| | gene | name | fitness | t score | description | |
|---|
| b1243 | oppA | +3.7 | 26.0 | oligopeptide transporter subunit (NCBI) | compare |
| b1246 | oppD | +3.7 | 31.7 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b1244 | oppB | +3.6 | 26.6 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b1247 | oppF | +3.6 | 24.6 | oligopeptide transporter subunit (NCBI) | compare |
| b1245 | oppC | +3.6 | 28.8 | oligopeptide transporter subunit (NCBI) | compare |
| b2684 | mprA | +2.7 | 8.2 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b0929 | ompF | +2.5 | 16.9 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b3911 | cpxA | +2.4 | 19.6 | two-component sensor protein (NCBI) | compare |
| b1236 | galU | +1.8 | 6.6 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2469 | narQ | +1.8 | 6.4 | sensory histidine kinase in two-component regulatory system with NarP (NarL) (NCBI) | compare |
| b3169 | nusA | +1.7 | 3.8 | transcription elongation factor NusA (NCBI) | compare |
| b2078 | baeS | +1.5 | 8.5 | sensory histidine kinase in two-component regulatory system with BaeR (NCBI) | compare |
| b3842 | rfaH | +1.5 | 6.9 | transcriptional activator RfaH (NCBI) | compare |
| b0688 | pgm | +1.4 | 5.7 | phosphoglucomutase (NCBI) | compare |
| b0464 | acrR | +1.3 | 10.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4402 | yjjY | +1.3 | 2.4 | hypothetical protein (NCBI) | compare |
| b3979 | thrT | +1.2 | 0.9 | tRNA-Thr (NCBI) | compare |
| b1530 | marR | +1.2 | 2.8 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3631 | rfaG | +1.2 | 10.0 | glucosyltransferase I (NCBI) | compare |
| b1936 | intG | +1.2 | 1.8 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2911 | ssrS | +1.2 | 2.2 | 6S regulatory RNA (NCBI) | compare |
| b0178 | hlpA | +1.2 | 6.7 | periplasmic chaperone (NCBI) | compare |
| b2303 | folX | +1.1 | 10.0 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b1613 | manA | +1.1 | 2.7 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b4603 | rseX | +1.0 | 1.4 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b1606 | folM | +1.0 | 6.7 | short chain dehydrogenase (NCBI) | compare |
| b3181 | greA | +1.0 | 5.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2617 | smpA | +1.0 | 4.4 | small membrane protein A (VIMSS) | compare |
| b4246 | pyrL | +1.0 | 1.9 | pyrBI operon leader peptide (NCBI) | compare |
| b3341 | rpsG | +0.9 | 2.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b3778 | rep | +0.9 | 6.5 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1150 | ymfR | +0.9 | 1.7 | e14 prophage; predicted protein (NCBI) | compare |
| b4041 | plsB | +0.9 | 3.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b4163 | glyV | +0.8 | 2.2 | tRNA-Gly (NCBI) | compare |
| b1284 | yciT | +0.8 | 5.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1482 | osmC | +0.8 | 2.5 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b1818 | manY | +0.7 | 2.0 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b2659 | b2659 | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4279 | yjhB | +0.7 | 0.5 | putative transport protein (VIMSS) | compare |
| b2217 | rcsB | +0.7 | 5.7 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3180 | yhbY | +0.7 | 4.2 | predicted RNA-binding protein (NCBI) | compare |
| b0730 | mngR | +0.7 | 1.6 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1257 | yciE | +0.7 | 0.4 | hypothetical protein (NCBI) | compare |
| b0759 | galE | +0.6 | 4.6 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b2531 | iscR | +0.6 | 1.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3423 | glpR | +0.6 | 5.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0209 | yafD | +0.6 | 4.2 | hypothetical protein (NCBI) | compare |
| b2821 | ptr | +0.6 | 5.6 | protease III (NCBI) | compare |
| b4066 | yjcF | +0.6 | 0.5 | hypothetical protein (NCBI) | compare |
| b3443 | yrhA | +0.6 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1095 | fabF | +0.6 | 4.6 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b4030 | yjbA | +0.6 | 4.1 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b3512 | GadE | +0.6 | 2.8 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b0122 | yacC | +0.6 | 4.1 | orf, hypothetical protein (VIMSS) | compare |
| b2903 | gcvP | +0.6 | 5.3 | glycine dehydrogenase (NCBI) | compare |
| b3082 | ygjM | +0.6 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1837 | yebW | +0.6 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3095 | yqjA | +0.6 | 4.7 | conserved inner membrane protein (NCBI) | compare |
| b3620 | rfaF | +0.6 | 2.3 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b4648 | ysaC | +0.6 | 2.0 | no description | compare |
| b1164 | ycgZ | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b4391 | yjjK | +0.6 | 4.5 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b2642 | yfjW | +0.6 | 1.0 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3627 | rfaI | +0.6 | 4.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b1831 | proQ | +0.6 | 3.0 | putative solute/DNA competence effector (NCBI) | compare |
| b1242 | ychE | +0.5 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b3933 | ftsN | +0.5 | 4.4 | essential cell division protein (NCBI) | compare |
| b3630 | rfaP | +0.5 | 3.8 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2904 | gcvH | +0.5 | 1.9 | glycine cleavage system protein H (NCBI) | compare |
| b0263 | afuB | +0.5 | 2.4 | CP4-6 prophage; predicted ferric trasnporter subunit (RefSeq) | compare |
| b3026 | qseC | +0.5 | 1.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1361 | ydaW | +0.5 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b2450 | yffS | +0.5 | 1.9 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1159 | mcrA | +0.5 | 1.0 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b0046 | kefF | +0.5 | 3.4 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b2934 | cmtB | +0.5 | 0.6 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1842 | holE | +0.5 | 1.7 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3628 | rfaB | +0.5 | 4.0 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b1961 | dcm | +0.5 | 1.3 | DNA cytosine methylase (NCBI) | compare |
| b1583 | ynfB | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b0401 | brnQ | +0.5 | 3.8 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b2218 | rcsC | +0.5 | 4.0 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b1548 | nohA | +0.5 | 1.0 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b3194 | yrbE | +0.5 | 3.8 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1919 | yedO | +0.4 | 1.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b3146 | yraL | +0.4 | 3.4 | predicted methyltransferase (NCBI) | compare |
| b1085 | b1085 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4570 | lomR | +0.4 | 1.5 | no description | compare |
| b2012 | yeeD | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b3238 | yhcN | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3500 | gor | +0.4 | 1.1 | glutathione reductase (NCBI) | compare |
| b2181 | yejG | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b1070 | flgN | +0.4 | 1.1 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4651 | yibW | +0.4 | 0.3 | no description | compare |
| b1434 | ydcN | +0.4 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3429 | glgA | +0.4 | 3.4 | glycogen synthase (NCBI) | compare |
| b2749 | ygbE | +0.4 | 2.7 | conserved inner membrane protein (NCBI) | compare |
| b1804 | rnd | +0.4 | 2.2 | ribonuclease D (NCBI) | compare |
| b1111 | ycfQ | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1674 | ydhY | +0.4 | 2.7 | predicted 4Fe-4S ferridoxin-type protein (NCBI) | compare |
| b3391 | hofQ | +0.4 | 3.4 | predicted fimbrial transporter (NCBI) | compare |
| b2236 | yfaE | +0.4 | 2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4655 | ythA | +0.4 | 0.7 | expressed protein (RefSeq) | compare |
| b4436 | ryeC | +0.4 | 1.4 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1349 | recT | +0.4 | 2.7 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b4045 | yjbJ | +0.4 | 1.5 | predicted stress response protein (NCBI) | compare |
| b3766 | ilvL | +0.4 | 2.0 | ilvG operon leader peptide (NCBI) | compare |
| b2480 | bcp | +0.4 | 2.9 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b2477 | nlpB | +0.4 | 2.0 | lipoprotein-34 (VIMSS) | compare |
| b1642 | slyA | +0.4 | 1.5 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4173 | hflX | +0.4 | 2.7 | predicted GTPase (NCBI) | compare |
| b2168 | fruK | +0.4 | 0.6 | 1-phosphofructokinase (NCBI) | compare |
| b3192 | yrbC | +0.4 | 3.2 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1949 | fliQ | +0.4 | 1.5 | flagellar biosynthesis protein Q (NCBI) | compare |
| b1604 | ydgH | +0.4 | 2.5 | hypothetical protein (NCBI) | compare |
| b4596 | yciZ | +0.4 | 1.0 | hypothetical protein (RefSeq) | compare |
| b1527 | yneK | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b1553 | ydfP | +0.4 | 1.3 | Qin prophage; conserved protein (NCBI) | compare |
| b2029 | gnd | +0.4 | 3.0 | 6-phosphogluconate dehydrogenase (NCBI) | compare |
| b1344 | ydaO | +0.4 | 1.2 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2569 | lepA | +0.4 | 1.7 | GTP-binding protein LepA (NCBI) | compare |
| b3858 | yihD | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0213 | yafS | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b2346 | vacJ | +0.4 | 2.8 | predicted lipoprotein (NCBI) | compare |
| b1536 | ydeI | +0.4 | 0.6 | hypothetical protein (NCBI) | compare |
| b3397 | nudE | +0.4 | 2.7 | ADP-ribose diphosphatase (NCBI) | compare |
| b2156 | lysP | +0.4 | 3.1 | lysine transporter (NCBI) | compare |
| b4579 | yaiX | +0.4 | 2.4 | no description | compare |
| b0955 | ycbZ | +0.4 | 2.9 | predicted peptidase (NCBI) | compare |
| b3191 | yrbB | +0.4 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1001 | yccE | +0.4 | 0.2 | hypothetical protein (NCBI) | compare |
| b0047 | kefC | +0.4 | 3.0 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b1492 | gadC | +0.4 | 2.4 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b3213 | gltD | +0.4 | 3.0 | glutamate synthase, 4Fe-4S protein, small subunit (NCBI) | compare |
| b1773 | ydjI | +0.4 | 1.2 | predicted aldolase (NCBI) | compare |
| b3507 | dctR | +0.4 | 3.2 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b1761 | gdhA | +0.4 | 2.4 | glutamate dehydrogenase (NCBI) | compare |
| b1630 | rsxD | +0.4 | 1.7 | electron transport complex protein RnfD (NCBI) | compare |
| b0949 | uup | +0.4 | 2.7 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1582 | ynfA | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0065 | yabI | +0.3 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b4686 | yshB | +0.3 | 2.1 | expressed protein (RefSeq) | compare |
| b4554 | yibT | +0.3 | 1.8 | hypothetical protein (NCBI) | compare |
| b2449 | yffR | +0.3 | 1.8 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1476 | fdnI | +0.3 | 0.6 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b4679 | yohP | +0.3 | 1.5 | expressed protein (RefSeq) | compare |
| b0920 | ycbC | +0.3 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b2812 | ygdL | +0.3 | 2.8 | hypothetical protein (NCBI) | compare |
| b1524 | yneH | +0.3 | 0.6 | predicted glutaminase (NCBI) | compare |
| b3466 | yhhL | +0.3 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b3133 | agaV | +0.3 | 0.9 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b0357 | yaiN | +0.3 | 1.0 | putative alpha helix chain (VIMSS) | compare |
| b1579 | intQ | +0.3 | 1.5 | Qin prophage; predicted defective integrase (RefSeq) | compare |
| b3212 | gltB | +0.3 | 3.2 | glutamate synthase, large subunit (NCBI) | compare |
| b2037 | rfbX | +0.3 | 2.6 | predicted polisoprenol-linked O-antigen transporter (NCBI) | compare |
| b1363 | trkG | +0.3 | 0.3 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b0885 | aat | +0.3 | 1.8 | leucyl/phenylalanyl-tRNA--protein transferase (NCBI) | compare |
| b1539 | ydfG | +0.3 | 1.5 | L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI) | compare |
| b1441 | ydcT | +0.3 | 1.9 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b2570 | rseC | +0.3 | 2.4 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b2369 | evgA | +0.3 | 1.5 | DNA-binding response regulator in two-component regulatory system with EvgS (NCBI) | compare |
| b4511 | ybdZ | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3153 | yhbO | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b3740 | gidB | +0.3 | 2.6 | glucose-inhibited division protein B (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.1 | no description | compare |
| b0125 | hpt | +0.3 | 1.7 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b2528 | iscA | +0.3 | 0.8 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b1907 | tyrP | +0.3 | 1.8 | tyrosine transporter (NCBI) | compare |
| b2681 | ygaY | +0.3 | 2.2 | predicted transporter (pseudogene) (RefSeq) | compare |
| b0946 | ycbW | +0.3 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2960 | yggH | +0.3 | 2.1 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b2614 | grpE | +0.3 | 1.3 | heat shock protein (NCBI) | compare |
| b1195 | ymgE | +0.3 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b1905 | ftn | +0.3 | 2.5 | ferritin iron storage protein (cytoplasmic) (NCBI) | compare |
| b3555 | yiaG | +0.3 | 1.3 | predicted transcriptional regulator (NCBI) | compare |
| b3193 | yrbD | +0.3 | 2.4 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1125 | potB | +0.3 | 1.5 | spermidine/putrescine ABC transporter membrane protein (NCBI) | compare |
| b2006 | yeeW | +0.3 | 2.0 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b0880 | cspD | +0.3 | 1.3 | cold shock protein homolog (NCBI) | compare |
| b3472 | b3472 | +0.3 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2488 | hyfH | +0.3 | 1.5 | hydrogenase 4, Fe-S subunit (NCBI) | compare |
| b3775 | ppiC | +0.3 | 1.9 | peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) | compare |
| b3995 | rsd | +0.3 | 1.7 | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | compare |
| b0775 | bioB | +0.3 | 2.1 | biotin synthase (NCBI) | compare |
| b0736 | ybgC | +0.3 | 1.5 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b1038 | csgF | +0.3 | 0.9 | predicted transport protein (NCBI) | compare |
| b3794 | rffM | +0.3 | 1.8 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b4227 | ytfQ | +0.3 | 1.9 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b4557 | yidD | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1090 | plsX | +0.3 | 1.2 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b2204 | napH | +0.3 | 1.2 | quinol dehydrogenase membrane component (NCBI) | compare |
| b3632 | rfaQ | +0.3 | 2.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1954 | dsrA | +0.3 | 1.3 | regulatory antisense RNA (NCBI) | compare |
| b2259 | pmrD | +0.3 | 0.7 | polymyxin resistance protein B (VIMSS) | compare |
| b3120 | yhaB | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0487 | cueR | +0.3 | 1.7 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b4012 | yjaB | +0.3 | 1.7 | predicted acetyltransferase (NCBI) | compare |
| b1007 | b1007 | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0232 | yafN | +0.3 | 0.2 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0798 | ybiA | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |