| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +3.4 | 24.1 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1954 | dsrA | +2.1 | 11.6 | regulatory antisense RNA (NCBI) | compare |
| b2741 | rpoS | +2.1 | 17.7 | RNA polymerase sigma factor (NCBI) | compare |
| b1823 | cspC | +1.7 | 6.6 | stress protein, member of the CspA-family (NCBI) | compare |
| b2217 | rcsB | +1.5 | 11.5 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b4402 | yjjY | +1.5 | 3.4 | hypothetical protein (NCBI) | compare |
| b2531 | iscR | +1.5 | 2.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1642 | slyA | +1.3 | 5.7 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4133 | cadC | +1.1 | 10.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b3229 | sspA | +1.0 | 5.0 | stringent starvation protein A (NCBI) | compare |
| b1709 | btuD | +1.0 | 1.2 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1085 | b1085 | +1.0 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1831 | proQ | +1.0 | 6.1 | putative solute/DNA competence effector (NCBI) | compare |
| b3753 | rbsR | +0.9 | 7.8 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2659 | b2659 | +0.9 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3238 | yhcN | +0.9 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b0240 | crl | +0.8 | 5.3 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4603 | rseX | +0.8 | 1.0 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b0014 | dnaK | +0.8 | 3.3 | molecular chaperone DnaK (NCBI) | compare |
| b1150 | ymfR | +0.8 | 1.4 | e14 prophage; predicted protein (NCBI) | compare |
| b2189 | proL | +0.7 | 2.6 | tRNA-Pro (NCBI) | compare |
| b1247 | oppF | +0.7 | 4.4 | oligopeptide transporter subunit (NCBI) | compare |
| b1824 | yobF | +0.7 | 2.6 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +0.7 | 6.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3516 | gadX | +0.7 | 6.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0357 | yaiN | +0.7 | 2.2 | putative alpha helix chain (VIMSS) | compare |
| b1233 | ychJ | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.7 | 2.0 | ilvB operon leader peptide (NCBI) | compare |
| b3206 | npr | +0.7 | 3.9 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1001 | yccE | +0.7 | 0.4 | hypothetical protein (NCBI) | compare |
| b3146 | yraL | +0.7 | 4.9 | predicted methyltransferase (NCBI) | compare |
| b3443 | yrhA | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1582 | ynfA | +0.7 | 2.7 | hypothetical protein (NCBI) | compare |
| b1344 | ydaO | +0.7 | 2.5 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2502 | ppx | +0.6 | 5.1 | exopolyphosphatase (NCBI) | compare |
| b3755 | yieP | +0.6 | 3.8 | predicted transcriptional regulator (NCBI) | compare |
| b1246 | oppD | +0.6 | 3.9 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b4012 | yjaB | +0.6 | 1.4 | predicted acetyltransferase (NCBI) | compare |
| b3027 | ygiZ | +0.6 | 0.5 | conserved inner membrane protein (NCBI) | compare |
| b3495 | uspA | +0.6 | 5.0 | universal stress global response regulator (NCBI) | compare |
| b3397 | nudE | +0.6 | 4.9 | ADP-ribose diphosphatase (NCBI) | compare |
| b1658 | purR | +0.6 | 4.5 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b1243 | oppA | +0.6 | 4.4 | oligopeptide transporter subunit (NCBI) | compare |
| b4071 | nrfB | +0.6 | 1.5 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b3649 | rpoZ | +0.6 | 2.0 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b2668 | ygaP | +0.6 | 3.6 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b1160 | elbA | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b0660 | ybeZ | +0.5 | 3.5 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b0705 | ybfL | +0.5 | 0.6 | putative receptor protein (VIMSS) | compare |
| b4406 | yaeP | +0.5 | 2.4 | hypothetical protein (NCBI) | compare |
| b1279 | yciS | +0.5 | 1.2 | conserved inner membrane protein (NCBI) | compare |
| b0388 | aroL | +0.5 | 3.3 | shikimate kinase II (NCBI) | compare |
| b4045 | yjbJ | +0.5 | 1.3 | predicted stress response protein (NCBI) | compare |
| b2007 | yeeX | +0.5 | 1.6 | conserved protein (RefSeq) | compare |
| b0613 | citG | +0.5 | 2.0 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b2448 | yffQ | +0.5 | 1.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1765 | ydjA | +0.5 | 0.7 | predicted oxidoreductase (NCBI) | compare |
| b1936 | intG | +0.5 | 0.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0436 | tig | +0.5 | 3.2 | trigger factor (NCBI) | compare |
| b2742 | nlpD | +0.5 | 2.7 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4345 | mcrC | +0.5 | 0.9 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1685 | ydiH | +0.5 | 1.4 | predicted protein (RefSeq) | compare |
| b1670 | ydhU | +0.5 | 2.2 | predicted cytochrome (NCBI) | compare |
| b3429 | glgA | +0.5 | 4.2 | glycogen synthase (NCBI) | compare |
| b3779 | gpp | +0.5 | 4.4 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b3446 | yrhB | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b2229 | b2229 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4585 | sroB | +0.5 | 1.1 | Novel sRNA, function unknown (RefSeq) | compare |
| b3912 | cpxR | +0.5 | 2.7 | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | compare |
| b4407 | thiS | +0.5 | 1.9 | sulfur carrier protein ThiS (NCBI) | compare |
| b4397 | creA | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0456 | ybaA | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2083 | yegZ | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4676 | yoaK | +0.5 | 0.4 | expressed protein (RefSeq) | compare |
| b4128 | yjdK | +0.5 | 0.4 | hypothetical protein (NCBI) | compare |
| b4066 | yjcF | +0.5 | 0.4 | hypothetical protein (NCBI) | compare |
| b4426 | isrA | +0.5 | 1.8 | unknown RNA (NCBI) | compare |
| b3166 | truB | +0.5 | 3.8 | tRNA pseudouridine synthase B (NCBI) | compare |
| b1164 | ycgZ | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b0294 | ykgK | +0.5 | 2.2 | predicted regulator (NCBI) | compare |
| b2743 | pcm | +0.5 | 2.3 | protein-L-isoaspartate O-methyltransferase (NCBI) | compare |
| b0092 | ddlB | +0.4 | 2.5 | D-alanylalanine synthetase (NCBI) | compare |
| b0661 | miaB | +0.4 | 3.8 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3512 | GadE | +0.4 | 1.6 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2944 | sprT | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b1244 | oppB | +0.4 | 3.1 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b1245 | oppC | +0.4 | 2.9 | oligopeptide transporter subunit (NCBI) | compare |
| b1448 | yncA | +0.4 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1597 | asr | +0.4 | 2.2 | acid shock protein (VIMSS) | compare |
| b1492 | gadC | +0.4 | 3.0 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b2637 | yfjT | +0.4 | 1.3 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b0535 | fimZ | +0.4 | 2.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2199 | ccmC | +0.4 | 2.0 | heme exporter subunit (NCBI) | compare |
| b0082 | mraW | +0.4 | 2.1 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2768 | ygcP | +0.4 | 1.1 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b0851 | nfsA | +0.4 | 1.7 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b2181 | yejG | +0.4 | 2.2 | hypothetical protein (NCBI) | compare |
| b1743 | spy | +0.4 | 1.2 | envelope stress induced periplasmic protein (NCBI) | compare |
| b1607 | ydgC | +0.4 | 1.3 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1400 | paaY | +0.4 | 1.1 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1822 | rrmA | +0.4 | 1.5 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1789 | yeaL | +0.4 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b1167 | ymgC | +0.4 | 0.2 | hypothetical protein (NCBI) | compare |
| b3153 | yhbO | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3228 | sspB | +0.4 | 2.2 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b0955 | ycbZ | +0.4 | 3.5 | predicted peptidase (NCBI) | compare |
| b1600 | mdtJ | +0.4 | 1.0 | multidrug efflux system transporter (NCBI) | compare |
| b2644 | yfjY | +0.4 | 1.5 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b3292 | zntR | +0.4 | 2.0 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b3042 | b3042 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4477 | dgoA | +0.4 | 1.8 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI) | compare |
| b3884 | yihW | +0.4 | 2.3 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b0503 | ybbB | +0.4 | 1.2 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b2479 | gcvR | +0.4 | 2.5 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1865 | nudB | +0.4 | 0.7 | dATP pyrophosphohydrolase (NCBI) | compare |
| b0717 | ybgP | +0.4 | 2.8 | predicted assembly protein (NCBI) | compare |
| b1253 | yciA | +0.4 | 1.2 | predicted hydrolase (NCBI) | compare |
| b3875 | ompL | +0.4 | 1.5 | predicted outer membrane porin L (NCBI) | compare |
| b2646 | ypjF | +0.4 | 1.4 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |
| b3163 | nlpI | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b0782 | moaB | +0.4 | 0.9 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b3816 | corA | +0.4 | 3.1 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b2960 | yggH | +0.4 | 2.6 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b2165 | yeiN | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0858 | ybjO | +0.4 | 1.3 | predicted inner membrane protein (NCBI) | compare |
| b4642 | yoeD | +0.4 | 1.1 | no description | compare |
| b1461 | ydcE | +0.4 | 1.2 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b0617 | citD | +0.4 | 0.9 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2004 | yeeU | +0.4 | 1.0 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b3261 | fis | +0.4 | 1.0 | DNA-binding protein Fis (NCBI) | compare |
| b2058 | wcaB | +0.4 | 0.8 | predicted acyl transferase (NCBI) | compare |
| b0426 | yajQ | +0.4 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1013 | ycdC | +0.4 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0018 | mokC | +0.4 | 0.9 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1920 | fliY | +0.4 | 1.1 | cystine transporter subunit (NCBI) | compare |
| b1007 | b1007 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0122 | yacC | +0.4 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b3686 | ibpB | +0.4 | 1.8 | heat shock chaperone (NCBI) | compare |
| b3507 | dctR | +0.4 | 3.2 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b4293 | fecI | +0.4 | 1.2 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b2326 | yfcM | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b4504 | ykfH | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b3032 | cpdA | +0.4 | 2.8 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b3432 | glgB | +0.3 | 3.1 | glycogen branching enzyme (NCBI) | compare |
| b3890 | yiiF | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2998 | yghW | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b1919 | yedO | +0.3 | 1.6 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1218 | chaC | +0.3 | 1.7 | regulatory protein for cation transport (RefSeq) | compare |
| b4571 | wbbL | +0.3 | 1.7 | no description | compare |
| b2317 | dedA | +0.3 | 1.2 | conserved inner membrane protein (NCBI) | compare |
| b1970 | yedX | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b0549 | ybcO | +0.3 | 1.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4214 | cysQ | +0.3 | 2.7 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b2099 | yegU | +0.3 | 1.6 | predicted hydrolase (NCBI) | compare |
| b4435 | isrC | +0.3 | 1.1 | unknown RNA (NCBI) | compare |
| b1329 | b1329 | +0.3 | 2.1 | putative transport periplasmic protein (VIMSS) | compare |
| b4215 | ytfI | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b1079 | flgH | +0.3 | 1.3 | flagellar L-ring protein precursor H (NCBI) | compare |
| b1573 | ydfC | +0.3 | 0.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b2934 | cmtB | +0.3 | 0.4 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1358 | ydaT | +0.3 | 0.9 | Rac prophage; predicted protein (NCBI) | compare |
| b1134 | ymfB | +0.3 | 1.2 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b3889 | yiiE | +0.3 | 1.1 | predicted transcriptional regulator (RefSeq) | compare |
| b2859 | ygeO | +0.3 | 0.9 | hypothetical protein (RefSeq) | compare |
| b1295 | ymjA | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b0382 | yaiB | +0.3 | 2.5 | hypothetical protein (NCBI) | compare |
| b4094 | phnN | +0.3 | 1.5 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b0713 | ybgL | +0.3 | 2.3 | hypothetical protein (NCBI) | compare |
| b1366 | ydaY | +0.3 | 1.4 | Rac prophage; predicted protein (RefSeq) | compare |
| b1422 | ydcI | +0.3 | 1.6 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1103 | ycfF | +0.3 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b2916 | argP | +0.3 | 2.1 | chromosome replication initiation inhibitor protein (NCBI) | compare |
| b4606 | ypfM | +0.3 | 1.4 | hypothetical protein (RefSeq) | compare |
| b0423 | thiI | +0.3 | 2.2 | thiamine biosynthesis protein ThiI (NCBI) | compare |
| b0217 | yafT | +0.3 | 1.9 | predicted aminopeptidase (NCBI) | compare |
| b2221 | atoD | +0.3 | 1.4 | acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (NCBI) | compare |
| b1890 | motA | +0.3 | 2.1 | flagellar motor protein MotA (NCBI) | compare |
| b1586 | b1586 | +0.3 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0864 | artP | +0.3 | 1.8 | arginine transporter subunit (NCBI) | compare |
| b4078 | yjcO | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b3468 | yhhN | +0.3 | 2.7 | conserved inner membrane protein (NCBI) | compare |
| b1891 | flhC | +0.3 | 2.0 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b1674 | ydhY | +0.3 | 2.2 | predicted 4Fe-4S ferridoxin-type protein (NCBI) | compare |
| b0623 | cspE | +0.3 | 0.8 | cold shock protein E (NCBI) | compare |
| b2535 | csiE | +0.3 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b2705 | srlD | +0.3 | 2.1 | 3-ketoacyl-(acyl-carrier-protein) reductase (NCBI) | compare |
| b0502 | ylbG | +0.3 | 1.1 | no description | compare |
| b3131 | agaR | +0.3 | 1.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2145 | yeiS | +0.3 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b3002 | yqhA | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b4097 | phnK | +0.3 | 1.0 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b0696 | kdpC | +0.3 | 1.4 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b4592 | yccB | +0.3 | 1.1 | hypothetical protein (RefSeq) | compare |
| b2457 | cchA | +0.3 | 1.4 | detox protein (VIMSS) | compare |
| b1195 | ymgE | +0.3 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b3752 | rbsK | +0.3 | 2.3 | ribokinase (NCBI) | compare |
| b0191 | yaeJ | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b2047 | wcaJ | +0.3 | 1.6 | predicted UDP-glucose lipid carrier transferase (NCBI) | compare |
| b2911 | ssrS | +0.3 | 0.4 | 6S regulatory RNA (NCBI) | compare |
| b3812 | yigB | +0.3 | 1.8 | predicted hydrolase (NCBI) | compare |