Experiment set53S692 for Pseudomonas putida KT2440

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PP_1428 -4.7 -3.2 Sigma factor AlgU negative regulatory protein compare
PP_0184 -4.1 -2.8 Argininosuccinate lyase compare
PP_0951 -4.0 -8.1 Ribosome hibernation promoting factor compare
PP_3484 -3.8 -2.6 Response regulator receiver protein compare
PP_5155 -3.8 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1985 -3.7 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_4909 -3.5 -2.4 phosphoserine phosphatase compare
PP_1088 -3.5 -4.1 Argininosuccinate synthase compare
PP_5097 -3.4 -6.6 homoserine O-acetyltransferase compare
PP_3511 -3.4 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_0417 -3.4 -10.8 Anthranilate synthase component 1 compare
PP_1381 -3.4 -1.0 4-carboxymuconolactone decarboxylase compare
PP_2152 -3.4 -2.7 glycerophosphoryl diester phosphodiesterase compare
PP_1995 -3.3 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -3.3 -9.5 Transaldolase compare
PP_1778 -3.3 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4678 -3.2 -10.0 Ketol-acid reductoisomerase compare
PP_4505 -3.2 -3.8 Sensor histidine kinase compare
PP_5652 -3.2 -2.1 conserved protein of unknown function, phage origin compare
PP_2646 -3.2 -2.6 conserved protein of unknown function compare
PP_5110 -3.2 -1.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0293 -3.2 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5145 -3.2 -8.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0022 -3.2 -1.0 hypothetical protein compare
PP_0420 -3.2 -7.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1779 -3.1 -3.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1986 -3.0 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_1988 -3.0 -6.7 3-isopropylmalate dehydrogenase compare
PP_2645 -3.0 -7.5 magnesium transporter, ATP-dependent compare
PP_5098 -3.0 -4.5 methionine biosynthesis protein MetW compare
PP_3821 -2.9 -9.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0395 -2.9 -9.1 putative type IV piliation protein compare
PP_2309 -2.8 -1.2 conserved protein of unknown function compare
PP_4143 -2.8 -3.3 conserved protein of unknown function compare
PP_2001 -2.8 -7.5 O-succinylhomoserine sulfhydrylase compare
PP_0397 -2.8 -11.8 protein kinase compare
PP_5128 -2.8 -7.4 Dihydroxy-acid dehydratase compare
PP_2820 -2.7 -1.7 HTH-type transcriptional regulator nfxB compare
PP_0547 -2.7 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4337 -2.6 -4.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4591 -2.6 -2.5 Ribonuclease D compare
PP_0421 -2.6 -6.6 Anthranilate phosphoribosyltransferase compare
PP_4696 -2.6 -3.1 Nitrogen regulation protein NR(I) compare
PP_5185 -2.6 -2.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2217 -2.5 -2.3 enoyl-CoA hydratase compare
PP_0966 -2.5 -7.6 Histidinol dehydrogenase compare
PP_1430 -2.5 -6.1 putative periplasmic serine endoprotease DegP-like compare
PP_1553 -2.5 -1.4 conserved protein of unknown function compare
PP_0292 -2.5 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0396 -2.4 -9.1 conserved protein of unknown function compare
PP_2280 -2.4 -1.7 conserved protein of unknown function compare
PP_5289 -2.4 -1.7 Acetylglutamate kinase compare
PP_0185 -2.4 -8.6 Positive alginate biosynthesis regulatory protein compare
PP_4058 -2.4 -2.8 1,4-alpha-glucan branching enzyme compare
PP_4679 -2.4 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0949 -2.4 -1.6 putative ATP-binding protein UPF0042 compare
PP_3530 -2.3 -3.9 putative S-ureidoglycine aminohydrolase compare
PP_4680 -2.3 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -2.3 -4.2 Indole-3-glycerol phosphate synthase compare
PP_4890 -2.3 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4122 -2.3 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1860 -2.2 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_1328 -2.2 -1.9 Protein MraZ compare
PP_4517 -2.2 -1.8 conserved protein of unknown function compare
PP_4060 -2.2 -9.9 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3487 -2.2 -2.6 conserved exported protein of unknown function compare
PP_5609 -2.2 -2.0 conserved protein of unknown function compare
PP_2348 -2.2 -4.2 Sensor histidine kinase compare
PP_1025 -2.2 -9.1 2-isopropylmalate synthase compare
PP_0965 -2.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -2.1 -4.8 Imidazoleglycerol-phosphate dehydratase compare
PP_4936 -2.1 -5.7 O-antigen polymerase compare
PP_1912 -2.1 -3.1 Phosphate acyltransferase compare
PP_2214 -2.1 -2.0 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3580 -2.1 -1.8 conserved protein of unknown function compare
PP_0290 -2.0 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5303 -2.0 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0086 -2.0 -1.7 conserved protein of unknown function compare
PP_4726 -2.0 -1.4 Chaperone protein DnaJ compare
PP_1941 -2.0 -4.7 conserved protein of unknown function compare
PP_5347 -2.0 -5.5 pyruvate carboxylase subunit A compare
PP_4387 -2.0 -2.1 conserved exported protein of unknown function compare
PP_0984 -2.0 -2.7 conserved membrane protein of unknown function compare
PP_2121 -2.0 -1.7 putative Lipoprotein compare
PP_4286 -2.0 -4.3 allantoinase compare
PP_1468 -1.9 -1.7 Tyrosine recombinase XerD compare
PP_5705 -1.9 -1.4 protein of unknown function compare
PP_2764 -1.9 -2.7 FMN reductase (NADPH) compare
PP_0083 -1.9 -2.3 tryptophan synthase beta chain compare
PP_5621 -1.9 -1.8 protein of unknown function compare
PP_0874 -1.9 -1.7 conserved protein of unknown function compare
PP_2029 -1.9 -2.3 von Willebrand factor type A domain protein compare
PP_1568 -1.9 -1.0 conserved protein of unknown function compare
PP_4009 -1.8 -3.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_5017 -1.8 -0.8 Sec-independent protein translocase protein TatB compare
PP_1079 -1.8 -4.4 Ornithine carbamoyltransferase compare
PP_1845 -1.8 -3.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_0513 -1.8 -2.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0001 -1.8 -1.1 probable chromosome-partitioning protein compare
PP_1224 -1.8 -2.4 periplasmic subunit of the TolQRA transport system compare
PP_4156 -1.8 -2.1 Transcriptional regulator, LysR family compare
PP_4938 -1.8 -5.7 putative Glycosyl transferase compare
PP_5628 -1.7 -2.3 conserved protein of unknown function compare
PP_3833 -1.7 -3.6 Response regulator compare
PP_0781 -1.7 -2.6 conserved protein of unknown function compare
PP_2088 -1.7 -1.6 RNA polymerase sigma factor SigX compare
PP_1268 -1.7 -1.5 putative HtrA suppressor protein sohA compare
PP_0048 -1.7 -1.0 conserved protein of unknown function compare
PP_5015 -1.7 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4377 -1.6 -3.5 putative Flagellin FlaG compare
PP_2862 -1.6 -4.7 Undecaprenyl-diphosphatase compare
PP_3649 -1.6 -1.1 Transcriptional regulator, GntR family compare
PP_2640 -1.6 -2.3 Acetyltransferase, GNAT family compare
PP_5322 -1.6 -3.1 putative metal ion transporter compare
PP_2737 -1.6 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2437 -1.6 -6.2 putative Acyl-CoA dehydrogenase compare
PP_1164 -1.6 -1.2 Transcriptional regulator, LysR family compare
PP_3930 -1.6 -2.1 conserved exported protein of unknown function compare
PP_2880 -1.6 -1.9 Transcriptional regulator, TetR family compare
PP_5571 -1.6 -1.0 conserved protein of unknown function compare
PP_4004 -1.6 -1.1 DNA translocase FtsK compare
PP_1325 -1.6 -4.1 putative lipoprotein compare
PP_5014 -1.6 -1.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_1390 -1.5 -2.0 conserved exported protein of unknown function compare
PP_1906 -1.5 -2.3 ribosomal large subunit pseudouridine synthase C compare
PP_2307 -1.5 -1.7 conserved protein of unknown function compare
PP_0340 -1.5 -5.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2806 -1.5 -3.5 Transcriptional regulator, TetR family compare
PP_1384 -1.5 -5.7 Probable efflux pump outer membrane protein TtgC compare
PP_4701 -1.5 -0.6 glucose-6-phosphate isomerase compare
PP_2889 -1.5 -2.2 putative Transmembrane regulator PrtR compare
PP_5313 -1.5 -1.8 DNA-binding protein HU-alpha compare
PP_0967 -1.5 -4.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2929 -1.5 -4.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3241 -1.5 -0.9 conserved exported protein of unknown function compare
PP_3532 -1.5 -1.1 Transcriptional regulator, AsnC family compare
PP_4966 -1.5 -1.5 transcriptional regulator of methionine metabolism compare
PP_3098 -1.5 -0.8 conserved protein of unknown function compare
PP_1041 -1.5 -1.2 twin arginine protein export complex subunit compare
PP_3876 -1.5 -1.3 conserved protein of unknown function compare
PP_4073 -1.5 -1.2 conserved exported protein of unknown function compare
PP_1442 -1.5 -2.3 conserved protein of unknown function compare
PP_0607 -1.4 -1.6 putative Type IV pili biogenesis protein FimT compare
PP_4403 -1.4 -3.9 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_3409 -1.4 -1.8 putative Cobalamin biosynthesis protein cobE compare
PP_0995 -1.4 -4.0 conserved membrane protein of unknown function compare
PP_3904 -1.4 -1.1 conserved protein of unknown function compare
PP_2898 -1.4 -1.6 conserved exported protein of unknown function compare
PP_1198 -1.4 -1.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5048 -1.4 -3.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0319 -1.4 -1.0 conserved protein of unknown function compare
PP_0959 -1.4 -1.5 phospholipid ABC transporter compare
PP_4482 -1.4 -2.1 Transcriptional regulator, AraC family compare
PP_1825 -1.4 -2.6 conserved exported protein of unknown function compare
PP_0246 -1.4 -1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_5008 -1.4 -0.6 Poly granule-associated protein compare
PP_0108 -1.4 -2.3 conserved protein of unknown function compare
PP_3002 -1.4 -1.6 shikimate dehydrogenase-related enzyme compare
PP_2773 -1.4 -1.1 conserved protein of unknown function compare
PP_4576 -1.4 -4.2 allophanate hydrolase subunit compare
PP_1451 -1.4 -3.3 conserved exported protein of unknown function compare
PP_4940 -1.4 -3.7 Putative glycosyltransferase compare
PP_0794 -1.4 -2.6 1-phosphofructokinase monomer compare
PP_2132 -1.4 -2.7 Universal stress protein compare
PP_1562 -1.4 -1.2 putative Phage terminase, small subunit compare
PP_2328 -1.4 -1.6 Phosphoadenosine phosphosulfate reductase compare
PP_0105 -1.4 -4.1 Cytochrome C oxidase assembly protein compare
PP_1736 -1.4 -1.6 conserved protein of unknown function compare
PP_2031 -1.4 -1.9 conserved protein of unknown function compare
PP_5491 -1.4 -1.7 conserved protein of unknown function with SEC-C motif domain compare
PP_1309 -1.4 -4.1 conserved exported protein of unknown function compare
PP_1099 -1.3 -1.4 Cold shock protein CapB compare
PP_4288 -1.3 -2.7 ureidoglycolate lyase compare
PP_5075 -1.3 -6.3 glutamate synthase (NADPH) beta subunit compare
PP_0401 -1.3 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_1362 -1.3 -2.0 pyruvate kinase II compare
PP_1187 -1.3 -5.2 sensor protein compare
PP_1756 -1.3 -3.4 conserved exported protein of unknown function compare
PP_3951 -1.3 -3.5 3-oxoadipate CoA-transferase subunit A compare
PP_3378 -1.3 -1.2 putative 2-ketogluconokinase compare
PP_5495 -1.3 -1.5 protein of unknown function compare
PP_2768 -1.3 -2.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1374 -1.3 -2.2 conserved protein of unknown function compare
PP_0413 -1.3 -7.0 Polyamine ABC transporter, permease protein compare
PP_1322 -1.3 -0.7 putative Lipoprotein compare
PP_3048 -1.3 -1.8 conserved protein of unknown function compare
PP_5267 -1.3 -1.0 putative cytochrome c5 compare
PP_2462 -1.3 -1.5 conserved protein of unknown function compare
PP_2153 -1.3 -1.5 conserved protein of unknown function compare
PP_2581 -1.3 -0.9 conserved protein of unknown function compare
PP_5502 -1.2 -1.8 ribosome modulation factor compare
PP_4109 -1.2 -1.5 conserved protein of unknown function compare
PP_4329 -1.2 -1.6 FlhB domain protein compare
PP_4569 -1.2 -1.7 conserved protein of unknown function compare
PP_4943 -1.2 -1.1 putative Glycosyl transferase compare
PP_3318 -1.2 -1.2 conserved protein of unknown function compare
PP_1629 -1.2 -3.4 Protein RecA compare
PP_4695 -1.2 -5.4 Sensory box histidine kinase compare
PP_1787 -1.2 -2.7 conserved protein of unknown function compare
PP_4577 -1.2 -3.1 UPF0271 protein PP_4577 compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms