| | gene | name | fitness | t score | description | |
|---|
| b2512 | yfgL | -4.2 | -8.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2808 | gcvA | -4.2 | -4.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0463 | acrA | -3.6 | -14.2 | multidrug efflux system (NCBI) | compare |
| b3183 | obgE | -3.3 | -2.2 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b4242 | mgtA | -3.2 | -3.1 | magnesium transporter (NCBI) | compare |
| b3860 | dsbA | -3.1 | -9.0 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1185 | dsbB | -3.0 | -2.9 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1855 | lpxM | -2.9 | -6.1 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b4702 | mgtL | -2.8 | -1.9 | regulatory leader peptide for mgtA (NCBI) | compare |
| b4171 | miaA | -2.7 | -4.7 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b2188 | yejM | -2.6 | -12.2 | predicted hydrolase, inner membrane (NCBI) | compare |
| b0683 | fur | -2.6 | -1.7 | ferric uptake regulator (NCBI) | compare |
| b3844 | fre | -2.5 | -10.0 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1865 | nudB | -2.5 | -2.3 | dATP pyrophosphohydrolase (NCBI) | compare |
| b0462 | acrB | -2.3 | -19.0 | multidrug efflux system protein (NCBI) | compare |
| b0145 | dksA | -2.2 | -4.2 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3052 | rfaE | -2.2 | -1.5 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0632 | dacA | -2.2 | -9.6 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b0439 | lon | -2.1 | -4.0 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3979 | thrT | -2.0 | -0.9 | tRNA-Thr (NCBI) | compare |
| b0438 | clpX | -1.9 | -2.8 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b0564 | appY | -1.8 | -1.0 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b1438 | ydcQ | -1.8 | -3.4 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b0400 | phoR | -1.8 | -10.4 | sensory histidine kinase in two-component regulatory system with PhoB (NCBI) | compare |
| b2617 | smpA | -1.8 | -5.4 | small membrane protein A (VIMSS) | compare |
| b2501 | ppk | -1.8 | -10.1 | polyphosphate kinase (NCBI) | compare |
| b4414 | tff | -1.8 | -2.9 | unknown RNA (NCBI) | compare |
| b0080 | fruR | -1.7 | -7.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4005 | purD | -1.7 | -10.3 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b2318 | truA | -1.7 | -3.3 | tRNA pseudouridine synthase A (NCBI) | compare |
| b0222 | lpcA | -1.7 | -1.9 | phosphoheptose isomerase (NCBI) | compare |
| b2312 | purF | -1.6 | -6.0 | amidophosphoribosyltransferase (NCBI) | compare |
| b2330 | yfcB | -1.6 | -2.7 | putative adenine-specific methylase (VIMSS) | compare |
| b4375 | prfC | -1.6 | -6.5 | peptide chain release factor 3 (NCBI) | compare |
| b3493 | pitA | -1.5 | -7.7 | phosphate transporter, low-affinity (NCBI) | compare |
| b0688 | pgm | -1.5 | -3.1 | phosphoglucomutase (NCBI) | compare |
| b4006 | purH | -1.5 | -9.6 | bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) | compare |
| b2313 | cvpA | -1.5 | -3.8 | membrane protein required for colicin V production (NCBI) | compare |
| b0437 | clpP | -1.5 | -1.0 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b4201 | priB | -1.4 | -3.3 | primosomal replication protein N (NCBI) | compare |
| b3792 | wzxE | -1.4 | -2.8 | O-antigen translocase (NCBI) | compare |
| b4179 | vacB | -1.4 | -4.3 | putative enzyme (VIMSS) | compare |
| b3621 | rfaC | -1.4 | -2.2 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b0522 | purK | -1.4 | -7.4 | phosphoribosylaminoimidazole carboxylase (NCBI) | compare |
| b0049 | apaH | -1.3 | -1.2 | diadenosinetetraphosphatase (NCBI) | compare |
| b1235 | rssB | -1.3 | -4.4 | response regulator of RpoS (NCBI) | compare |
| b0200 | gmhB | -1.3 | -0.9 | hypothetical protein (NCBI) | compare |
| b4146 | yjeK | -1.3 | -2.1 | predicted lysine aminomutase (NCBI) | compare |
| b3870 | glnA | -1.3 | -3.4 | glutamine synthetase (NCBI) | compare |
| b2071 | yegJ | -1.3 | -2.5 | hypothetical protein (NCBI) | compare |
| b4654 | yjdQ | -1.3 | -4.7 | no description | compare |
| b0741 | pal | -1.3 | -0.9 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0053 | surA | -1.3 | -1.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b0226 | dinJ | -1.3 | -4.0 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1677 | lpp | -1.2 | -1.9 | murein lipoprotein (NCBI) | compare |
| b3916 | pfkA | -1.2 | -3.3 | 6-phosphofructokinase (NCBI) | compare |
| b1192 | ldcA | -1.2 | -2.2 | L,D-carboxypeptidase A (NCBI) | compare |
| b1332 | ynaJ | -1.2 | -1.0 | predicted inner membrane protein (NCBI) | compare |
| b4203 | rplI | -1.2 | -4.6 | 50S ribosomal protein L9 (NCBI) | compare |
| b3162 | deaD | -1.2 | -4.9 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b1304 | pspA | -1.2 | -3.1 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b3261 | fis | -1.2 | -1.8 | DNA-binding protein Fis (NCBI) | compare |
| b3620 | rfaF | -1.2 | -3.0 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0142 | folK | -1.2 | -0.8 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2285 | nuoE | -1.1 | -2.5 | NADH dehydrogenase subunit E (NCBI) | compare |
| b2912 | ygfA | -1.1 | -2.2 | putative ligase (VIMSS) | compare |
| b3838 | tatB | -1.1 | -4.5 | sec-independent translocase (NCBI) | compare |
| b4202 | rpsR | -1.1 | -0.7 | 30S ribosomal protein S18 (NCBI) | compare |
| b0051 | ksgA | -1.1 | -4.5 | dimethyladenosine transferase (NCBI) | compare |
| b2287 | nuoB | -1.1 | -3.0 | NADH dehydrogenase subunit B (NCBI) | compare |
| b0726 | sucA | -1.1 | -4.2 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b0767 | ybhE | -1.1 | -3.6 | 6-phosphogluconolactonase (NCBI) | compare |
| b4701 | sokX | -1.1 | -1.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1676 | pykF | -1.1 | -4.2 | pyruvate kinase (NCBI) | compare |
| b3630 | rfaP | -1.1 | -5.3 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b4481 | rffT | -1.1 | -3.5 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0386 | proC | -1.1 | -2.3 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b1871 | yecP | -1.1 | -4.7 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b3199 | yrbK | -1.1 | -2.0 | hypothetical protein (NCBI) | compare |
| b1850 | eda | -1.0 | -1.6 | keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) | compare |
| b2494 | yfgC | -1.0 | -7.5 | predicted peptidase (NCBI) | compare |
| b3164 | pnp | -1.0 | -1.9 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1837 | yebW | -1.0 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3204 | ptsN | -1.0 | -4.1 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b4180 | rlmB | -1.0 | -6.9 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b2784 | relA | -1.0 | -7.3 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b3545 | proK | -1.0 | -2.9 | tRNA-Pro (NCBI) | compare |
| b3849 | trkH | -1.0 | -7.3 | potassium transporter (NCBI) | compare |
| b1109 | ndh | -1.0 | -2.8 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b4480 | hdfR | -1.0 | -5.4 | transcriptional regulator HdfR (NCBI) | compare |
| b1231 | tyrT | -0.9 | -1.1 | tRNA-Tyr (NCBI) | compare |
| b2499 | purM | -0.9 | -3.1 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b4000 | hupA | -0.9 | -5.2 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b4174 | hflK | -0.9 | -6.7 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b0928 | aspC | -0.9 | -4.6 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b0149 | mrcB | -0.9 | -5.9 | penicillin-binding protein 1b (NCBI) | compare |
| b0143 | pcnB | -0.9 | -4.2 | poly(A) polymerase I (VIMSS) | compare |
| b2905 | gcvT | -0.8 | -4.5 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b0729 | sucD | -0.8 | -3.1 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b2620 | smpB | -0.8 | -0.9 | SsrA-binding protein (NCBI) | compare |
| b3791 | rffA | -0.8 | -3.1 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4025 | pgi | -0.8 | -5.6 | glucose-6-phosphate isomerase (NCBI) | compare |
| b3706 | trmE | -0.8 | -2.5 | tRNA modification GTPase (NCBI) | compare |
| b2278 | nuoL | -0.8 | -5.2 | NADH dehydrogenase subunit L (NCBI) | compare |
| b2576 | srmB | -0.8 | -2.7 | ATP-dependent RNA helicase (NCBI) | compare |
| b1291 | sapD | -0.8 | -1.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3781 | trxA | -0.8 | -3.0 | thioredoxin 1 (VIMSS) | compare |
| b2082 | ogrK | -0.8 | -2.5 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b1550 | b1550 | -0.8 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b0032 | carA | -0.8 | -2.7 | carbamoyl-phosphate synthase small subunit (NCBI) | compare |
| b1982 | amn | -0.8 | -6.3 | AMP nucleosidase (NCBI) | compare |
| b3652 | recG | -0.8 | -5.4 | ATP-dependent DNA helicase (NCBI) | compare |
| b2279 | nuoK | -0.8 | -1.1 | NADH dehydrogenase subunit K (NCBI) | compare |
| b2329 | aroC | -0.8 | -3.6 | chorismate synthase (NCBI) | compare |
| b1160 | elbA | -0.8 | -0.7 | hypothetical protein (NCBI) | compare |
| b2493 | yfgO | -0.8 | -5.6 | predicted inner membrane protein (NCBI) | compare |
| b4175 | hflC | -0.8 | -5.0 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1429 | tehA | -0.8 | -1.0 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b3631 | rfaG | -0.8 | -5.3 | glucosyltransferase I (NCBI) | compare |
| b2277 | nuoM | -0.8 | -3.8 | NADH dehydrogenase subunit M (NCBI) | compare |
| b3728 | pstS | -0.8 | -2.6 | phosphate transporter subunit (NCBI) | compare |
| b3494 | yhiO | -0.8 | -5.0 | universal stress protein UspB (NCBI) | compare |
| b0908 | aroA | -0.8 | -4.3 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b3761 | trpT | -0.8 | -1.8 | tRNA-Trp (NCBI) | compare |
| b0059 | hepA | -0.7 | -6.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b1613 | manA | -0.7 | -1.1 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b3082 | ygjM | -0.7 | -0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3867 | hemN | -0.7 | -5.6 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b2284 | nuoF | -0.7 | -2.4 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b2846 | yqeH | -0.7 | -0.4 | orf, hypothetical protein (VIMSS) | compare |
| b3977 | tyrU | -0.7 | -0.8 | tRNA-Tyr (NCBI) | compare |
| b1709 | btuD | -0.7 | -0.8 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3741 | gidA | -0.7 | -1.7 | glucose-inhibited division protein A (NCBI) | compare |
| b1084 | rne | -0.7 | -2.5 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b1686 | ydiI | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b2288 | nuoA | -0.7 | -2.4 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b2276 | nuoN | -0.7 | -3.0 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b3869 | glnL | -0.7 | -4.4 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | compare |
| b3398 | yrfF | -0.7 | -2.1 | predicted inner membrane protein (NCBI) | compare |
| b3790 | rffC | -0.7 | -2.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2017 | yefM | -0.7 | -0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1255 | yciC | -0.7 | -3.6 | hypothetical protein (NCBI) | compare |
| b0481 | ybaK | -0.7 | -2.7 | hypothetical protein (NCBI) | compare |
| b1290 | sapF | -0.7 | -0.9 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0926 | ycbK | -0.7 | -3.9 | hypothetical protein (NCBI) | compare |
| b2557 | purL | -0.7 | -4.8 | phosphoribosylformylglycinamidine synthase (NCBI) | compare |
| b4218 | ytfL | -0.6 | -4.8 | predicted inner membrane protein (NCBI) | compare |
| b2414 | cysK | -0.6 | -4.5 | cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) | compare |
| b0782 | moaB | -0.6 | -1.3 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b3414 | gntY | -0.6 | -3.0 | predicted gluconate transport associated protein (NCBI) | compare |
| b2683 | ygaH | -0.6 | -2.8 | predicted inner membrane protein (NCBI) | compare |
| b3289 | rsmB | -0.6 | -5.2 | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | compare |
| b3229 | sspA | -0.6 | -2.4 | stringent starvation protein A (NCBI) | compare |
| b1107 | nagZ | -0.6 | -2.4 | beta-hexosaminidase (NCBI) | compare |
| b0677 | nagA | -0.6 | -2.8 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b0912 | ihfB | -0.6 | -0.4 | integration host factor subunit beta (NCBI) | compare |
| b2421 | cysM | -0.6 | -2.1 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b0019 | nhaA | -0.6 | -4.4 | pH-dependent sodium/proton antiporter (NCBI) | compare |
| b4243 | yjgF | -0.6 | -3.4 | orf, hypothetical protein (VIMSS) | compare |
| b0724 | sdhB | -0.6 | -2.9 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b0889 | lrp | -0.6 | -1.4 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1368 | ynaA | -0.6 | -1.9 | Rac prophage; predicted tail protein (RefSeq) | compare |
| b4647 | mokA | -0.6 | -0.7 | no description | compare |
| b4245 | pyrB | -0.6 | -1.7 | aspartate carbamoyltransferase catalytic subunit (NCBI) | compare |
| b0888 | trxB | -0.6 | -2.3 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b2280 | nuoJ | -0.6 | -3.0 | NADH dehydrogenase subunit J (NCBI) | compare |
| b3825 | pldB | -0.6 | -5.0 | lysophospholipase L(2) (NCBI) | compare |
| b2951 | yggS | -0.6 | -2.0 | predicted enzyme (NCBI) | compare |
| b1161 | ycgX | -0.6 | -0.6 | hypothetical protein (NCBI) | compare |
| b2569 | lepA | -0.6 | -2.0 | GTP-binding protein LepA (NCBI) | compare |
| b3396 | mrcA | -0.6 | -4.4 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b0523 | purE | -0.6 | -1.9 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b2258 | b2258 | -0.6 | -1.0 | putative transport/receptor protein (VIMSS) | compare |
| b3497 | yhiQ | -0.6 | -3.9 | predicted SAM-dependent methyltransferase (NCBI) | compare |
| b0088 | murD | -0.6 | -1.0 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b3260 | dusB | -0.6 | -3.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b3619 | rfaD | -0.6 | -0.8 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3742 | mioC | -0.6 | -3.2 | flavodoxin (NCBI) | compare |
| b0406 | tgt | -0.6 | -3.8 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b1114 | mfd | -0.6 | -4.1 | transcription-repair coupling factor (NCBI) | compare |
| b1063 | yceB | -0.6 | -1.7 | predicted lipoprotein (NCBI) | compare |
| b1292 | sapC | -0.6 | -0.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3863 | polA | -0.5 | -0.3 | DNA polymerase I (NCBI) | compare |
| b0723 | sdhA | -0.5 | -4.3 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b3375 | yhfR | -0.5 | -3.7 | putative transcriptional regulator (VIMSS) | compare |
| b0882 | clpA | -0.5 | -3.9 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b0125 | hpt | -0.5 | -3.1 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b1346 | ydaQ | -0.5 | -0.6 | orf, hypothetical protein (VIMSS) | compare |
| b3764 | yifE | -0.5 | -3.2 | hypothetical protein (NCBI) | compare |
| b2903 | gcvP | -0.5 | -4.6 | glycine dehydrogenase (NCBI) | compare |
| b1148 | ymfM | -0.5 | -2.2 | e14 prophage; predicted protein (NCBI) | compare |
| b3021 | ygiT | -0.5 | -1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4472 | yhdP | -0.5 | -5.0 | conserved membrane protein, predicted transporter (NCBI) | compare |
| b3965 | trmA | -0.5 | -4.2 | tRNA (uracil-5-)-methyltransferase (NCBI) | compare |
| b3388 | damX | -0.5 | -4.6 | hypothetical protein (NCBI) | compare |
| b3806 | cyaA | -0.5 | -2.7 | adenylate cyclase (NCBI) | compare |
| b1286 | rnb | -0.5 | -1.0 | exoribonuclease II (NCBI) | compare |
| b1358 | ydaT | -0.5 | -0.7 | Rac prophage; predicted protein (NCBI) | compare |
| b0840 | deoR | -0.5 | -2.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2283 | nuoG | -0.5 | -3.2 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |