| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +3.2 | 23.6 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1954 | dsrA | +1.8 | 9.0 | regulatory antisense RNA (NCBI) | compare |
| b1823 | cspC | +1.7 | 4.4 | stress protein, member of the CspA-family (NCBI) | compare |
| b4402 | yjjY | +1.6 | 3.1 | hypothetical protein (NCBI) | compare |
| b2217 | rcsB | +1.3 | 9.0 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b4133 | cadC | +1.1 | 9.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b4603 | rseX | +1.0 | 1.3 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2531 | iscR | +1.0 | 2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4246 | pyrL | +1.0 | 2.4 | pyrBI operon leader peptide (NCBI) | compare |
| b2659 | b2659 | +1.0 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3443 | yrhA | +0.9 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2741 | rpoS | +0.9 | 6.4 | RNA polymerase sigma factor (NCBI) | compare |
| b1709 | btuD | +0.9 | 1.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b4215 | ytfI | +0.8 | 2.1 | hypothetical protein (NCBI) | compare |
| b3753 | rbsR | +0.8 | 6.9 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b3755 | yieP | +0.8 | 5.5 | predicted transcriptional regulator (NCBI) | compare |
| b1506 | yneL | +0.8 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b1831 | proQ | +0.7 | 4.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1848 | yebG | +0.7 | 2.0 | conserved protein regulated by LexA (NCBI) | compare |
| b3206 | npr | +0.7 | 3.8 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1253 | yciA | +0.7 | 2.3 | predicted hydrolase (NCBI) | compare |
| b4585 | sroB | +0.7 | 1.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b1400 | paaY | +0.7 | 2.2 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b3146 | yraL | +0.7 | 4.7 | predicted methyltransferase (NCBI) | compare |
| b0240 | crl | +0.7 | 5.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2502 | ppx | +0.7 | 5.1 | exopolyphosphatase (NCBI) | compare |
| b1642 | slyA | +0.7 | 2.8 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1245 | oppC | +0.7 | 4.2 | oligopeptide transporter subunit (NCBI) | compare |
| b2181 | yejG | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b2846 | yqeH | +0.6 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b2012 | yeeD | +0.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b1607 | ydgC | +0.6 | 1.8 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b2189 | proL | +0.6 | 2.2 | tRNA-Pro (NCBI) | compare |
| b3512 | GadE | +0.6 | 3.2 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0232 | yafN | +0.6 | 0.6 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b4045 | yjbJ | +0.6 | 1.8 | predicted stress response protein (NCBI) | compare |
| b1936 | intG | +0.6 | 0.9 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b4593 | ymgI | +0.6 | 1.0 | hypothetical protein (RefSeq) | compare |
| b2829 | ptsP | +0.6 | 5.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1658 | purR | +0.6 | 3.9 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b3261 | fis | +0.6 | 1.6 | DNA-binding protein Fis (NCBI) | compare |
| b2007 | yeeX | +0.6 | 1.4 | conserved protein (RefSeq) | compare |
| b1134 | ymfB | +0.6 | 1.5 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1839 | yebY | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b0234 | yafP | +0.6 | 1.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1765 | ydjA | +0.6 | 0.8 | predicted oxidoreductase (NCBI) | compare |
| b3933 | ftsN | +0.6 | 4.2 | essential cell division protein (NCBI) | compare |
| b3516 | gadX | +0.6 | 4.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1361 | ydaW | +0.5 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b1358 | ydaT | +0.5 | 1.4 | Rac prophage; predicted protein (NCBI) | compare |
| b3397 | nudE | +0.5 | 3.9 | ADP-ribose diphosphatase (NCBI) | compare |
| b3495 | uspA | +0.5 | 4.7 | universal stress global response regulator (NCBI) | compare |
| b2479 | gcvR | +0.5 | 2.8 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1669 | ydhT | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b2343 | b2343 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3889 | yiiE | +0.5 | 1.7 | predicted transcriptional regulator (RefSeq) | compare |
| b2637 | yfjT | +0.5 | 2.1 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b4450 | arcZ | +0.5 | 2.9 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1860 | ruvB | +0.5 | 0.4 | Holliday junction DNA helicase B (NCBI) | compare |
| b2960 | yggH | +0.5 | 3.3 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b1465 | narV | +0.5 | 1.2 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1247 | oppF | +0.5 | 2.5 | oligopeptide transporter subunit (NCBI) | compare |
| b1246 | oppD | +0.5 | 3.4 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1179 | ycgL | +0.5 | 1.4 | conserved protein (NCBI) | compare |
| b4642 | yoeD | +0.5 | 2.0 | no description | compare |
| b1150 | ymfR | +0.5 | 0.8 | e14 prophage; predicted protein (NCBI) | compare |
| b1233 | ychJ | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b1984 | asnW | +0.5 | 0.9 | tRNA-Asn (NCBI) | compare |
| b3238 | yhcN | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0802 | ybiJ | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1493 | gadB | +0.5 | 0.8 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4545 | ypdJ | +0.5 | 1.9 | no description | compare |
| b0661 | miaB | +0.5 | 3.8 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3816 | corA | +0.5 | 3.6 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b3190 | yrbA | +0.4 | 2.9 | orf, hypothetical protein (VIMSS) | compare |
| b4214 | cysQ | +0.4 | 3.7 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b0436 | tig | +0.4 | 2.6 | trigger factor (NCBI) | compare |
| b0696 | kdpC | +0.4 | 1.7 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b0247 | ykfG | +0.4 | 1.1 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b1600 | mdtJ | +0.4 | 1.1 | multidrug efflux system transporter (NCBI) | compare |
| b4066 | yjcF | +0.4 | 0.3 | hypothetical protein (NCBI) | compare |
| b1244 | oppB | +0.4 | 3.0 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b4590 | ybfK | +0.4 | 0.6 | hypothetical protein (RefSeq) | compare |
| b3098 | yqjD | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b0388 | aroL | +0.4 | 2.3 | shikimate kinase II (NCBI) | compare |
| b1151 | ymfO | +0.4 | 2.5 | e14 prophage; conserved protein (RefSeq) | compare |
| b4071 | nrfB | +0.4 | 2.0 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b3779 | gpp | +0.4 | 3.7 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b1670 | ydhU | +0.4 | 1.8 | predicted cytochrome (NCBI) | compare |
| b1726 | yniB | +0.4 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b3429 | glgA | +0.4 | 3.4 | glycogen synthase (NCBI) | compare |
| b2528 | iscA | +0.4 | 0.8 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b0580 | ybdJ | +0.4 | 1.0 | predicted inner membrane protein (NCBI) | compare |
| b1949 | fliQ | +0.4 | 1.9 | flagellar biosynthesis protein Q (NCBI) | compare |
| b2266 | elaB | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1221 | narL | +0.4 | 2.4 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b1243 | oppA | +0.4 | 2.7 | oligopeptide transporter subunit (NCBI) | compare |
| b1824 | yobF | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b4431 | rprA | +0.4 | 1.4 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b2668 | ygaP | +0.4 | 2.5 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b1891 | flhC | +0.4 | 1.9 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b4686 | yshB | +0.4 | 1.6 | expressed protein (RefSeq) | compare |
| b1647 | ydhF | +0.4 | 2.5 | predicted oxidoreductase (NCBI) | compare |
| b0447 | ybaO | +0.4 | 2.3 | putative LRP-like transcriptional regulator (VIMSS) | compare |
| b1295 | ymjA | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |
| b3643 | rph | +0.4 | 2.7 | ribonuclease PH (NCBI) | compare |
| b0920 | ycbC | +0.4 | 1.1 | conserved inner membrane protein (NCBI) | compare |
| b1357 | ydaS | +0.4 | 1.2 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2742 | nlpD | +0.4 | 2.3 | predicted outer membrane lipoprotein (NCBI) | compare |
| b0426 | yajQ | +0.4 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b2666 | yqaE | +0.4 | 1.7 | predicted membrane protein (NCBI) | compare |
| b1362 | rzpR | +0.4 | 1.5 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1426 | ydcH | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3766 | ilvL | +0.4 | 1.4 | ilvG operon leader peptide (NCBI) | compare |
| b3138 | agaB | +0.4 | 1.6 | N-acetylgalactosamine-specific enzyme IIB component of PTS (NCBI) | compare |
| b3507 | dctR | +0.4 | 3.2 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b0242 | proB | +0.4 | 2.2 | gamma-glutamyl kinase (NCBI) | compare |
| b0613 | citG | +0.4 | 1.9 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b3292 | zntR | +0.4 | 1.6 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b2535 | csiE | +0.4 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b1143 | ymfI | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1164 | ycgZ | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1180 | ycgM | +0.4 | 1.9 | predicted isomerase/hydrolase (NCBI) | compare |
| b1627 | rsxA | +0.4 | 2.0 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1085 | b1085 | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1387 | maoC | +0.3 | 2.1 | fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI) | compare |
| b0955 | ycbZ | +0.3 | 2.7 | predicted peptidase (NCBI) | compare |
| b1586 | b1586 | +0.3 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1953 | b1953 | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2300 | yfcE | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0082 | mraW | +0.3 | 1.5 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2911 | ssrS | +0.3 | 0.5 | 6S regulatory RNA (NCBI) | compare |
| b3228 | sspB | +0.3 | 1.6 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b4651 | yibW | +0.3 | 0.2 | no description | compare |
| b2506 | yfgI | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b1446 | ydcY | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b4552 | yrhC | +0.3 | 0.5 | no description | compare |
| b1422 | ydcI | +0.3 | 1.5 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b0263 | afuB | +0.3 | 0.8 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b2448 | yffQ | +0.3 | 1.5 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4222 | ytfP | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2291 | yfbR | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b1671 | ydhX | +0.3 | 1.1 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b3912 | cpxR | +0.3 | 2.3 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b0616 | citE | +0.3 | 2.2 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b1492 | gadC | +0.3 | 2.3 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1743 | spy | +0.3 | 1.4 | envelope stress induced periplasmic protein (NCBI) | compare |
| b2945 | endA | +0.3 | 2.5 | DNA-specific endonuclease I (NCBI) | compare |
| b1012 | b1012 | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1537 | ydeJ | +0.3 | 1.8 | competence damage-inducible protein A (NCBI) | compare |
| b1382 | ynbE | +0.3 | 0.9 | predicted lipoprotein (NCBI) | compare |
| b2936 | yggG | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b2341 | yfcX | +0.3 | 2.3 | fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | compare |
| b1040 | csgD | +0.3 | 0.8 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1250 | kch | +0.3 | 2.2 | voltage-gated potassium channel (NCBI) | compare |
| b4124 | dcuR | +0.3 | 2.6 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | compare |
| b0225 | yafQ | +0.3 | 1.6 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b3071 | yqjI | +0.3 | 1.7 | predicted transcriptional regulator (NCBI) | compare |
| b2455 | eutE | +0.3 | 1.6 | predicted aldehyde dehydrogenase, ethanolamine utilization protein (NCBI) | compare |
| b0660 | ybeZ | +0.3 | 1.7 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b1355 | b1355 | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1443 | ydcV | +0.3 | 1.3 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1218 | chaC | +0.3 | 2.1 | regulatory protein for cation transport (RefSeq) | compare |
| b4050 | yjbO | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b0243 | proA | +0.3 | 2.3 | gamma-glutamyl phosphate reductase (NCBI) | compare |
| b3017 | sufI | +0.3 | 2.4 | repressor protein for FtsI (NCBI) | compare |
| b4157 | yjeN | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0357 | yaiN | +0.3 | 0.9 | putative alpha helix chain (VIMSS) | compare |
| b3468 | yhhN | +0.3 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b0999 | cbpM | +0.3 | 1.1 | modulator of CbpA co-chaperone (NCBI) | compare |
| b1487 | ddpA | +0.3 | 1.7 | D-ala-D-a la transporter subunit (NCBI) | compare |
| b4181 | yjfI | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b3043 | ygiL | +0.3 | 1.4 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0792 | ybhR | +0.3 | 1.4 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4572 | ylbE | +0.3 | 1.5 | no description | compare |
| b1730 | ydjO | +0.3 | 0.5 | predicted protein (RefSeq) | compare |
| b1821 | b1821 | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2476 | purC | +0.3 | 1.0 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b2953 | yggU | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1194 | ycgR | +0.3 | 1.7 | protein involved in flagellar function (NCBI) | compare |
| b0435 | bolA | +0.3 | 1.3 | possible regulator of murein genes (VIMSS) | compare |
| b1948 | fliP | +0.3 | 1.5 | flagellar biosynthesis protein P (NCBI) | compare |
| b3166 | truB | +0.3 | 2.1 | tRNA pseudouridine synthase B (NCBI) | compare |
| b0803 | ybiI | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b3934 | cytR | +0.3 | 2.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2398 | yfeC | +0.3 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0864 | artP | +0.3 | 1.4 | arginine transporter subunit (NCBI) | compare |
| b1213 | ychQ | +0.3 | 1.8 | predicted transcriptional regulator (NCBI) | compare |
| b3393 | yrfB | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b4072 | nrfC | +0.3 | 1.8 | formate-dependent nitrite reductase, 4Fe4S subunit (NCBI) | compare |
| b2082 | ogrK | +0.3 | 1.5 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b4101 | phnG | +0.3 | 1.0 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1989 | asnV | +0.3 | 1.0 | tRNA-Asn (NCBI) | compare |
| b1309 | ycjM | +0.3 | 1.5 | putative polysaccharide hydrolase (VIMSS) | compare |
| b2443 | yffL | +0.3 | 1.2 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2644 | yfjY | +0.3 | 1.2 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b2916 | argP | +0.3 | 1.8 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b1007 | b1007 | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b3152 | yraR | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |