | -0.5 | -3.2 | predicted transporter (NCBI) | compare |
| b3875 | ompL | -0.5 | -1.6 | predicted outer membrane porin L (NCBI) | compare |
| b1963 | b1963 | -0.5 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0791 | ybhQ | -0.5 | -1.7 | predicted inner membrane protein (NCBI) | compare |
| b4699 | fnrS | -0.5 | -0.5 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1179 | ycgL | -0.5 | -1.4 | conserved protein (NCBI) | compare |
| b1476 | fdnI | -0.5 | -0.7 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b1914 | uvrY | -0.5 | -2.0 | response regulator (NCBI) | compare |
| b3792 | wzxE | -0.5 | -0.6 | O-antigen translocase (NCBI) | compare |
| b0508 | hyi | -0.5 | -1.4 | hydroxypyruvate isomerase (NCBI) | compare |
| b0145 | dksA | -0.5 | -1.2 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1595 | ynfL | -0.5 | -1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2099 | yegU | -0.5 | -1.8 | predicted hydrolase (NCBI) | compare |
| b1677 | lpp | -0.5 | -0.9 | murein lipoprotein (NCBI) | compare |
| b2939 | yqgB | -0.5 | -0.8 | predicted protein (RefSeq) | compare |
| b0143 | pcnB | -0.5 | -2.2 | poly(A) polymerase I (VIMSS) | compare |
| b1540 | ydfH | -0.5 | -1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0881 | clpS | -0.5 | -0.7 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b1160 | elbA | -0.5 | -0.6 | hypothetical protein (NCBI) | compare |
| b1577 | ydfE | -0.5 | -2.5 | Qin prophage; predicted protein (RefSeq) | compare |
| b3931 | hslU | -0.5 | -3.7 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3465 | yhhF | -0.5 | -1.6 | predicted methyltransferase (NCBI) | compare |
| b2934 | cmtB | -0.5 | -0.5 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3022 | b3022 | -0.5 | -3.3 | predicted cyanide hydratase (NCBI) | compare |
| b2266 | elaB | -0.5 | -1.6 | hypothetical protein (NCBI) | compare |
| b4481 | rffT | -0.5 | -1.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0610 | rnk | -0.5 | -1.3 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b4535 | yniD | -0.5 | -0.6 | predicted protein (RefSeq) | compare |
| b2080 | b2080 | -0.5 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2446 | yffO | -0.5 | -1.3 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b4140 | b4140 | -0.5 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b0653 | gltK | -0.5 | -2.5 | glutamate and aspartate transporter subunit (NCBI) | compare |
| b2734 | pphB | -0.5 | -1.9 | serine/threonine-specific protein phosphatase 2 (NCBI) | compare |
| b1615 | uidC | -0.5 | -1.7 | membrane-associated protein (VIMSS) | compare |
| b3549 | tag | -0.5 | -3.2 | 3-methyl-adenine DNA glycosylase I, constitutive (NCBI) | compare |
| b1377 | ompN | -0.4 | -1.9 | outer membrane pore protein N, non-specific (NCBI) | compare |
| b2707 | srlR | -0.4 | -2.4 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b0097 | yacA | -0.4 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1960 | vsr | -0.4 | -1.9 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b4487 | yjdP | -0.4 | -2.9 | hypothetical protein (NCBI) | compare |
| b1531 | marA | -0.4 | -1.7 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b0338 | cynR | -0.4 | -1.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3962 | udhA | -0.4 | -0.5 | putative oxidoreductase (VIMSS) | compare |
| b2903 | gcvP | -0.4 | -3.6 | glycine dehydrogenase (NCBI) | compare |
| b4632 | ylbI | -0.4 | -3.3 | no description | compare |
| b1878 | flhE | -0.4 | -2.2 | hypothetical protein (NCBI) | compare |
| b3723 | bglG | -0.4 | -2.1 | transcriptional antiterminator of the bgl operon (NCBI) | compare |
| b4573 | insZ | -0.4 | -1.6 | no description | compare |
| b0926 | ycbK | -0.4 | -2.2 | hypothetical protein (NCBI) | compare |
| b4567 | yjjZ | -0.4 | -2.2 | hypothetical protein (NCBI) | compare |
| b1739 | osmE | -0.4 | -1.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1630 | rsxD | -0.4 | -1.4 | electron transport complex protein RnfD (NCBI) | compare |
| b0559 | ybcW | -0.4 | -1.9 | DLP12 prophage; predicted protein (NCBI) | compare |
| b3392 | yrfA | -0.4 | -2.9 | orf, hypothetical protein (VIMSS) | compare |
| b4644 | ypjI | -0.4 | -2.0 | no description | compare |
| b4558 | yifL | -0.4 | -1.3 | predicted lipoprotein (NCBI) | compare |
| b4415 | hokE | -0.4 | -1.9 | toxic polypeptide, small (NCBI) | compare |
| b1636 | pdxY | -0.4 | -2.5 | pyridoxine kinase (NCBI) | compare |
| b3624 | rfaZ | -0.4 | -0.9 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2859 | ygeO | -0.4 | -1.0 | hypothetical protein (RefSeq) | compare |
| b2602 | yfiL | -0.4 | -3.0 | orf, hypothetical protein (VIMSS) | compare |
| b4631 | ykgQ | -0.4 | -0.9 | no description | compare |
| b0617 | citD | -0.4 | -1.3 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b0064 | araC | -0.4 | -2.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1685 | ydiH | -0.4 | -0.7 | predicted protein (RefSeq) | compare |
| b4596 | yciZ | -0.4 | -0.7 | hypothetical protein (RefSeq) | compare |
| b3013 | yqhG | -0.4 | -2.5 | hypothetical protein (NCBI) | compare |
| b0080 | fruR | -0.4 | -1.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0852 | rimK | -0.4 | -1.5 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0053 | surA | -0.4 | -0.9 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b2683 | ygaH | -0.4 | -2.0 | predicted inner membrane protein (NCBI) | compare |
| b1465 | narV | -0.4 | -0.5 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b4171 | miaA | -0.4 | -0.7 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b1442 | ydcU | -0.4 | -1.5 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b2844 | yqeF | -0.4 | -2.6 | putative acyltransferase (VIMSS) | compare |
| b2985 | yghS | -0.4 | -2.6 | predicted protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b1219 | ychN | -0.4 | -1.3 | hypothetical protein (NCBI) | compare |
| b1175 | minD | -0.4 | -1.0 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3163 | nlpI | -0.4 | -1.5 | hypothetical protein (NCBI) | compare |
| b0200 | gmhB | -0.4 | -0.3 | hypothetical protein (NCBI) | compare |
| b3562 | yiaA | -0.4 | -3.3 | orf, hypothetical protein (VIMSS) | compare |
| b1558 | cspF | -0.4 | -1.0 | Qin prophage; cold shock protein (NCBI) | compare |
| b4652 | yibU | -0.4 | -2.6 | no description | compare |
| b1605 | ydgI | -0.4 | -2.1 | predicted arginine/ornithine antiporter transporter (NCBI) | compare |
| b3199 | yrbK | -0.4 | -1.3 | hypothetical protein (NCBI) | compare |
| b0437 | clpP | -0.4 | -1.0 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b0388 | aroL | -0.4 | -1.6 | shikimate kinase II (NCBI) | compare |
| b1588 | ynfF | -0.4 | -1.5 | oxidoreductase subunit (RefSeq) | compare |
| b4268 | idnK | -0.4 | -2.1 | D-gluconate kinase, thermosensitive (NCBI) | compare |
| b4348 | hsdS | -0.4 | -3.0 | specificity determinant for hsdM and hsdR (NCBI) | compare |
| b1304 | pspA | -0.4 | -0.9 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b4413 | sokC | -0.4 | -0.7 | regulatory antisense RNA (NCBI) | compare |
| b2510 | b2510 | -0.4 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0015 | dnaJ | -0.4 | -2.4 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b3870 | glnA | -0.4 | -0.9 | glutamine synthetase (NCBI) | compare |
| b2009 | sbmC | -0.4 | -1.7 | DNA gyrase inhibitor (NCBI) | compare |
| b2668 | ygaP | -0.4 | -1.9 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b0489 | ybbK | -0.4 | -1.9 | predicted protease, membrane anchored (NCBI) | compare |
| b1287 | yciW | -0.4 | -1.2 | putative oxidoreductase (VIMSS) | compare |
| b2741 | rpoS | -0.4 | -2.1 | RNA polymerase sigma factor (NCBI) | compare |
| b4622 | ytcA | -0.4 | -1.9 | hypothetical protein (RefSeq) | compare |
| b3973 | birA | -0.4 | -1.2 | biotin--protein ligase (NCBI) | compare |
| b3811 | xerC | -0.4 | -0.2 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b2669 | stpA | -0.4 | -3.0 | DNA binding protein, nucleoid-associated (NCBI) | compare |
| b4436 | ryeC | -0.4 | -0.7 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3512 | GadE | -0.4 | -1.7 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0238 | gpt | -0.4 | -1.7 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b2633 | yfjQ | -0.4 | -1.9 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4501 | torI | -0.4 | -1.8 | response regulator inhibitor for tor operon (NCBI) | compare |