| | gene | name | fitness | t score | description | |
|---|
| b3929 | rraA | +3.7 | 32.8 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1085 | b1085 | +2.7 | 3.8 | orf, hypothetical protein (VIMSS) | compare |
| b2576 | srmB | +2.3 | 9.5 | ATP-dependent RNA helicase (NCBI) | compare |
| b0754 | aroG | +2.1 | 16.8 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | compare |
| b2934 | cmtB | +2.0 | 3.1 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2688 | gshA | +2.0 | 14.7 | glutamate--cysteine ligase (NCBI) | compare |
| b0882 | clpA | +1.8 | 15.2 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b0755 | gpmA | +1.5 | 11.5 | phosphoglyceromutase (NCBI) | compare |
| b4313 | fimE | +1.5 | 11.2 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b2684 | mprA | +1.5 | 5.4 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0388 | aroL | +1.4 | 10.8 | shikimate kinase II (NCBI) | compare |
| b3199 | yrbK | +1.4 | 4.8 | hypothetical protein (NCBI) | compare |
| b1954 | dsrA | +1.3 | 5.4 | regulatory antisense RNA (NCBI) | compare |
| b1642 | slyA | +1.2 | 4.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b3146 | yraL | +1.2 | 8.3 | predicted methyltransferase (NCBI) | compare |
| b3210 | arcB | +1.2 | 8.8 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1831 | proQ | +1.1 | 3.7 | putative solute/DNA competence effector (NCBI) | compare |
| b3198 | kdsC | +1.1 | 4.9 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b0082 | mraW | +1.1 | 7.0 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0955 | ycbZ | +1.1 | 9.3 | predicted peptidase (NCBI) | compare |
| b0830 | yliB | +1.1 | 8.4 | predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b2007 | yeeX | +1.1 | 6.4 | conserved protein (RefSeq) | compare |
| b3162 | deaD | +1.1 | 6.2 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4603 | rseX | +1.0 | 1.3 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1861 | ruvA | +0.9 | 0.9 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b2620 | smpB | +0.9 | 1.6 | SsrA-binding protein (NCBI) | compare |
| b2741 | rpoS | +0.9 | 7.6 | RNA polymerase sigma factor (NCBI) | compare |
| b2217 | rcsB | +0.9 | 6.4 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b1628 | rsxB | +0.9 | 2.6 | electron transport complex protein RnfB (NCBI) | compare |
| b2948 | yqgE | +0.9 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1936 | intG | +0.9 | 1.3 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1482 | osmC | +0.9 | 3.3 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b3206 | npr | +0.9 | 4.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4045 | yjbJ | +0.8 | 2.1 | predicted stress response protein (NCBI) | compare |
| b4552 | yrhC | +0.8 | 1.4 | no description | compare |
| b1269 | rluB | +0.8 | 4.0 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b2947 | gshB | +0.8 | 4.0 | glutathione synthetase (NCBI) | compare |
| b3816 | corA | +0.8 | 5.9 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0832 | yliD | +0.7 | 6.3 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3163 | nlpI | +0.7 | 3.6 | hypothetical protein (NCBI) | compare |
| b0831 | yliC | +0.7 | 4.1 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1108 | ycfP | +0.7 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b3755 | yieP | +0.7 | 5.5 | predicted transcriptional regulator (NCBI) | compare |
| b3753 | rbsR | +0.7 | 6.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2421 | cysM | +0.7 | 4.0 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b0998 | torD | +0.7 | 1.6 | chaperone protein TorD (NCBI) | compare |
| b2829 | ptsP | +0.7 | 6.2 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1492 | gadC | +0.7 | 4.9 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b0829 | gsiA | +0.7 | 5.8 | fused predicted peptide transport subunits of ABC superfamily: ATP-binding components (RefSeq) | compare |
| b2786 | barA | +0.7 | 6.5 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b3628 | rfaB | +0.6 | 5.0 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1573 | ydfC | +0.6 | 1.8 | Qin prophage; predicted protein (RefSeq) | compare |
| b1627 | rsxA | +0.6 | 2.9 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2571 | rseB | +0.6 | 4.4 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b4227 | ytfQ | +0.6 | 2.9 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1630 | rsxD | +0.6 | 2.8 | electron transport complex protein RnfD (NCBI) | compare |
| b1591 | b1591 | +0.6 | 2.1 | putative oxidoreductase component (VIMSS) | compare |
| b1914 | uvrY | +0.6 | 4.1 | response regulator (NCBI) | compare |
| b3676 | yidH | +0.6 | 3.7 | conserved inner membrane protein (NCBI) | compare |
| b0976 | hyaE | +0.6 | 2.7 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b4133 | cadC | +0.6 | 5.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b2570 | rseC | +0.6 | 3.5 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b0122 | yacC | +0.6 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b0705 | ybfL | +0.6 | 0.6 | putative receptor protein (VIMSS) | compare |
| b2911 | ssrS | +0.6 | 1.2 | 6S regulatory RNA (NCBI) | compare |
| b1632 | rsxE | +0.6 | 4.3 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b2618 | b2618 | +0.6 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b4450 | arcZ | +0.6 | 3.5 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1824 | yobF | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b3157 | yhbT | +0.5 | 2.9 | predicted lipid carrier protein (NCBI) | compare |
| b4256 | yjgM | +0.5 | 4.3 | predicted acetyltransferase (NCBI) | compare |
| b0759 | galE | +0.5 | 2.9 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b0240 | crl | +0.5 | 4.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1150 | ymfR | +0.5 | 0.9 | e14 prophage; predicted protein (NCBI) | compare |
| b1558 | cspF | +0.5 | 2.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b2528 | iscA | +0.5 | 1.4 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b3341 | rpsG | +0.5 | 1.3 | 30S ribosomal protein S7 (NCBI) | compare |
| b2136 | yohD | +0.5 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b2749 | ygbE | +0.5 | 4.5 | conserved inner membrane protein (NCBI) | compare |
| b1164 | ycgZ | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b1830 | prc | +0.5 | 2.4 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3349 | slyD | +0.5 | 3.7 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b1187 | fadR | +0.5 | 2.5 | fatty acid metabolism regulator (NCBI) | compare |
| b0382 | yaiB | +0.5 | 3.9 | hypothetical protein (NCBI) | compare |
| b4679 | yohP | +0.5 | 2.4 | expressed protein (RefSeq) | compare |
| b1629 | rsxC | +0.5 | 3.5 | electron transport complex protein RnfC (NCBI) | compare |
| b3261 | fis | +0.5 | 1.4 | DNA-binding protein Fis (NCBI) | compare |
| b2012 | yeeD | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b4012 | yjaB | +0.5 | 1.7 | predicted acetyltransferase (NCBI) | compare |
| b0178 | hlpA | +0.5 | 2.7 | periplasmic chaperone (NCBI) | compare |
| b3009 | yghB | +0.5 | 3.6 | conserved inner membrane protein (NCBI) | compare |
| b0436 | tig | +0.5 | 3.6 | trigger factor (NCBI) | compare |
| b0661 | miaB | +0.5 | 4.0 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b2145 | yeiS | +0.5 | 2.8 | predicted inner membrane protein (NCBI) | compare |
| b1837 | yebW | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0613 | citG | +0.5 | 1.4 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b2189 | proL | +0.5 | 1.6 | tRNA-Pro (NCBI) | compare |
| b0864 | artP | +0.5 | 2.4 | arginine transporter subunit (NCBI) | compare |
| b3871 | bipA | +0.5 | 3.8 | GTP-binding protein (NCBI) | compare |
| b1422 | ydcI | +0.5 | 2.6 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1325 | ycjG | +0.5 | 2.0 | putative muconate cycloisomerase I (EC 5.5.-.-) (VIMSS) | compare |
| b1761 | gdhA | +0.5 | 3.5 | glutamate dehydrogenase (NCBI) | compare |
| b0051 | ksgA | +0.5 | 2.0 | dimethyladenosine transferase (NCBI) | compare |
| b0490 | ybbL | +0.5 | 3.2 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0925 | ycbB | +0.4 | 3.9 | predicted carboxypeptidase (NCBI) | compare |
| b0225 | yafQ | +0.4 | 2.1 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1999 | yeeP | +0.4 | 2.6 | putative histone (VIMSS) | compare |
| b1919 | yedO | +0.4 | 2.4 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b4451 | ryhB | +0.4 | 1.4 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1607 | ydgC | +0.4 | 0.9 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b2635 | ypjK | +0.4 | 1.9 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2904 | gcvH | +0.4 | 0.7 | glycine cleavage system protein H (NCBI) | compare |
| b4590 | ybfK | +0.4 | 0.6 | hypothetical protein (RefSeq) | compare |
| b2485 | hyfE | +0.4 | 2.3 | hydrogenase 4, membrane subunit (NCBI) | compare |
| b3523 | yhjE | +0.4 | 3.7 | predicted transporter (NCBI) | compare |
| b4190 | yjfP | +0.4 | 3.2 | predicted hydrolase (NCBI) | compare |
| b1823 | cspC | +0.4 | 1.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b1623 | add | +0.4 | 1.4 | adenosine deaminase (NCBI) | compare |
| b3181 | greA | +0.4 | 2.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4246 | pyrL | +0.4 | 0.9 | pyrBI operon leader peptide (NCBI) | compare |
| b2903 | gcvP | +0.4 | 3.1 | glycine dehydrogenase (NCBI) | compare |
| b2356 | yfdM | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4049 | dusA | +0.4 | 2.9 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b2679 | proX | +0.4 | 1.7 | glycine betaine transporter subunit (NCBI) | compare |
| b4557 | yidD | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.4 | 1.5 | ilvB operon leader peptide (NCBI) | compare |
| b1869 | yecN | +0.4 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b0641 | rlpB | +0.4 | 1.3 | minor lipoprotein (NCBI) | compare |
| b3627 | rfaI | +0.4 | 3.1 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2960 | yggH | +0.4 | 2.9 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b0294 | ykgK | +0.4 | 1.9 | predicted regulator (NCBI) | compare |
| b3780 | rhlB | +0.4 | 3.3 | ATP-dependent RNA helicase (NCBI) | compare |
| b1186 | nhaB | +0.4 | 2.9 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b2050 | wcaI | +0.4 | 2.8 | predicted glycosyl transferase (NCBI) | compare |
| b1355 | b1355 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4011 | yjaA | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | +0.4 | 2.8 | essential cell division protein (NCBI) | compare |
| b3292 | zntR | +0.4 | 2.0 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b3133 | agaV | +0.4 | 1.0 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b3995 | rsd | +0.4 | 2.4 | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | compare |
| b2480 | bcp | +0.4 | 2.6 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b2363 | yfdT | +0.4 | 1.4 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b4431 | rprA | +0.4 | 1.3 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b2464 | talA | +0.4 | 1.8 | transaldolase A (NCBI) | compare |
| b3503 | arsC | +0.4 | 2.3 | arsenate reductase (NCBI) | compare |
| b2003 | yeeT | +0.4 | 1.5 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b4406 | yaeP | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2668 | ygaP | +0.4 | 2.7 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b2667 | ygaV | +0.4 | 2.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1818 | manY | +0.4 | 1.1 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3071 | yqjI | +0.4 | 1.9 | predicted transcriptional regulator (NCBI) | compare |
| b3512 | GadE | +0.4 | 1.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b4181 | yjfI | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3516 | gadX | +0.4 | 3.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3002 | yqhA | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b4071 | nrfB | +0.4 | 1.7 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b0131 | panD | +0.4 | 2.1 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b1233 | ychJ | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b3611 | yibN | +0.4 | 1.8 | predicted rhodanese-related sulfurtransferase (NCBI) | compare |
| b0310 | ykgH | +0.4 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b0617 | citD | +0.3 | 1.4 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b3468 | yhhN | +0.3 | 3.0 | conserved inner membrane protein (NCBI) | compare |
| b3260 | dusB | +0.3 | 2.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b0143 | pcnB | +0.3 | 2.0 | poly(A) polymerase I (VIMSS) | compare |
| b3812 | yigB | +0.3 | 2.5 | predicted hydrolase (NCBI) | compare |
| b4631 | ykgQ | +0.3 | 0.7 | no description | compare |
| b2512 | yfgL | +0.3 | 1.4 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1730 | ydjO | +0.3 | 0.6 | predicted protein (RefSeq) | compare |
| b4585 | sroB | +0.3 | 0.7 | Novel sRNA, function unknown (RefSeq) | compare |
| b0279 | yagM | +0.3 | 0.2 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3237 | argR | +0.3 | 1.5 | arginine repressor (NCBI) | compare |
| b4559 | yjdO | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1038 | csgF | +0.3 | 1.5 | predicted transport protein (NCBI) | compare |
| b1725 | yniA | +0.3 | 2.1 | predicted phosphotransferase/kinase (NCBI) | compare |
| b4215 | ytfI | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b0018 | mokC | +0.3 | 0.8 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b4426 | isrA | +0.3 | 1.3 | unknown RNA (NCBI) | compare |
| b4651 | yibW | +0.3 | 0.2 | no description | compare |
| b1287 | yciW | +0.3 | 2.1 | putative oxidoreductase (VIMSS) | compare |
| b1263 | trpD | +0.3 | 0.5 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b3875 | ompL | +0.3 | 1.2 | predicted outer membrane porin L (NCBI) | compare |
| b4622 | ytcA | +0.3 | 1.8 | hypothetical protein (RefSeq) | compare |
| b0425 | panE | +0.3 | 2.7 | 2-dehydropantoate 2-reductase (NCBI) | compare |
| b1295 | ymjA | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2783 | chpR | +0.3 | 1.3 | antitoxin of the ChpA-ChpR toxin-antitoxin system (NCBI) | compare |
| b0851 | nfsA | +0.3 | 1.5 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b1476 | fdnI | +0.3 | 0.6 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2099 | yegU | +0.3 | 2.0 | predicted hydrolase (NCBI) | compare |
| b1343 | dbpA | +0.3 | 2.1 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b1007 | b1007 | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1984 | asnW | +0.3 | 0.6 | tRNA-Asn (NCBI) | compare |
| b2768 | ygcP | +0.3 | 1.1 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b1110 | ycfJ | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b1922 | fliA | +0.3 | 2.0 | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | compare |
| b2502 | ppx | +0.3 | 2.2 | exopolyphosphatase (NCBI) | compare |
| b1408 | b1408 | +0.3 | 2.0 | probable enzyme (VIMSS) | compare |
| b2266 | elaB | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2061 | wzb | +0.3 | 1.1 | protein-tyrosine phosphatase (NCBI) | compare |
| b1674 | ydhY | +0.3 | 2.1 | predicted 4Fe-4S ferridoxin-type protein (NCBI) | compare |
| b1442 | ydcU | +0.3 | 1.6 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |