| | gene | name | fitness | t score | description | |
|---|
| b3961 | oxyR | +7.1 | 4.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3414 | gntY | +5.3 | 13.0 | predicted gluconate transport associated protein (NCBI) | compare |
| b2528 | iscA | +4.7 | 4.5 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b2281 | nuoI | +4.6 | 9.2 | NADH dehydrogenase subunit I (NCBI) | compare |
| b2283 | nuoG | +4.3 | 18.2 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2284 | nuoF | +4.2 | 12.5 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b2282 | nuoH | +4.0 | 8.2 | NADH dehydrogenase subunit H (NCBI) | compare |
| b2280 | nuoJ | +3.9 | 15.0 | NADH dehydrogenase subunit J (NCBI) | compare |
| b2276 | nuoN | +3.9 | 14.6 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b0683 | fur | +3.9 | 2.9 | ferric uptake regulator (NCBI) | compare |
| b3844 | fre | +3.8 | 13.9 | NAD(P)H-flavin reductase (NCBI) | compare |
| b0430 | cyoC | +3.7 | 19.7 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b2287 | nuoB | +3.7 | 9.6 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0720 | gltA | +3.6 | 24.9 | citrate synthase (NCBI) | compare |
| b0428 | cyoE | +3.6 | 21.4 | protoheme IX farnesyltransferase (NCBI) | compare |
| b0592 | fepB | +3.5 | 21.3 | iron-enterobactin transporter subunit (NCBI) | compare |
| b2278 | nuoL | +3.5 | 19.7 | NADH dehydrogenase subunit L (NCBI) | compare |
| b0429 | cyoD | +3.5 | 15.1 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b2286 | nuoC | +3.4 | 10.9 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2017 | yefM | +3.4 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b0588 | fepC | +3.4 | 19.0 | iron-enterobactin transporter subunit (NCBI) | compare |
| b0590 | fepD | +3.4 | 17.2 | iron-enterobactin transporter subunit (NCBI) | compare |
| b0432 | cyoA | +3.3 | 22.8 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b2277 | nuoM | +3.3 | 13.1 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2285 | nuoE | +3.3 | 4.3 | NADH dehydrogenase subunit E (NCBI) | compare |
| b2288 | nuoA | +3.3 | 11.6 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0589 | fepG | +3.2 | 18.6 | iron-enterobactin transporter subunit (NCBI) | compare |
| b4402 | yjjY | +3.2 | 2.8 | hypothetical protein (NCBI) | compare |
| b2906 | visC | +3.2 | 17.6 | hypothetical protein (NCBI) | compare |
| b3778 | rep | +3.0 | 11.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b0722 | sdhD | +3.0 | 8.6 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b0431 | cyoB | +3.0 | 21.3 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b2479 | gcvR | +2.9 | 9.4 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b3871 | bipA | +2.9 | 18.4 | GTP-binding protein (NCBI) | compare |
| b1236 | galU | +2.7 | 8.1 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3398 | yrfF | +2.7 | 8.7 | predicted inner membrane protein (NCBI) | compare |
| b2531 | iscR | +2.6 | 3.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3631 | rfaG | +2.6 | 21.0 | glucosyltransferase I (NCBI) | compare |
| b0723 | sdhA | +2.6 | 14.4 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b3236 | mdh | +2.5 | 13.9 | malate dehydrogenase (NCBI) | compare |
| b0724 | sdhB | +2.5 | 9.6 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b3630 | rfaP | +2.5 | 15.9 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b0427 | yajR | +2.4 | 18.1 | putative transport protein (VIMSS) | compare |
| b3390 | aroK | +2.4 | 2.1 | shikimate kinase I (NCBI) | compare |
| b3162 | deaD | +2.4 | 7.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4414 | tff | +2.4 | 3.0 | unknown RNA (NCBI) | compare |
| b3237 | argR | +2.4 | 7.1 | arginine repressor (NCBI) | compare |
| b2784 | relA | +2.4 | 13.8 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b2576 | srmB | +2.4 | 4.7 | ATP-dependent RNA helicase (NCBI) | compare |
| b2814 | metZ | +2.4 | 3.6 | tRNA-Met (NCBI) | compare |
| b3842 | rfaH | +2.4 | 10.3 | transcriptional activator RfaH (NCBI) | compare |
| b0014 | dnaK | +2.3 | 4.3 | molecular chaperone DnaK (NCBI) | compare |
| b1658 | purR | +2.2 | 10.1 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b0623 | cspE | +2.2 | 3.4 | cold shock protein E (NCBI) | compare |
| b3636 | rpmG | +2.2 | 4.4 | 50S ribosomal protein L33 (NCBI) | compare |
| b0721 | sdhC | +2.1 | 6.1 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b0222 | lpcA | +2.1 | 3.0 | phosphoheptose isomerase (NCBI) | compare |
| b3493 | pitA | +2.1 | 10.8 | phosphate transporter, low-affinity (NCBI) | compare |
| b0585 | fes | +2.0 | 8.0 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b4515 | ybgT | +2.0 | 5.9 | hypothetical protein (NCBI) | compare |
| b4201 | priB | +1.9 | 5.0 | primosomal replication protein N (NCBI) | compare |
| b0191 | yaeJ | +1.9 | 5.4 | hypothetical protein (NCBI) | compare |
| b2279 | nuoK | +1.9 | 2.4 | NADH dehydrogenase subunit K (NCBI) | compare |
| b4234 | yjgA | +1.8 | 6.8 | hypothetical protein (NCBI) | compare |
| b0729 | sucD | +1.8 | 3.5 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b2498 | upp | +1.8 | 2.5 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2895 | fldB | +1.7 | 4.9 | flavodoxin 2 (NCBI) | compare |
| b1161 | ycgX | +1.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b3977 | tyrU | +1.7 | 1.7 | tRNA-Tyr (NCBI) | compare |
| b3761 | trpT | +1.7 | 3.0 | tRNA-Trp (NCBI) | compare |
| b3806 | cyaA | +1.7 | 6.9 | adenylate cyclase (NCBI) | compare |
| b2113 | mrp | +1.7 | 8.0 | putative ATPase (VIMSS) | compare |
| b3545 | proK | +1.6 | 2.9 | tRNA-Pro (NCBI) | compare |
| b1730 | ydjO | +1.6 | 2.5 | predicted protein (RefSeq) | compare |
| b0888 | trxB | +1.6 | 4.8 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b4139 | aspA | +1.6 | 9.4 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b1235 | rssB | +1.6 | 8.2 | response regulator of RpoS (NCBI) | compare |
| b4685 | yrbN | +1.5 | 3.6 | expressed protein (RefSeq) | compare |
| b3609 | secB | +1.5 | 4.9 | export protein SecB (NCBI) | compare |
| b1346 | ydaQ | +1.5 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b3183 | obgE | +1.5 | 0.9 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3164 | pnp | +1.5 | 3.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3232 | yhcM | +1.4 | 10.2 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b0082 | mraW | +1.4 | 3.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0471 | ybaB | +1.4 | 3.7 | hypothetical protein (NCBI) | compare |
| b3807 | cyaY | +1.4 | 7.5 | frataxin-like protein (NCBI) | compare |
| b0728 | sucC | +1.4 | 5.3 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b1095 | fabF | +1.4 | 5.6 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1855 | lpxM | +1.4 | 4.4 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b3229 | sspA | +1.4 | 2.1 | stringent starvation protein A (NCBI) | compare |
| b3911 | cpxA | +1.4 | 5.1 | two-component sensor protein (NCBI) | compare |
| b3341 | rpsG | +1.3 | 1.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b4208 | cycA | +1.3 | 9.3 | D-alanine/D-serine/glycine transporter (NCBI) | compare |
| b1252 | tonB | +1.3 | 3.0 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1835 | yebU | +1.3 | 7.3 | putative nucleolar proteins (VIMSS) | compare |
| b1612 | fumA | +1.2 | 5.0 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b0784 | moaD | +1.2 | 3.8 | molybdopterin synthase, small subunit (NCBI) | compare |
| b0216 | aspV | +1.2 | 4.3 | tRNA-Asp (NCBI) | compare |
| b3620 | rfaF | +1.2 | 4.6 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b2293 | yfbT | +1.2 | 3.2 | putative phosphatase (VIMSS) | compare |
| b1281 | pyrF | +1.2 | 3.5 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b1712 | ihfA | +1.2 | 1.1 | integration host factor subunit alpha (NCBI) | compare |
| b1090 | plsX | +1.2 | 4.5 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b1860 | ruvB | +1.2 | 0.7 | Holliday junction DNA helicase B (NCBI) | compare |
| b3616 | tdh | +1.1 | 5.2 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b0605 | ahpC | +1.1 | 2.1 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b1286 | rnb | +1.1 | 2.4 | exoribonuclease II (NCBI) | compare |
| b1347 | ydaC | +1.1 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b1551 | b1551 | +1.1 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b3190 | yrbA | +1.1 | 5.3 | orf, hypothetical protein (VIMSS) | compare |
| b2216 | rcsD | +1.1 | 7.6 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b2897 | ygfY | +1.1 | 1.9 | hypothetical protein (NCBI) | compare |
| b0019 | nhaA | +1.1 | 7.3 | pH-dependent sodium/proton antiporter (NCBI) | compare |
| b2830 | nudH | +1.1 | 0.9 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3052 | rfaE | +1.1 | 2.5 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3198 | kdsC | +1.1 | 3.8 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b0458 | ylaC | +1.1 | 5.4 | orf, hypothetical protein (VIMSS) | compare |
| b1025 | ycdT | +1.0 | 2.4 | predicted diguanylate cyclase (NCBI) | compare |
| b2330 | yfcB | +1.0 | 1.1 | putative adenine-specific methylase (VIMSS) | compare |
| b3387 | dam | +1.0 | 7.8 | DNA adenine methylase (NCBI) | compare |
| b3210 | arcB | +1.0 | 6.1 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b0564 | appY | +1.0 | 1.5 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3204 | ptsN | +1.0 | 3.4 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b1600 | mdtJ | +1.0 | 2.7 | multidrug efflux system transporter (NCBI) | compare |
| b1506 | yneL | +1.0 | 1.2 | predicted transcriptional regulator (NCBI) | compare |
| b1279 | yciS | +1.0 | 1.5 | conserved inner membrane protein (NCBI) | compare |
| b3766 | ilvL | +1.0 | 3.7 | ilvG operon leader peptide (NCBI) | compare |
| b4243 | yjgF | +1.0 | 4.0 | orf, hypothetical protein (VIMSS) | compare |
| b3257 | yhdT | +1.0 | 3.5 | conserved inner membrane protein (NCBI) | compare |
| b0726 | sucA | +1.0 | 1.0 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b4578 | insP | +1.0 | 3.2 | no description | compare |
| b2688 | gshA | +0.9 | 5.6 | glutamate--cysteine ligase (NCBI) | compare |
| b2699 | recA | +0.9 | 0.6 | recombinase A (NCBI) | compare |
| b0438 | clpX | +0.9 | 4.4 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b4585 | sroB | +0.9 | 1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b0469 | apt | +0.9 | 5.4 | adenine phosphoribosyltransferase (NCBI) | compare |
| b1921 | fliZ | +0.9 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b3999 | yjaG | +0.9 | 4.1 | hypothetical protein (NCBI) | compare |
| b1989 | asnV | +0.9 | 2.9 | tRNA-Asn (NCBI) | compare |
| b0912 | ihfB | +0.9 | 2.2 | integration host factor subunit beta (NCBI) | compare |
| b4180 | rlmB | +0.9 | 5.1 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b0237 | pepD | +0.9 | 4.9 | aminoacyl-histidine dipeptidase (peptidase D) (NCBI) | compare |
| b0741 | pal | +0.9 | 1.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b2908 | pepP | +0.9 | 4.7 | proline aminopeptidase P II (NCBI) | compare |
| b2569 | lepA | +0.9 | 2.3 | GTP-binding protein LepA (NCBI) | compare |
| b2518 | ndk | +0.9 | 1.7 | nucleoside diphosphate kinase (NCBI) | compare |
| b3260 | dusB | +0.8 | 3.8 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b1840 | yebZ | +0.8 | 4.3 | predicted inner membrane protein (NCBI) | compare |
| b2218 | rcsC | +0.8 | 6.4 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b1572 | ydfB | +0.8 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0685 | ybfE | +0.8 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4407 | thiS | +0.8 | 2.1 | sulfur carrier protein ThiS (NCBI) | compare |
| b2553 | glnB | +0.8 | 2.7 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b1074 | flgC | +0.8 | 2.3 | flagellar basal-body rod protein C (NCBI) | compare |
| b2565 | recO | +0.8 | 2.9 | DNA repair protein RecO (NCBI) | compare |
| b4178 | yjeB | +0.8 | 3.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2516 | yfgA | +0.8 | 3.6 | hypothetical protein (NCBI) | compare |
| b2237 | inaA | +0.8 | 1.8 | hypothetical protein (NCBI) | compare |
| b2584 | yfiQ | +0.8 | 5.8 | fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit (NCBI) | compare |
| b4018 | iclR | +0.8 | 4.6 | repressor of aceBA operon (VIMSS) | compare |
| b3005 | exbD | +0.8 | 4.3 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b3425 | glpE | +0.8 | 4.1 | thiosulfate sulfurtransferase (NCBI) | compare |
| b0092 | ddlB | +0.8 | 2.6 | D-alanylalanine synthetase (NCBI) | compare |
| b4484 | cpxP | +0.8 | 4.3 | periplasmic protein combats stress (NCBI) | compare |
| b2436 | hemF | +0.7 | 2.9 | coproporphyrinogen III oxidase (NCBI) | compare |
| b2579 | yfiD | +0.7 | 1.7 | pyruvate formate lyase subunit (NCBI) | compare |
| b0464 | acrR | +0.7 | 5.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0051 | ksgA | +0.7 | 2.0 | dimethyladenosine transferase (NCBI) | compare |
| b0450 | glnK | +0.7 | 1.3 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b1382 | ynbE | +0.7 | 1.5 | predicted lipoprotein (NCBI) | compare |
| b0949 | uup | +0.7 | 3.9 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2564 | pdxJ | +0.7 | 2.3 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b1684 | sufA | +0.7 | 1.6 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b1162 | ycgE | +0.7 | 3.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1573 | ydfC | +0.7 | 1.0 | Qin prophage; predicted protein (RefSeq) | compare |
| b4203 | rplI | +0.7 | 3.6 | 50S ribosomal protein L9 (NCBI) | compare |
| b4497 | yeeL | +0.7 | 1.1 | no description | compare |
| b2082 | ogrK | +0.7 | 2.9 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b2007 | yeeX | +0.7 | 1.7 | conserved protein (RefSeq) | compare |
| b3642 | pyrE | +0.7 | 2.7 | orotate phosphoribosyltransferase (NCBI) | compare |
| b4066 | yjcF | +0.7 | 0.4 | hypothetical protein (NCBI) | compare |
| b4391 | yjjK | +0.7 | 4.7 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1690 | ydiM | +0.7 | 2.3 | predicted transporter (NCBI) | compare |
| b3600 | mtlD | +0.7 | 3.3 | mannitol-1-phosphate 5-dehydrogenase (NCBI) | compare |
| b4371 | rsmC | +0.7 | 4.9 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b3794 | rffM | +0.7 | 2.6 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1566 | flxA | +0.7 | 2.1 | Qin prophage; predicted protein (NCBI) | compare |
| b4101 | phnG | +0.7 | 2.7 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b3191 | yrbB | +0.7 | 4.8 | orf, hypothetical protein (VIMSS) | compare |
| b3349 | slyD | +0.7 | 3.6 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b1049 | mdoH | +0.7 | 4.5 | glucosyltransferase MdoH (NCBI) | compare |
| b1187 | fadR | +0.7 | 2.4 | fatty acid metabolism regulator (NCBI) | compare |
| b1758 | b1758 | +0.7 | 1.1 | putative cytochrome oxidase (VIMSS) | compare |
| b4513 | kdpF | +0.7 | 1.5 | potassium ion accessory transporter subunit (NCBI) | compare |
| b1151 | ymfO | +0.7 | 2.7 | e14 prophage; conserved protein (RefSeq) | compare |
| b0494 | tesA | +0.7 | 2.9 | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 (NCBI) | compare |
| b1480 | sra | +0.7 | 1.1 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b2502 | ppx | +0.7 | 3.9 | exopolyphosphatase (NCBI) | compare |
| b0785 | moaE | +0.7 | 4.1 | molybdopterin synthase, large subunit (NCBI) | compare |
| b0764 | modB | +0.7 | 3.0 | molybdate ABC transporter permease protein (NCBI) | compare |