| | gene | name | fitness | t score | description | |
|---|
| b1936 | intG | +1.5 | 2.3 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1085 | b1085 | +1.5 | 4.5 | orf, hypothetical protein (VIMSS) | compare |
| b1246 | oppD | +1.2 | 8.7 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1245 | oppC | +1.1 | 8.2 | oligopeptide transporter subunit (NCBI) | compare |
| b1244 | oppB | +1.1 | 7.7 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b1247 | oppF | +1.1 | 6.0 | oligopeptide transporter subunit (NCBI) | compare |
| b1243 | oppA | +1.1 | 7.6 | oligopeptide transporter subunit (NCBI) | compare |
| b3261 | fis | +0.9 | 2.6 | DNA-binding protein Fis (NCBI) | compare |
| b1765 | ydjA | +0.9 | 1.4 | predicted oxidoreductase (NCBI) | compare |
| b0929 | ompF | +0.8 | 6.5 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b2007 | yeeX | +0.8 | 1.8 | conserved protein (RefSeq) | compare |
| b2114 | metG | +0.8 | 2.6 | methionyl-tRNA synthetase (NCBI) | compare |
| b1961 | dcm | +0.7 | 1.7 | DNA cytosine methylase (NCBI) | compare |
| b4585 | sroB | +0.7 | 1.8 | Novel sRNA, function unknown (RefSeq) | compare |
| b1591 | b1591 | +0.7 | 2.0 | putative oxidoreductase component (VIMSS) | compare |
| b4603 | rseX | +0.7 | 0.9 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2688 | gshA | +0.7 | 4.9 | glutamate--cysteine ligase (NCBI) | compare |
| b0955 | ycbZ | +0.7 | 5.5 | predicted peptidase (NCBI) | compare |
| b2947 | gshB | +0.7 | 2.6 | glutathione synthetase (NCBI) | compare |
| b4545 | ypdJ | +0.7 | 2.4 | no description | compare |
| b1257 | yciE | +0.6 | 0.4 | hypothetical protein (NCBI) | compare |
| b0464 | acrR | +0.6 | 5.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1583 | ynfB | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b0864 | artP | +0.6 | 2.7 | arginine transporter subunit (NCBI) | compare |
| b1882 | cheY | +0.6 | 0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b4426 | isrA | +0.6 | 2.4 | unknown RNA (NCBI) | compare |
| b3778 | rep | +0.6 | 3.9 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b0232 | yafN | +0.6 | 0.6 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1090 | plsX | +0.6 | 2.3 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b4133 | cadC | +0.6 | 5.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b1818 | manY | +0.6 | 1.3 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b2659 | b2659 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0858 | ybjO | +0.6 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b2346 | vacJ | +0.6 | 4.5 | predicted lipoprotein (NCBI) | compare |
| b0802 | ybiJ | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b3443 | yrhA | +0.6 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1613 | manA | +0.6 | 1.4 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b0310 | ykgH | +0.6 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b2217 | rcsB | +0.6 | 4.2 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3146 | yraL | +0.5 | 4.3 | predicted methyltransferase (NCBI) | compare |
| b0065 | yabI | +0.5 | 3.6 | conserved inner membrane protein (NCBI) | compare |
| b3192 | yrbC | +0.5 | 4.6 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1179 | ycgL | +0.5 | 1.3 | conserved protein (NCBI) | compare |
| b1628 | rsxB | +0.5 | 1.7 | electron transport complex protein RnfB (NCBI) | compare |
| b3979 | thrT | +0.5 | 0.4 | tRNA-Thr (NCBI) | compare |
| b4163 | glyV | +0.5 | 1.1 | tRNA-Gly (NCBI) | compare |
| b1642 | slyA | +0.5 | 2.3 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4203 | rplI | +0.5 | 2.8 | 50S ribosomal protein L9 (NCBI) | compare |
| b2749 | ygbE | +0.5 | 3.5 | conserved inner membrane protein (NCBI) | compare |
| b0965 | b0965 | +0.5 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b2469 | narQ | +0.5 | 3.6 | sensory histidine kinase in two-component regulatory system with NarP (NarL) (NCBI) | compare |
| b2236 | yfaE | +0.5 | 2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1582 | ynfA | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b3977 | tyrU | +0.5 | 0.8 | tRNA-Tyr (NCBI) | compare |
| b4642 | yoeD | +0.5 | 2.0 | no description | compare |
| b4402 | yjjY | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b0247 | ykfG | +0.5 | 1.4 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1831 | proQ | +0.5 | 1.8 | putative solute/DNA competence effector (NCBI) | compare |
| b1355 | b1355 | +0.5 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b2071 | yegJ | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b3194 | yrbE | +0.5 | 4.1 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1630 | rsxD | +0.5 | 2.4 | electron transport complex protein RnfD (NCBI) | compare |
| b0685 | ybfE | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1954 | dsrA | +0.5 | 2.4 | regulatory antisense RNA (NCBI) | compare |
| b3191 | yrbB | +0.5 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b0759 | galE | +0.5 | 3.1 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b1159 | mcrA | +0.5 | 0.9 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b1279 | yciS | +0.5 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b1627 | rsxA | +0.5 | 2.6 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1253 | yciA | +0.5 | 1.7 | predicted hydrolase (NCBI) | compare |
| b1696 | ydiP | +0.5 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1492 | gadC | +0.5 | 3.2 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b4041 | plsB | +0.5 | 1.6 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1160 | elbA | +0.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b1165 | ymgA | +0.5 | 0.5 | hypothetical protein (NCBI) | compare |
| b3523 | yhjE | +0.5 | 3.9 | predicted transporter (NCBI) | compare |
| b3193 | yrbD | +0.4 | 3.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1600 | mdtJ | +0.4 | 1.1 | multidrug efflux system transporter (NCBI) | compare |
| b2684 | mprA | +0.4 | 2.4 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b2642 | yfjW | +0.4 | 0.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3495 | uspA | +0.4 | 3.8 | universal stress global response regulator (NCBI) | compare |
| b3195 | yrbF | +0.4 | 3.7 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3929 | rraA | +0.4 | 3.2 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b3206 | npr | +0.4 | 2.2 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1841 | yobA | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b1482 | osmC | +0.4 | 1.4 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b1334 | fnr | +0.4 | 1.0 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1607 | ydgC | +0.4 | 1.2 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.2 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b2003 | yeeT | +0.4 | 1.7 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b0782 | moaB | +0.4 | 1.0 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b2450 | yffS | +0.4 | 1.4 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1608 | rstA | +0.4 | 2.2 | DNA-binding response regulator in two-component regulatory system with RstB (RefSeq) | compare |
| b1949 | fliQ | +0.4 | 1.1 | flagellar biosynthesis protein Q (NCBI) | compare |
| b2846 | yqeH | +0.4 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b3397 | nudE | +0.4 | 2.9 | ADP-ribose diphosphatase (NCBI) | compare |
| b1919 | yedO | +0.4 | 1.9 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b2303 | folX | +0.4 | 3.0 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b2272 | yfbM | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b0364 | yaiS | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1726 | yniB | +0.4 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b3688 | yidQ | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1530 | marR | +0.4 | 1.3 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3095 | yqjA | +0.4 | 2.6 | conserved inner membrane protein (NCBI) | compare |
| b0131 | panD | +0.4 | 2.2 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b2012 | yeeD | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2078 | baeS | +0.4 | 2.7 | sensory histidine kinase in two-component regulatory system with BaeR (NCBI) | compare |
| b1709 | btuD | +0.4 | 0.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b0178 | hlpA | +0.4 | 2.2 | periplasmic chaperone (NCBI) | compare |
| b0661 | miaB | +0.3 | 2.8 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b1777 | b1777 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2668 | ygaP | +0.3 | 2.6 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b1480 | sra | +0.3 | 0.9 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1821 | b1821 | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0340 | cynS | +0.3 | 1.8 | cyanate hydratase (NCBI) | compare |
| b2291 | yfbR | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3423 | glpR | +0.3 | 2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4509 | ylcG | +0.3 | 1.4 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2502 | ppx | +0.3 | 2.7 | exopolyphosphatase (NCBI) | compare |
| b4519 | icdC | +0.3 | 2.1 | no description | compare |
| b3890 | yiiF | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2204 | napH | +0.3 | 2.2 | quinol dehydrogenase membrane component (NCBI) | compare |
| b3512 | GadE | +0.3 | 1.8 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b3427 | yzgL | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4606 | ypfM | +0.3 | 1.8 | hypothetical protein (RefSeq) | compare |
| b1150 | ymfR | +0.3 | 0.6 | e14 prophage; predicted protein (NCBI) | compare |
| b3466 | yhhL | +0.3 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b1306 | pspC | +0.3 | 1.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b2229 | b2229 | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1558 | cspF | +0.3 | 1.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b1409 | ynbB | +0.3 | 0.6 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b1970 | yedX | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1048 | mdoG | +0.3 | 2.2 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b4590 | ybfK | +0.3 | 0.4 | hypothetical protein (RefSeq) | compare |
| b4462 | ygaQ | +0.3 | 0.9 | hypothetical protein (RefSeq) | compare |
| b2212 | alkB | +0.3 | 1.7 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b0730 | mngR | +0.3 | 0.7 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1848 | yebG | +0.3 | 0.9 | conserved protein regulated by LexA (NCBI) | compare |
| b2948 | yqgE | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4559 | yjdO | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3101 | yqjF | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1104 | ycfL | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b0841 | ybjG | +0.3 | 2.1 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b4453 | ldrD | +0.3 | 1.4 | toxic polypeptide, small (NCBI) | compare |
| b3973 | birA | +0.3 | 1.1 | biotin--protein ligase (NCBI) | compare |
| b2903 | gcvP | +0.3 | 2.9 | glycine dehydrogenase (NCBI) | compare |
| b2444 | yffM | +0.3 | 1.3 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b3043 | ygiL | +0.3 | 1.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0236 | prfH | +0.3 | 1.7 | peptide chain release factor 2 (NCBI) | compare |
| b1362 | rzpR | +0.3 | 1.2 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b4173 | hflX | +0.3 | 2.0 | predicted GTPase (NCBI) | compare |
| b0357 | yaiN | +0.3 | 0.7 | putative alpha helix chain (VIMSS) | compare |
| b0122 | yacC | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0778 | bioD | +0.3 | 1.5 | dethiobiotin synthetase (NCBI) | compare |
| b1606 | folM | +0.3 | 2.1 | short chain dehydrogenase (NCBI) | compare |
| b2667 | ygaV | +0.3 | 2.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4640 | yoeG | +0.3 | 1.1 | no description | compare |
| b4596 | yciZ | +0.3 | 0.7 | hypothetical protein (RefSeq) | compare |
| b2625 | yfjI | +0.3 | 0.8 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2826 | ppdA | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b3602 | yibL | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b4391 | yjjK | +0.3 | 2.4 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0603 | ybdO | +0.3 | 0.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3500 | gor | +0.3 | 0.6 | glutathione reductase (NCBI) | compare |
| b0389 | yaiA | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1250 | kch | +0.3 | 1.9 | voltage-gated potassium channel (NCBI) | compare |
| b2314 | dedD | +0.3 | 1.3 | putative lipoprotein (VIMSS) | compare |
| b3627 | rfaI | +0.3 | 2.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3180 | yhbY | +0.3 | 1.5 | predicted RNA-binding protein (NCBI) | compare |
| b2343 | b2343 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1814 | sdaA | +0.3 | 1.2 | L-serine deaminase I (NCBI) | compare |
| b1890 | motA | +0.3 | 1.9 | flagellar motor protein MotA (NCBI) | compare |
| b4295 | yjhU | +0.3 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0535 | fimZ | +0.3 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2681 | ygaY | +0.3 | 2.5 | predicted transporter (pseudogene) (RefSeq) | compare |
| b4227 | ytfQ | +0.3 | 1.5 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b3888 | yiiD | +0.3 | 2.4 | predicted acetyltransferase (NCBI) | compare |
| b0958 | sulA | +0.3 | 1.5 | SOS cell division inhibitor (NCBI) | compare |
| b2308 | hisQ | +0.3 | 2.3 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b1632 | rsxE | +0.3 | 2.0 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4503 | yafF | +0.3 | 0.5 | no description | compare |
| b1121 | ycfZ | +0.3 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b1550 | b1550 | +0.3 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b0018 | mokC | +0.3 | 0.7 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4151 | frdD | +0.3 | 1.5 | fumarate reductase subunit D (NCBI) | compare |
| b2483 | hyfC | +0.3 | 1.8 | hydrogenase 4 membrane subunit (VIMSS) | compare |
| b0746 | valZ | +0.3 | 1.2 | tRNA-Val (NCBI) | compare |
| b1650 | nemA | +0.3 | 1.5 | N-ethylmaleimide reductase, FMN-linked (NCBI) | compare |
| b2006 | yeeW | +0.3 | 1.6 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b1108 | ycfP | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2083 | yegZ | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b2156 | lysP | +0.3 | 2.2 | lysine transporter (NCBI) | compare |
| b2421 | cysM | +0.3 | 1.2 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1920 | fliY | +0.3 | 0.7 | cystine transporter subunit (NCBI) | compare |
| b0375 | yaiV | +0.3 | 1.7 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b3148 | yraN | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b0190 | yaeQ | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b4190 | yjfP | +0.3 | 2.0 | predicted hydrolase (NCBI) | compare |
| b0546 | ybcM | +0.3 | 1.7 | DLP12 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1007 | b1007 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |