Experiment set53S692 for Pseudomonas putida KT2440

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Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
PP_3810 +7.4 2.0 conserved protein of unknown function compare
PP_4099 +6.4 33.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +6.2 33.8 Sensor protein GacS compare
PP_1656 +5.9 24.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +5.1 7.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0574 +4.0 14.3 DNA-binding response regulator, LuxR family compare
PP_3874 +3.6 1.5 conserved protein of unknown function compare
PP_0630 +3.5 6.2 DNA gyrase inhibitor YacG compare
PP_0963 +3.5 1.9 putative BolA family protein compare
PP_5735 +3.3 1.8 conserved hypothetical protein compare
PP_3946 +3.1 6.2 HTH-type transcriptional repressor NicR compare
PP_4799 +3.0 1.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3576 +2.9 1.5 putative Transmembrane sensor compare
PP_5701 +2.8 2.2 conserved protein of unknown function compare
PP_4999 +2.7 1.6 dihydroorotase-like protein compare
PP_0805 +2.5 7.9 Outer membrane efflux protein compare
PP_4171 +2.4 7.5 conserved exported protein of unknown function compare
PP_1352 +2.4 2.2 UPF0234 protein PP_1352 compare
PP_1829 +2.4 1.7 Hydrolase, alpha/beta fold family compare
PP_2290 +2.4 1.6 conserved protein of unknown function compare
PP_0806 +2.4 17.5 putative Surface adhesion protein compare
PP_5253 +2.3 1.8 Arylesterase compare
PP_2345 +2.3 3.2 conserved exported protein of unknown function compare
PP_2044 +2.3 2.3 conserved inner membrane protein of unknown function compare
PP_3359 +2.3 4.7 putative Hydroxycinnamic acid degradation regulator compare
PP_2433 +2.3 2.0 conserved protein of unknown function compare
PP_4693 +2.3 2.6 RNA polymerase-binding transcription factor DksA compare
PP_4964 +2.3 1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4018 +2.2 2.0 Acetyltransferase, GNAT family compare
PP_4723 +2.2 1.5 Carbamoyl-phosphate synthase large chain compare
PP_1008 +2.2 2.6 RNA polymerase subunit sigma-24 compare
PP_4724 +2.1 1.4 Carbamoyl-phosphate synthase small chain compare
PP_0803 +2.1 8.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1344 +2.1 2.1 conserved protein of unknown function compare
PP_0856 +2.1 3.8 conserved lipoprotein of unknown function compare
PP_1632 +2.1 1.9 conserved protein of unknown function compare
PP_2633 +2.1 1.3 conserved protein of unknown function compare
PP_1691 +2.0 1.7 conserved protein of unknown function compare
PP_5038 +2.0 2.1 conserved lipoprotein of unknown function compare
PP_0804 +2.0 12.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2360 +2.0 1.5 putative type 1 pili subunit CsuA/B protein compare
PP_2231 +1.9 2.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0063 +1.9 2.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5717 +1.9 2.5 conserved protein of unknown function compare
PP_2907 +1.9 2.3 DNA-binding response regulator compare
PP_4213 +1.8 2.1 putative dipeptidase compare
PP_1045 +1.8 2.1 Type II secretion pathway protein XcpP compare
PP_2000 +1.8 1.6 amidophosphoribosyl transferase compare
PP_5274 +1.7 1.7 conserved protein of unknown function compare
PP_5456 +1.7 1.6 conserved protein of unknown function compare
PP_1214 +1.7 2.2 putative transcriptional regulatory protein compare
PP_4951 +1.7 1.7 Drug resistance transporter, EmrB/QacA family compare
PP_2404 +1.7 2.5 conserved exported protein of unknown function compare
PP_5541 +1.7 1.7 conserved protein of unknown function compare
PP_0182 +1.7 2.3 conserved protein of unknown function compare
PP_4952 +1.7 2.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3603 +1.6 5.2 Transcriptional regulator, GntR family compare
PP_3286 +1.6 7.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4311 +1.6 2.8 putative D-amino acid dehydrogenase 2 small subunit compare
PP_0914 +1.6 6.4 GGDEF domain protein compare
PP_4874 +1.6 1.2 50S ribosomal protein L9 compare
PP_0516 +1.6 1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_3055 +1.6 1.9 Pyocin R2_PP, tail formation protein compare
PP_5671 +1.6 2.2 conserved protein of unknown function compare
PP_4237 +1.6 1.4 periplasmic protein disulfide isomerase compare
PP_5583 +1.6 1.3 conserved protein of unknown function compare
PP_3771 +1.5 1.5 conserved protein of unknown function compare
PP_5329 +1.5 1.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0339 +1.5 1.0 Pyruvate dehydrogenase E1 component compare
PP_1113 +1.5 4.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4424 +1.4 1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1410 +1.4 1.4 conserved protein of unknown function compare
PP_2054 +1.4 1.9 putative DNA-binding transcriptional regulator compare
PP_3050 +1.4 2.3 conserved protein of unknown function compare
PP_2429 +1.4 1.1 putative Membrane protein compare
PP_1764 +1.4 2.3 Phosphoglycolate phosphatase 2 compare
PP_0493 +1.4 1.7 selenocysteine synthase compare
PP_0524 +1.4 1.8 putative Periplasmic cobalamin-binding protein HutB compare
PP_5449 +1.4 2.9 conserved exported protein of unknown function compare
PP_2615 +1.4 1.6 hemolysin-coregulated protein compare
PP_1559 +1.3 2.5 Holin compare
PP_2693 +1.3 1.2 putative Dipeptidase compare
PP_0379 +1.3 1.4 Coenzyme PQQ synthesis protein B compare
PP_5225 +1.3 1.2 frataxin compare
PP_4047 +1.3 2.7 conserved protein of unknown function compare
PP_0989 +1.3 2.0 glycine cleavage system H protein 1 compare
PP_0725 +1.3 3.0 conserved hypothetical TPR repeat protein compare
PP_0028 +1.3 2.7 conserved hypothetical protein compare
PP_5054 +1.3 1.8 glutaredoxin 3 compare
PP_2083 +1.3 2.8 putative Lipase compare
PP_1834 +1.3 1.7 conserved protein of unknown function compare
PP_3333 +1.3 2.2 conserved protein of unknown function compare
PP_1556 +1.3 1.5 conserved protein of unknown function compare
PP_3760 +1.2 3.9 putative methyltransferase compare
PP_5489 +1.2 1.2 conserved protein of unknown function compare
PP_3539 +1.2 1.8 putative Transcriptional regulator compare
PP_2537 +1.2 1.9 conserved protein of unknown function compare
PP_4855 +1.2 1.5 Osmotically-inducible lipoprotein OsmE compare
PP_4100 +1.2 3.9 Transcriptional regulator, Cro/CI family compare
PP_t13 +1.2 2.5 tRNA-Lys compare
PP_1051 +1.2 1.4 Type II secretion pathway protein XcpV compare
PP_2921 +1.2 2.1 conserved protein of unknown function compare
PP_4013 +1.2 2.0 MutT/nudix family protein compare
PP_1096 +1.2 1.7 putative electron transport complex protein compare
PP_4556 +1.2 1.2 conserved protein of unknown function compare
PP_5324 +1.2 1.2 Response regulator compare
PP_5SB +1.2 1.7 5S ribosomal RNA compare
PP_3019 +1.2 2.8 Carbon-nitrogen hydrolase family protein compare
PP_2841 +1.2 1.7 Site-specific recombinase, phage integrase family compare
PP_1523 +1.2 2.0 conserved protein of unknown function compare
PP_4271 +1.2 1.3 conserved protein of unknown function compare
PP_1836 +1.2 1.1 putative metal transporter, ZIP family compare
PP_1491 +1.2 3.0 CheW domain protein compare
PP_2018 +1.2 2.0 adhesin-associated BNR repeat protein (from data) compare
PP_5020 +1.2 3.0 putative methyl-accepting chemotaxis protein compare
PP_2677 +1.2 0.9 conserved exported protein of unknown function compare
PP_2509 +1.2 1.2 conserved protein of unknown function compare
PP_5168 +1.2 1.2 sulfate/thiosulfate import ATP-binding protein compare
PP_2074 +1.2 1.8 Transcriptional regulator, LysR family compare
PP_2101 +1.1 1.7 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_0094 +1.1 2.5 5'-nucleotidase compare
PP_0264 +1.1 3.6 Sensor histidine kinase compare
PP_2873 +1.1 1.4 conserved protein of unknown function, UPF0145 family compare
PP_5359 +1.1 2.0 CobW/P47K family protein compare
PP_5478 +1.1 2.0 conserved protein of unknown function compare
PP_5125 +1.1 1.7 Formamidopyrimidine-DNA glycosylase compare
PP_2441 +1.1 1.5 conserved protein of unknown function compare
PP_5085 +1.1 5.3 malic enzyme B compare
PP_5623 +1.1 2.1 conserved membrane protein of unknown function compare
PP_2442 +1.1 0.8 conserved protein of unknown function, DUF480 family compare
PP_4038 +1.1 3.2 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_2832 +1.1 2.2 galactose-binding protein regulator compare
PP_1623 +1.1 1.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_4534 +1.1 1.9 conserved protein of unknown function compare
PP_3362 +1.1 1.0 Transcriptional regulator, AsnC family compare
PP_4308 +1.1 2.1 Transcriptional regulator, AsnC family compare
PP_1927 +1.1 1.7 putative Arsenical resistance protein ArsH compare
PP_4778 +1.1 1.6 23S rRNA pseudouridine 2457 synthase compare
PP_4054 +1.1 1.7 conserved protein of unknown function compare
PP_3121 +1.1 1.0 transcriptional regulator, LysR family compare
PP_2178 +1.1 2.2 glutamate-putrescine ligase compare
PP_2220 +1.1 2.3 C4-type zinc finger protein, DksA/TraR family compare
PP_2110 +1.1 1.5 putative ribosomal large subunit pseudouridine synthase compare
PP_2459 +1.1 1.3 ribose pyranase compare
PP_4734 +1.1 4.1 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_5177 +1.1 2.7 spermidine/putrescine ABC transporter - permease subunit compare
PP_0632 +1.1 1.4 leader peptidase/N-methyltransferase compare
PP_0259 +1.1 3.0 purine nucleotidase compare
PP_0973 +1.1 2.6 Nucleoid-associated protein PP_0973 compare
PP_3294 +1.1 1.2 Universal stress protein family compare
PP_3863 +1.1 2.3 putative Phage tail protein compare
PP_3817 +1.0 1.4 Polyamine ABC transporter, ATP-binding protein compare
PP_2879 +1.0 2.7 conserved exported protein of unknown function compare
PP_1002 +1.0 1.8 arginine/ornithine antiporter compare
PP_3417 +1.0 2.4 D-gluconate transporter compare
PP_4135 +1.0 2.3 conserved protein of unknown function compare
PP_5328 +1.0 0.7 putative phosphate transport system permease protein compare
PP_1528 +1.0 0.9 conserved protein of unknown function compare
PP_3208 +1.0 1.8 Oxidoreductase, Pdr/VanB family compare
PP_1561 +1.0 2.2 putative Phage holin compare
PP_1564 +1.0 1.4 conserved exported protein of unknown function compare
PP_2725 +1.0 1.5 Protease PfpI compare
PP_3614 +1.0 2.1 conserved membrane protein of unknown function compare
PP_5073 +1.0 1.6 conserved exported protein of unknown function compare
PP_5668 +1.0 2.3 conserved membrane protein of unknown function compare
PP_0742 +1.0 2.7 conserved exported protein of unknown function compare
PP_3355 +1.0 2.9 Beta-ketothiolase compare
PP_2066 +1.0 4.1 Transcriptional regulator, GntR family compare
PP_2481 +1.0 1.5 conserved protein of unknown function compare
PP_5232 +1.0 0.9 conserved protein of unknown function compare
PP_1030 +1.0 2.5 conserved protein of unknown function compare
PP_5706 +1.0 1.5 Sec translocation complex - SecG subunit compare
PP_4625 +1.0 1.6 anti-holin regulator of holin CidA compare
PP_3145 +1.0 1.3 conserved protein of unknown function compare
PP_4705 +1.0 1.6 Glyoxalase compare
PP_1479 +1.0 2.1 HicB protein compare
PP_3880 +1.0 1.1 conserved exported protein of unknown function compare
PP_0025 +1.0 1.0 hypothetical protein compare
PP_5639 +1.0 1.7 conserved exported protein of unknown function compare
PP_0360 +1.0 1.8 Molybdate transport regulator compare
PP_0703 +1.0 1.6 putative Transmembrane sensor compare
PP_5423 +1.0 1.3 conserved membrane protein of unknown function compare
PP_5572 +1.0 1.8 protein of unknown function compare
PP_4233 +1.0 1.7 putative Oxidoreductase, small subunit compare
PP_3412 +0.9 2.0 DNA-binding response regulator, LuxR family compare
PP_3621 +0.9 1.3 vanillin dehydrogenase, iorA-like component (from data) compare
PP_1774 +0.9 1.4 conserved exported protein of unknown function compare
PP_1009 +0.9 1.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5479 +0.9 2.1 transcriptional regulator HTH, LysR family compare
PP_0372 +0.9 1.8 Acetylornithine aminotransferase 2 compare
PP_4804 +0.9 0.6 RlpA-like lipoprotein compare
PP_2883 +0.9 0.8 conserved protein of unknown function compare
PP_2160 +0.9 1.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5448 +0.9 1.4 conserved protein of unknown function compare
PP_4609 +0.9 1.8 conserved membrane protein of unknown function compare
PP_3258 +0.9 1.2 conserved protein of unknown function compare
PP_5039 +0.9 1.3 conserved protein of unknown function compare
PP_1733 +0.9 0.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_4805 +0.9 2.5 membrane-bound lytic murein transglycosylase B compare
PP_1569 +0.9 1.5 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas putida KT2440

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms