| | gene | name | fitness | t score | description | |
|---|
| b1085 | b1085 | +1.1 | 4.8 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | +1.1 | 1.7 | predicted oxidoreductase (NCBI) | compare |
| b4603 | rseX | +1.0 | 1.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2741 | rpoS | +1.0 | 6.9 | RNA polymerase sigma factor (NCBI) | compare |
| b3206 | npr | +1.0 | 5.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2829 | ptsP | +0.9 | 8.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1954 | dsrA | +0.9 | 4.9 | regulatory antisense RNA (NCBI) | compare |
| b1150 | ymfR | +0.9 | 1.8 | e14 prophage; predicted protein (NCBI) | compare |
| b1642 | slyA | +0.9 | 4.2 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0955 | ycbZ | +0.8 | 6.8 | predicted peptidase (NCBI) | compare |
| b2007 | yeeX | +0.8 | 1.4 | conserved protein (RefSeq) | compare |
| b2168 | fruK | +0.8 | 1.3 | 1-phosphofructokinase (NCBI) | compare |
| b1823 | cspC | +0.8 | 3.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b2934 | cmtB | +0.8 | 1.0 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3753 | rbsR | +0.8 | 6.8 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2217 | rcsB | +0.8 | 5.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1824 | yobF | +0.7 | 4.3 | hypothetical protein (NCBI) | compare |
| b4585 | sroB | +0.7 | 1.8 | Novel sRNA, function unknown (RefSeq) | compare |
| b1628 | rsxB | +0.7 | 2.2 | electron transport complex protein RnfB (NCBI) | compare |
| b2688 | gshA | +0.7 | 4.8 | glutamate--cysteine ligase (NCBI) | compare |
| b3027 | ygiZ | +0.7 | 0.6 | conserved inner membrane protein (NCBI) | compare |
| b0082 | mraW | +0.6 | 3.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b4133 | cadC | +0.6 | 6.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b4679 | yohP | +0.6 | 2.6 | expressed protein (RefSeq) | compare |
| b1627 | rsxA | +0.6 | 3.3 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b0661 | miaB | +0.6 | 5.2 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b1007 | b1007 | +0.6 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1936 | intG | +0.6 | 0.9 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0240 | crl | +0.6 | 4.4 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2684 | mprA | +0.5 | 3.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3146 | yraL | +0.5 | 3.9 | predicted methyltransferase (NCBI) | compare |
| b2659 | b2659 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0623 | cspE | +0.5 | 2.1 | cold shock protein E (NCBI) | compare |
| b2006 | yeeW | +0.5 | 2.6 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b3198 | kdsC | +0.5 | 1.6 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b0263 | afuB | +0.5 | 1.2 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b1179 | ycgL | +0.5 | 1.4 | conserved protein (NCBI) | compare |
| b1630 | rsxD | +0.5 | 2.8 | electron transport complex protein RnfD (NCBI) | compare |
| b4648 | ysaC | +0.5 | 1.7 | no description | compare |
| b3261 | fis | +0.5 | 1.3 | DNA-binding protein Fis (NCBI) | compare |
| b1573 | ydfC | +0.5 | 1.3 | Qin prophage; predicted protein (RefSeq) | compare |
| b1557 | cspB | +0.5 | 1.1 | Qin prophage; cold shock protein (NCBI) | compare |
| b2444 | yffM | +0.5 | 1.5 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b3443 | yrhA | +0.5 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b2229 | b2229 | +0.5 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b3199 | yrbK | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b4443 | gcvB | +0.5 | 0.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b3929 | rraA | +0.5 | 3.7 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b2903 | gcvP | +0.4 | 3.9 | glycine dehydrogenase (NCBI) | compare |
| b4594 | ymgJ | +0.4 | 1.8 | hypothetical protein (RefSeq) | compare |
| b1841 | yobA | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b3816 | corA | +0.4 | 3.6 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1583 | ynfB | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b3181 | greA | +0.4 | 2.9 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1950 | fliR | +0.4 | 2.1 | flagellar biosynthesis protein R (NCBI) | compare |
| b1818 | manY | +0.4 | 1.8 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3523 | yhjE | +0.4 | 3.7 | predicted transporter (NCBI) | compare |
| b3166 | truB | +0.4 | 3.2 | tRNA pseudouridine synthase B (NCBI) | compare |
| b3977 | tyrU | +0.4 | 0.6 | tRNA-Tyr (NCBI) | compare |
| b1726 | yniB | +0.4 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b0806 | ybiM | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1582 | ynfA | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1540 | ydfH | +0.4 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1607 | ydgC | +0.4 | 1.3 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b3979 | thrT | +0.4 | 0.3 | tRNA-Thr (NCBI) | compare |
| b4049 | dusA | +0.4 | 3.0 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b2369 | evgA | +0.4 | 1.9 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b0388 | aroL | +0.4 | 2.9 | shikimate kinase II (NCBI) | compare |
| b3890 | yiiF | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1138 | ymfE | +0.4 | 1.2 | e14 prophage; predicted inner membrane protein (NCBI) | compare |
| b1357 | ydaS | +0.4 | 1.5 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4066 | yjcF | +0.4 | 0.3 | hypothetical protein (NCBI) | compare |
| b1595 | ynfL | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1492 | gadC | +0.4 | 2.7 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b4595 | yciY | +0.4 | 1.6 | hypothetical protein (RefSeq) | compare |
| b2960 | yggH | +0.4 | 2.5 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b2617 | smpA | +0.4 | 2.0 | small membrane protein A (VIMSS) | compare |
| b1831 | proQ | +0.4 | 2.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1259 | yciG | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4203 | rplI | +0.4 | 2.4 | 50S ribosomal protein L9 (NCBI) | compare |
| b2236 | yfaE | +0.4 | 1.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b1487 | ddpA | +0.4 | 1.8 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b2915 | yqfE | +0.4 | 1.7 | hypothetical protein (RefSeq) | compare |
| b3495 | uspA | +0.4 | 3.4 | universal stress global response regulator (NCBI) | compare |
| b1609 | rstB | +0.4 | 2.3 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b4181 | yjfI | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2743 | pcm | +0.4 | 1.8 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b4100 | phnH | +0.4 | 2.3 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1667 | ydhR | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b1306 | pspC | +0.3 | 1.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b2346 | vacJ | +0.3 | 2.7 | predicted lipoprotein (NCBI) | compare |
| b3028 | mdaB | +0.3 | 2.6 | NADPH quinone reductase (NCBI) | compare |
| b1822 | rrmA | +0.3 | 1.6 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1361 | ydaW | +0.3 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b1358 | ydaT | +0.3 | 0.9 | Rac prophage; predicted protein (NCBI) | compare |
| b1125 | potB | +0.3 | 1.3 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b1743 | spy | +0.3 | 1.3 | envelope stress induced periplasmic protein (NCBI) | compare |
| b2668 | ygaP | +0.3 | 2.3 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b0136 | yadK | +0.3 | 1.6 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4071 | nrfB | +0.3 | 1.4 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b4148 | sugE | +0.3 | 2.0 | suppresses groEL, may be chaperone (VIMSS) | compare |
| b4532 | yncN | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2061 | wzb | +0.3 | 1.2 | protein-tyrosine phosphatase (NCBI) | compare |
| b1669 | ydhT | +0.3 | 1.2 | hypothetical protein (NCBI) | compare |
| b1632 | rsxE | +0.3 | 2.4 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4431 | rprA | +0.3 | 1.0 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b0500 | ybbD | +0.3 | 0.2 | hypothetical protein (RefSeq) | compare |
| b1821 | b1821 | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4536 | yobH | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b4371 | rsmC | +0.3 | 2.6 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1960 | vsr | +0.3 | 1.3 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b4642 | yoeD | +0.3 | 1.0 | no description | compare |
| b0535 | fimZ | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0821 | ybiU | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b0461 | ybaJ | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b1493 | gadB | +0.3 | 0.5 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1758 | b1758 | +0.3 | 0.7 | putative cytochrome oxidase (VIMSS) | compare |
| b1243 | oppA | +0.3 | 2.5 | oligopeptide transporter subunit (NCBI) | compare |
| b4279 | yjhB | +0.3 | 0.2 | putative transport protein (VIMSS) | compare |
| b1218 | chaC | +0.3 | 1.5 | regulatory protein for cation transport (RefSeq) | compare |
| b1948 | fliP | +0.3 | 1.5 | flagellar biosynthesis protein P (NCBI) | compare |
| b0310 | ykgH | +0.3 | 0.7 | predicted inner membrane protein (NCBI) | compare |
| b4653 | yicT | +0.3 | 0.8 | no description | compare |
| b0382 | yaiB | +0.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b2181 | yejG | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3516 | gadX | +0.3 | 2.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2560 | yfhB | +0.3 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1247 | oppF | +0.3 | 2.2 | oligopeptide transporter subunit (NCBI) | compare |
| b4391 | yjjK | +0.3 | 2.4 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b4513 | kdpF | +0.3 | 1.4 | potassium ion accessory transporter subunit (NCBI) | compare |
| b4557 | yidD | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1849 | purT | +0.3 | 1.6 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b1942 | fliJ | +0.3 | 0.9 | flagellar biosynthesis chaperone (NCBI) | compare |
| b2968 | yghD | +0.3 | 1.5 | predicted secretion pathway M-type protein, membrane anchored (NCBI) | compare |
| b3686 | ibpB | +0.3 | 1.9 | heat shock chaperone (NCBI) | compare |
| b3884 | yihW | +0.3 | 1.8 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b4545 | ypdJ | +0.3 | 1.2 | no description | compare |
| b4196 | ulaD | +0.3 | 1.5 | 3-keto-L-gulonate 6-phosphate decarboxylase (NCBI) | compare |
| b1884 | cheR | +0.3 | 1.5 | chemotaxis regulator, protein-glutamate methyltransferase (NCBI) | compare |
| b4370 | leuQ | +0.3 | 0.9 | tRNA-Leu (NCBI) | compare |
| b2637 | yfjT | +0.3 | 1.2 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4450 | arcZ | +0.3 | 1.1 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1186 | nhaB | +0.3 | 2.1 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b0303 | ykgI | +0.3 | 0.3 | orf, hypothetical protein (VIMSS) | compare |
| b3688 | yidQ | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2679 | proX | +0.3 | 1.7 | glycine betaine transporter subunit (NCBI) | compare |
| b3611 | yibN | +0.3 | 1.5 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b1380 | ldhA | +0.3 | 1.1 | D-lactate dehydrogenase (NCBI) | compare |
| b3468 | yhhN | +0.3 | 2.4 | conserved inner membrane protein (NCBI) | compare |
| b4406 | yaeP | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b0982 | yccY | +0.3 | 1.9 | putative phosphatase (VIMSS) | compare |
| b3442 | yhhZ | +0.3 | 0.2 | hypothetical protein (NCBI) | compare |
| b2570 | rseC | +0.3 | 1.8 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b3995 | rsd | +0.3 | 1.9 | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | compare |
| b4095 | phnM | +0.3 | 2.1 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b4376 | osmY | +0.3 | 2.2 | periplasmic protein (NCBI) | compare |
| b2474 | ypfI | +0.3 | 2.3 | predicted hydrolase (NCBI) | compare |
| b0864 | artP | +0.3 | 1.4 | arginine transporter subunit (NCBI) | compare |
| b1172 | ymgG | +0.3 | 1.8 | conserved protein, UPF0757 family (RefSeq) | compare |
| b4694 | yagP | +0.3 | 1.7 | no description | compare |
| b0933 | ssuB | +0.3 | 1.4 | alkanesulfonate transporter subunit (NCBI) | compare |
| b1305 | pspB | +0.3 | 0.8 | phage shock protein B (NCBI) | compare |
| b2141 | yohJ | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1301 | puuB | +0.3 | 2.1 | gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) | compare |
| b1848 | yebG | +0.3 | 0.7 | conserved protein regulated by LexA (NCBI) | compare |
| b1343 | dbpA | +0.3 | 1.8 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b1300 | puuC | +0.3 | 1.3 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | compare |
| b2512 | yfgL | +0.3 | 1.4 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2953 | yggU | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2502 | ppx | +0.3 | 2.1 | exopolyphosphatase (NCBI) | compare |
| b2768 | ygcP | +0.3 | 1.0 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b4050 | yjbO | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4163 | glyV | +0.3 | 0.8 | tRNA-Gly (NCBI) | compare |
| b0232 | yafN | +0.3 | 0.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1921 | fliZ | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2904 | gcvH | +0.3 | 0.6 | glycine cleavage system protein H (NCBI) | compare |
| b2003 | yeeT | +0.3 | 1.6 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b1279 | yciS | +0.3 | 0.6 | conserved inner membrane protein (NCBI) | compare |
| b0946 | ycbW | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2504 | yfgG | +0.3 | 0.6 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1245 | oppC | +0.3 | 2.0 | oligopeptide transporter subunit (NCBI) | compare |
| b0238 | gpt | +0.3 | 1.0 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b2759 | ygcK | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1148 | ymfM | +0.3 | 1.2 | e14 prophage; predicted protein (NCBI) | compare |
| b4135 | yjdC | +0.2 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1640 | ydhH | +0.2 | 1.5 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b1534 | ydeE | +0.2 | 1.6 | predicted transporter (NCBI) | compare |
| b0131 | panD | +0.2 | 1.6 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b3858 | yihD | +0.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b2319 | usg | +0.2 | 1.3 | hypothetical protein (NCBI) | compare |
| b1257 | yciE | +0.2 | 0.1 | hypothetical protein (NCBI) | compare |
| b3889 | yiiE | +0.2 | 0.8 | predicted transcriptional regulator (RefSeq) | compare |
| b3472 | b3472 | +0.2 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b4373 | rimI | +0.2 | 0.8 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b2047 | wcaJ | +0.2 | 1.2 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b2664 | ygaE | +0.2 | 1.9 | putative transcriptional regulator (VIMSS) | compare |
| b2170 | setB | +0.2 | 1.1 | lactose/glucose efflux system (NCBI) | compare |
| b4032 | malG | +0.2 | 1.8 | maltose transporter subunit (NCBI) | compare |
| b1920 | fliY | +0.2 | 0.9 | cystine transporter subunit (NCBI) | compare |
| b2528 | iscA | +0.2 | 0.4 | iron-sulfur cluster assembly protein (NCBI) | compare |