| | gene | name | fitness | t score | description | |
|---|
| b1709 | btuD | +1.2 | 2.3 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2741 | rpoS | +1.2 | 9.3 | RNA polymerase sigma factor (NCBI) | compare |
| b3341 | rpsG | +1.1 | 2.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b3206 | npr | +1.0 | 5.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1085 | b1085 | +1.0 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b1150 | ymfR | +1.0 | 2.0 | e14 prophage; predicted protein (NCBI) | compare |
| b1823 | cspC | +0.9 | 3.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b2829 | ptsP | +0.9 | 8.4 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2217 | rcsB | +0.9 | 6.7 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1954 | dsrA | +0.8 | 3.3 | regulatory antisense RNA (NCBI) | compare |
| b1628 | rsxB | +0.8 | 3.5 | electron transport complex protein RnfB (NCBI) | compare |
| b1600 | mdtJ | +0.8 | 2.2 | multidrug efflux system transporter (NCBI) | compare |
| b2688 | gshA | +0.8 | 5.7 | glutamate--cysteine ligase (NCBI) | compare |
| b1726 | yniB | +0.8 | 2.6 | predicted inner membrane protein (NCBI) | compare |
| b0082 | mraW | +0.8 | 4.5 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0730 | mngR | +0.8 | 1.8 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b3443 | yrhA | +0.8 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0955 | ycbZ | +0.8 | 5.8 | predicted peptidase (NCBI) | compare |
| b2659 | b2659 | +0.8 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1936 | intG | +0.7 | 1.0 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3753 | rbsR | +0.7 | 6.6 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b4505 | insX | +0.7 | 1.9 | predicted IS protein (RefSeq) | compare |
| b4676 | yoaK | +0.6 | 0.8 | expressed protein (RefSeq) | compare |
| b4133 | cadC | +0.6 | 5.8 | DNA-binding transcriptional activator (NCBI) | compare |
| b4590 | ybfK | +0.6 | 1.0 | hypothetical protein (RefSeq) | compare |
| b4215 | ytfI | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b0661 | miaB | +0.6 | 5.2 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b2947 | gshB | +0.6 | 2.7 | glutathione synthetase (NCBI) | compare |
| b1824 | yobF | +0.6 | 3.3 | hypothetical protein (NCBI) | compare |
| b0240 | crl | +0.6 | 4.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1380 | ldhA | +0.6 | 2.6 | D-lactate dehydrogenase (NCBI) | compare |
| b1295 | ymjA | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1613 | manA | +0.5 | 1.0 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1179 | ycgL | +0.5 | 2.0 | conserved protein (NCBI) | compare |
| b3181 | greA | +0.5 | 3.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1335 | ogt | +0.5 | 2.4 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b1765 | ydjA | +0.5 | 0.8 | predicted oxidoreductase (NCBI) | compare |
| b3146 | yraL | +0.5 | 3.5 | predicted methyltransferase (NCBI) | compare |
| b1849 | purT | +0.5 | 3.5 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b1573 | ydfC | +0.5 | 1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b0388 | aroL | +0.5 | 3.6 | shikimate kinase II (NCBI) | compare |
| b3261 | fis | +0.5 | 1.3 | DNA-binding protein Fis (NCBI) | compare |
| b3816 | corA | +0.5 | 4.0 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1642 | slyA | +0.5 | 2.0 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1627 | rsxA | +0.5 | 2.7 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b4557 | yidD | +0.5 | 2.6 | hypothetical protein (NCBI) | compare |
| b2903 | gcvP | +0.5 | 4.1 | glycine dehydrogenase (NCBI) | compare |
| b2528 | iscA | +0.5 | 1.2 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b3766 | ilvL | +0.5 | 2.1 | ilvG operon leader peptide (NCBI) | compare |
| b2904 | gcvH | +0.5 | 1.8 | glycine cleavage system protein H (NCBI) | compare |
| b2136 | yohD | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b0965 | b0965 | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1346 | ydaQ | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4227 | ytfQ | +0.4 | 2.3 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b0864 | artP | +0.4 | 2.2 | arginine transporter subunit (NCBI) | compare |
| b1891 | flhC | +0.4 | 2.3 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b3929 | rraA | +0.4 | 3.3 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b2007 | yeeX | +0.4 | 0.8 | conserved protein (RefSeq) | compare |
| b0303 | ykgI | +0.4 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b0382 | yaiB | +0.4 | 3.2 | hypothetical protein (NCBI) | compare |
| b2258 | b2258 | +0.4 | 1.0 | putative transport/receptor protein (VIMSS) | compare |
| b3523 | yhjE | +0.4 | 3.6 | predicted transporter (NCBI) | compare |
| b2061 | wzb | +0.4 | 1.6 | protein-tyrosine phosphatase (NCBI) | compare |
| b1492 | gadC | +0.4 | 2.6 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1839 | yebY | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0535 | fimZ | +0.4 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4071 | nrfB | +0.4 | 1.8 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1233 | ychJ | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b4450 | arcZ | +0.4 | 2.1 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0696 | kdpC | +0.4 | 1.2 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b2212 | alkB | +0.4 | 2.4 | oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions (NCBI) | compare |
| b3516 | gadX | +0.4 | 3.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2684 | mprA | +0.4 | 1.8 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1259 | yciG | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1630 | rsxD | +0.4 | 2.0 | electron transport complex protein RnfD (NCBI) | compare |
| b1505 | ydeT | +0.4 | 0.9 | hypothetical protein (RefSeq) | compare |
| b1324 | tpx | +0.4 | 2.3 | thiol peroxidase (NCBI) | compare |
| b1246 | oppD | +0.4 | 2.9 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1582 | ynfA | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2929 | yggD | +0.4 | 2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3166 | truB | +0.4 | 2.5 | tRNA pseudouridine synthase B (NCBI) | compare |
| b1591 | b1591 | +0.4 | 0.9 | putative oxidoreductase component (VIMSS) | compare |
| b1194 | ycgR | +0.4 | 2.1 | protein involved in flagellar function (NCBI) | compare |
| b1754 | b1754 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1013 | ycdC | +0.4 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3512 | GadE | +0.4 | 1.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0263 | afuB | +0.4 | 0.8 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b3858 | yihD | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b4391 | yjjK | +0.4 | 2.8 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2490 | b2490 | +0.4 | 1.4 | putative protein processing element (VIMSS) | compare |
| b1882 | cheY | +0.4 | 0.5 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1400 | paaY | +0.3 | 1.0 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1306 | pspC | +0.3 | 1.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b0998 | torD | +0.3 | 0.8 | chaperone protein TorD (NCBI) | compare |
| b4595 | yciY | +0.3 | 1.4 | hypothetical protein (RefSeq) | compare |
| b3027 | ygiZ | +0.3 | 0.3 | conserved inner membrane protein (NCBI) | compare |
| b3198 | kdsC | +0.3 | 1.3 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b1562 | hokD | +0.3 | 1.5 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b3293 | yhdN | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1743 | spy | +0.3 | 1.6 | envelope stress induced periplasmic protein (NCBI) | compare |
| b4094 | phnN | +0.3 | 1.8 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b1603 | pntA | +0.3 | 1.8 | NAD(P) transhydrogenase subunit alpha (NCBI) | compare |
| b2570 | rseC | +0.3 | 2.3 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b0468 | ybaN | +0.3 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b2650 | ypjC | +0.3 | 0.2 | hypothetical protein (RefSeq) | compare |
| b3366 | nirD | +0.3 | 1.9 | nitrite reductase small subunit (NCBI) | compare |
| b1407 | ydbD | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3468 | yhhN | +0.3 | 3.0 | conserved inner membrane protein (NCBI) | compare |
| b4653 | yicT | +0.3 | 0.7 | no description | compare |
| b3071 | yqjI | +0.3 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b1760 | ynjH | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b2229 | b2229 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4529 | ydbJ | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b2946 | yggJ | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1190 | dadX | +0.3 | 2.0 | alanine racemase (NCBI) | compare |
| b1143 | ymfI | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4049 | dusA | +0.3 | 2.6 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b1448 | yncA | +0.3 | 1.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2637 | yfjT | +0.3 | 1.1 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1138 | ymfE | +0.3 | 0.9 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1278 | pgpB | +0.3 | 1.2 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b1919 | yedO | +0.3 | 1.0 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1334 | fnr | +0.3 | 1.5 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b0560 | nohB | +0.3 | 1.3 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b1010 | ycdK | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2181 | yejG | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1632 | rsxE | +0.3 | 2.5 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b1243 | oppA | +0.3 | 2.1 | oligopeptide transporter subunit (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.1 | no description | compare |
| b3153 | yhbO | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1396 | paaI | +0.3 | 1.8 | predicted thioesterase (NCBI) | compare |
| b4095 | phnM | +0.3 | 2.1 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1186 | nhaB | +0.3 | 2.5 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b1247 | oppF | +0.3 | 2.1 | oligopeptide transporter subunit (NCBI) | compare |
| b4614 | sokA | +0.3 | 1.0 | no description | compare |
| b0357 | yaiN | +0.3 | 0.9 | putative alpha helix chain (VIMSS) | compare |
| b4397 | creA | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b0191 | yaeJ | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b4203 | rplI | +0.3 | 1.6 | 50S ribosomal protein L9 (NCBI) | compare |
| b0713 | ybgL | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b4585 | sroB | +0.3 | 0.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b4235 | pmbA | +0.3 | 2.6 | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | compare |
| b1482 | osmC | +0.3 | 1.0 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b4416 | rybA | +0.3 | 0.8 | unknown RNA (NCBI) | compare |
| b2450 | yffS | +0.3 | 1.1 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b2445 | yffN | +0.3 | 1.7 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b0822 | ybiV | +0.3 | 1.5 | predicted hydrolase (NCBI) | compare |
| b3446 | yrhB | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b0065 | yabI | +0.3 | 1.6 | conserved inner membrane protein (NCBI) | compare |
| b2668 | ygaP | +0.3 | 1.9 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b2349 | intS | +0.3 | 2.0 | CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) | compare |
| b1961 | dcm | +0.3 | 0.6 | DNA cytosine methylase (NCBI) | compare |
| b4594 | ymgJ | +0.3 | 1.1 | hypothetical protein (RefSeq) | compare |
| b1594 | dgsA | +0.3 | 1.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4685 | yrbN | +0.3 | 1.1 | expressed protein (RefSeq) | compare |
| b3495 | uspA | +0.3 | 2.4 | universal stress global response regulator (NCBI) | compare |
| b3658 | selC | +0.3 | 1.3 | tRNA-Sec (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.1 | no description | compare |
| b1244 | oppB | +0.3 | 1.8 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b0068 | tbpA | +0.3 | 1.9 | thiamin transporter subunit (NCBI) | compare |
| b0310 | ykgH | +0.3 | 0.6 | predicted inner membrane protein (NCBI) | compare |
| b4135 | yjdC | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2660 | ygaF | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1245 | oppC | +0.3 | 1.8 | oligopeptide transporter subunit (NCBI) | compare |
| b1218 | chaC | +0.3 | 1.7 | regulatory protein for cation transport (RefSeq) | compare |
| b1382 | ynbE | +0.3 | 0.8 | predicted lipoprotein (NCBI) | compare |
| b2502 | ppx | +0.3 | 2.2 | exopolyphosphatase (NCBI) | compare |
| b1070 | flgN | +0.3 | 0.7 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b2783 | chpR | +0.3 | 1.0 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b1125 | potB | +0.3 | 1.5 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b4695 | ykgT | +0.3 | 0.8 | no description | compare |
| b1139 | lit | +0.3 | 1.6 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b2474 | ypfI | +0.3 | 2.2 | predicted hydrolase (NCBI) | compare |
| b2471 | yffB | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1394 | paaG | +0.3 | 1.1 | enoyl-CoA hydratase (NCBI) | compare |
| b3507 | dctR | +0.3 | 2.3 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b1640 | ydhH | +0.3 | 1.3 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b1077 | flgF | +0.3 | 1.9 | flagellar component of cell-proximal portion of basal-body rod (NCBI) | compare |
| b2448 | yffQ | +0.3 | 0.9 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1890 | motA | +0.3 | 1.6 | flagellar motor protein MotA (NCBI) | compare |
| b1602 | pntB | +0.3 | 1.1 | pyridine nucleotide transhydrogenase (NCBI) | compare |
| b1900 | araG | +0.3 | 1.1 | fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0920 | ycbC | +0.3 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b0792 | ybhR | +0.3 | 1.6 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1949 | fliQ | +0.3 | 1.2 | flagellar biosynthesis protein Q (NCBI) | compare |
| b1696 | ydiP | +0.3 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4684 | yqfG | +0.3 | 1.8 | expressed protein (RefSeq) | compare |
| b1079 | flgH | +0.3 | 1.2 | flagellar L-ring protein precursor H (NCBI) | compare |
| b2346 | vacJ | +0.3 | 1.9 | predicted lipoprotein (NCBI) | compare |
| b1524 | yneH | +0.3 | 0.5 | predicted glutaminase (NCBI) | compare |
| b2377 | yfdY | +0.3 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b1164 | ycgZ | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b2811 | ygdK | +0.2 | 1.4 | predicted Fe-S metabolism protein (NCBI) | compare |
| b1487 | ddpA | +0.2 | 1.6 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b1942 | fliJ | +0.2 | 0.5 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1822 | rrmA | +0.2 | 1.2 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b0616 | citE | +0.2 | 1.5 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b1302 | puuE | +0.2 | 1.4 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b3130 | yhaV | +0.2 | 1.7 | hypothetical protein (NCBI) | compare |
| b3503 | arsC | +0.2 | 1.4 | arsenate reductase (NCBI) | compare |