| | gene | name | fitness | t score | description | |
|---|
| b2741 | rpoS | +1.3 | 10.3 | RNA polymerase sigma factor (NCBI) | compare |
| b2934 | cmtB | +1.3 | 1.8 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2620 | smpB | +1.3 | 2.3 | SsrA-binding protein (NCBI) | compare |
| b1936 | intG | +1.3 | 2.0 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3210 | arcB | +1.3 | 9.2 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1361 | ydaW | +1.0 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1085 | b1085 | +1.0 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b3387 | dam | +0.9 | 6.3 | DNA adenine methylase (NCBI) | compare |
| b3844 | fre | +0.8 | 5.0 | NAD(P)H-flavin reductase (NCBI) | compare |
| b4313 | fimE | +0.8 | 6.4 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1600 | mdtJ | +0.8 | 2.0 | multidrug efflux system transporter (NCBI) | compare |
| b4426 | isrA | +0.7 | 2.2 | unknown RNA (NCBI) | compare |
| b1954 | dsrA | +0.7 | 3.7 | regulatory antisense RNA (NCBI) | compare |
| b3146 | yraL | +0.7 | 4.8 | predicted methyltransferase (NCBI) | compare |
| b4590 | ybfK | +0.7 | 1.1 | hypothetical protein (RefSeq) | compare |
| b0082 | mraW | +0.7 | 4.2 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2217 | rcsB | +0.7 | 4.6 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1823 | cspC | +0.7 | 1.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b3163 | nlpI | +0.6 | 3.2 | hypothetical protein (NCBI) | compare |
| b4593 | ymgI | +0.6 | 1.0 | hypothetical protein (RefSeq) | compare |
| b4133 | cadC | +0.6 | 5.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b2846 | yqeH | +0.6 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b2272 | yfbM | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b4246 | pyrL | +0.6 | 0.9 | pyrBI operon leader peptide (NCBI) | compare |
| b4050 | yjbO | +0.6 | 3.7 | orf, hypothetical protein (VIMSS) | compare |
| b0131 | panD | +0.6 | 2.4 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b1179 | ycgL | +0.6 | 1.8 | conserved protein (NCBI) | compare |
| b3198 | kdsC | +0.6 | 2.3 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2684 | mprA | +0.5 | 3.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1253 | yciA | +0.5 | 1.6 | predicted hydrolase (NCBI) | compare |
| b3523 | yhjE | +0.5 | 4.7 | predicted transporter (NCBI) | compare |
| b2829 | ptsP | +0.5 | 5.1 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1919 | yedO | +0.5 | 1.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b0240 | crl | +0.5 | 4.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4571 | wbbL | +0.5 | 1.9 | no description | compare |
| b2531 | iscR | +0.5 | 1.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0382 | yaiB | +0.5 | 4.1 | hypothetical protein (NCBI) | compare |
| b1355 | b1355 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1269 | rluB | +0.5 | 2.9 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b2110 | yehC | +0.5 | 1.2 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2229 | b2229 | +0.5 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4594 | ymgJ | +0.5 | 2.0 | hypothetical protein (RefSeq) | compare |
| b1233 | ychJ | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | +0.5 | 3.9 | essential cell division protein (NCBI) | compare |
| b3261 | fis | +0.5 | 1.4 | DNA-binding protein Fis (NCBI) | compare |
| b3206 | npr | +0.5 | 3.4 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3512 | GadE | +0.5 | 2.7 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1824 | yobF | +0.5 | 2.7 | hypothetical protein (NCBI) | compare |
| b1493 | gadB | +0.5 | 0.9 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4585 | sroB | +0.5 | 1.2 | Novel sRNA, function unknown (RefSeq) | compare |
| b1724 | ydiZ | +0.5 | 1.4 | hypothetical protein (NCBI) | compare |
| b1591 | b1591 | +0.5 | 1.5 | putative oxidoreductase component (VIMSS) | compare |
| b3442 | yhhZ | +0.5 | 0.3 | hypothetical protein (NCBI) | compare |
| b1575 | dicB | +0.5 | 1.4 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b1159 | mcrA | +0.5 | 1.0 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b2436 | hemF | +0.5 | 3.3 | coproporphyrinogen III oxidase (NCBI) | compare |
| b1161 | ycgX | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b1830 | prc | +0.5 | 2.1 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0661 | miaB | +0.5 | 4.2 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3443 | yrhA | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2688 | gshA | +0.5 | 3.0 | glutamate--cysteine ligase (NCBI) | compare |
| b3753 | rbsR | +0.4 | 4.1 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b0955 | ycbZ | +0.4 | 3.5 | predicted peptidase (NCBI) | compare |
| b2236 | yfaE | +0.4 | 2.3 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2286 | nuoC | +0.4 | 2.7 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b1246 | oppD | +0.4 | 3.3 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1186 | nhaB | +0.4 | 3.1 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b1527 | yneK | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1597 | asr | +0.4 | 1.9 | acid shock protein (VIMSS) | compare |
| b3816 | corA | +0.4 | 3.5 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b3755 | yieP | +0.4 | 3.4 | predicted transcriptional regulator (NCBI) | compare |
| b1628 | rsxB | +0.4 | 2.1 | electron transport complex protein RnfB (NCBI) | compare |
| b3213 | gltD | +0.4 | 3.3 | glutamate synthase, 4Fe-4S protein, small subunit (NCBI) | compare |
| b2285 | nuoE | +0.4 | 1.3 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1613 | manA | +0.4 | 1.0 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b3349 | slyD | +0.4 | 3.0 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b4532 | yncN | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0736 | ybgC | +0.4 | 2.1 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b0357 | yaiN | +0.4 | 1.2 | putative alpha helix chain (VIMSS) | compare |
| b1380 | ldhA | +0.4 | 1.9 | D-lactate dehydrogenase (NCBI) | compare |
| b4222 | ytfP | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1553 | ydfP | +0.4 | 1.1 | Qin prophage; conserved protein (NCBI) | compare |
| b1670 | ydhU | +0.4 | 2.3 | predicted cytochrome (NCBI) | compare |
| b0685 | ybfE | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1679 | sufE | +0.4 | 2.2 | cysteine desufuration protein SufE (NCBI) | compare |
| b1247 | oppF | +0.4 | 2.8 | oligopeptide transporter subunit (NCBI) | compare |
| b3884 | yihW | +0.4 | 2.3 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b1382 | ynbE | +0.4 | 1.2 | predicted lipoprotein (NCBI) | compare |
| b0821 | ybiU | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b0232 | yafN | +0.4 | 0.3 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4513 | kdpF | +0.4 | 1.9 | potassium ion accessory transporter subunit (NCBI) | compare |
| b2947 | gshB | +0.4 | 1.6 | glutathione synthetase (NCBI) | compare |
| b1335 | ogt | +0.4 | 2.0 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b4071 | nrfB | +0.4 | 1.7 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b4552 | yrhC | +0.4 | 0.6 | no description | compare |
| b1642 | slyA | +0.4 | 1.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4692 | oweE | +0.4 | 2.0 | no description | compare |
| b2512 | yfgL | +0.4 | 1.8 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b4397 | creA | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b2369 | evgA | +0.4 | 1.7 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b0849 | grxA | +0.4 | 1.7 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b2659 | b2659 | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3292 | zntR | +0.4 | 1.9 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b4101 | phnG | +0.4 | 1.4 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1761 | gdhA | +0.4 | 2.2 | glutamate dehydrogenase (NCBI) | compare |
| b1007 | b1007 | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0696 | kdpC | +0.3 | 1.4 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b3341 | rpsG | +0.3 | 0.7 | 30S ribosomal protein S7 (NCBI) | compare |
| b4559 | yjdO | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0858 | ybjO | +0.3 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b3181 | greA | +0.3 | 1.7 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1492 | gadC | +0.3 | 2.6 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1992 | cobS | +0.3 | 0.9 | cobalamin synthase (NCBI) | compare |
| b0425 | panE | +0.3 | 2.8 | 2-dehydropantoate 2-reductase (NCBI) | compare |
| b1623 | add | +0.3 | 1.6 | adenosine deaminase (NCBI) | compare |
| b1422 | ydcI | +0.3 | 1.8 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1557 | cspB | +0.3 | 1.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b2284 | nuoF | +0.3 | 1.5 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1950 | fliR | +0.3 | 1.5 | flagellar biosynthesis protein R (NCBI) | compare |
| b3495 | uspA | +0.3 | 2.7 | universal stress global response regulator (NCBI) | compare |
| b2083 | yegZ | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1625 | ydgT | +0.3 | 2.3 | predicted regulator (NCBI) | compare |
| b0503 | ybbB | +0.3 | 1.5 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b2749 | ygbE | +0.3 | 2.4 | conserved inner membrane protein (NCBI) | compare |
| b2377 | yfdY | +0.3 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b1218 | chaC | +0.3 | 2.2 | regulatory protein for cation transport (RefSeq) | compare |
| b2998 | yghW | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1999 | yeeP | +0.3 | 2.1 | putative histone (VIMSS) | compare |
| b1346 | ydaQ | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2968 | yghD | +0.3 | 2.0 | predicted secretion pathway M-type protein, membrane anchored (NCBI) | compare |
| b1482 | osmC | +0.3 | 1.0 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b2586 | yfiM | +0.3 | 1.6 | predicted protein (RefSeq) | compare |
| b2859 | ygeO | +0.3 | 1.0 | hypothetical protein (RefSeq) | compare |
| b3658 | selC | +0.3 | 1.5 | tRNA-Sec (NCBI) | compare |
| b2349 | intS | +0.3 | 2.4 | CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) | compare |
| b1182 | hlyE | +0.3 | 0.3 | hemolysin E (VIMSS) | compare |
| b3676 | yidH | +0.3 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b1481 | b1481 | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1330 | ynaI | +0.3 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b1958 | yedI | +0.3 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b1692 | ydiB | +0.3 | 1.4 | quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b0178 | hlpA | +0.3 | 1.8 | periplasmic chaperone (NCBI) | compare |
| b0122 | yacC | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2212 | alkB | +0.3 | 1.6 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b1025 | ycdT | +0.3 | 0.8 | predicted diguanylate cyclase (NCBI) | compare |
| b4536 | yobH | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b1726 | yniB | +0.3 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b2007 | yeeX | +0.3 | 0.6 | conserved protein (RefSeq) | compare |
| b1278 | pgpB | +0.3 | 1.2 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b2502 | ppx | +0.3 | 2.1 | exopolyphosphatase (NCBI) | compare |
| b0987 | ymcD | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1244 | oppB | +0.3 | 2.0 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b0432 | cyoA | +0.3 | 2.4 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b2485 | hyfE | +0.3 | 1.9 | hydrogenase 4, membrane subunit (NCBI) | compare |
| b3212 | gltB | +0.3 | 2.7 | glutamate synthase, large subunit (NCBI) | compare |
| b0120 | speD | +0.3 | 2.4 | S-adenosylmethionine decarboxylase proenzyme (NCBI) | compare |
| b1524 | yneH | +0.3 | 0.6 | predicted glutaminase (NCBI) | compare |
| b1630 | rsxD | +0.3 | 1.4 | electron transport complex protein RnfD (NCBI) | compare |
| b0782 | moaB | +0.3 | 0.7 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b0616 | citE | +0.3 | 2.0 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b4441 | glmY | +0.3 | 0.9 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b2204 | napH | +0.3 | 1.5 | quinol dehydrogenase membrane component (NCBI) | compare |
| b0136 | yadK | +0.3 | 1.4 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0976 | hyaE | +0.3 | 1.7 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b3769 | ilvM | +0.3 | 1.2 | acetolactate synthase II, small subunit (NCBI) | compare |
| b3871 | bipA | +0.3 | 2.3 | GTP-binding protein (NCBI) | compare |
| b2782 | chpA | +0.3 | 1.8 | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease (NCBI) | compare |
| b2571 | rseB | +0.3 | 2.2 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b1594 | dgsA | +0.3 | 1.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1674 | ydhY | +0.3 | 2.1 | predicted 4Fe-4S ferridoxin-type protein (NCBI) | compare |
| b0851 | nfsA | +0.3 | 1.3 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b1394 | paaG | +0.3 | 1.0 | enoyl-CoA hydratase (NCBI) | compare |
| b1900 | araG | +0.3 | 1.4 | fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1743 | spy | +0.3 | 1.0 | envelope stress induced periplasmic protein (NCBI) | compare |
| b4650 | yibS | +0.3 | 1.0 | no description | compare |
| b0925 | ycbB | +0.3 | 2.2 | predicted carboxypeptidase (NCBI) | compare |
| b1258 | yciF | +0.3 | 0.5 | hypothetical protein (NCBI) | compare |
| b4048 | yjbM | +0.3 | 0.6 | hypothetical protein (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.2 | no description | compare |
| b2421 | cysM | +0.3 | 0.9 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b3672 | ivbL | +0.3 | 1.2 | ilvB operon leader peptide (NCBI) | compare |
| b2635 | ypjK | +0.3 | 0.7 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1728 | ydjM | +0.3 | 0.9 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b1681 | sufD | +0.3 | 1.9 | component of SufBCD complex (NCBI) | compare |
| b1409 | ynbB | +0.3 | 0.5 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b0535 | fimZ | +0.3 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0989 | cspH | +0.3 | 0.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b3071 | yqjI | +0.3 | 1.2 | predicted transcriptional regulator (NCBI) | compare |
| b0279 | yagM | +0.3 | 0.2 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b4049 | dusA | +0.3 | 2.2 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b1465 | narV | +0.3 | 0.8 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b3075 | ebgR | +0.3 | 1.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3888 | yiiD | +0.3 | 2.0 | predicted acetyltransferase (NCBI) | compare |
| b2294 | b2294 | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1245 | oppC | +0.2 | 1.8 | oligopeptide transporter subunit (NCBI) | compare |
| b2195 | ccmG | +0.2 | 0.7 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b0753 | ybgS | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b0468 | ybaN | +0.2 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b3169 | nusA | +0.2 | 0.5 | transcription elongation factor NusA (NCBI) | compare |
| b0469 | apt | +0.2 | 1.8 | adenine phosphoribosyltransferase (NCBI) | compare |