| | gene | name | fitness | t score | description | |
|---|
| b2741 | rpoS | +2.8 | 25.3 | RNA polymerase sigma factor (NCBI) | compare |
| b3929 | rraA | +2.4 | 19.7 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1085 | b1085 | +2.3 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b3210 | arcB | +2.0 | 12.9 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b3844 | fre | +1.9 | 13.4 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1954 | dsrA | +1.5 | 7.9 | regulatory antisense RNA (NCBI) | compare |
| b2576 | srmB | +1.4 | 6.2 | ATP-dependent RNA helicase (NCBI) | compare |
| b1830 | prc | +1.4 | 7.2 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3163 | nlpI | +1.4 | 6.0 | hypothetical protein (NCBI) | compare |
| b0990 | cspG | +1.3 | 2.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2168 | fruK | +1.2 | 1.4 | 1-phosphofructokinase (NCBI) | compare |
| b4313 | fimE | +1.2 | 9.7 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b2934 | cmtB | +1.2 | 1.7 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3443 | yrhA | +1.2 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3198 | kdsC | +1.2 | 3.6 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b0122 | yacC | +1.1 | 5.9 | orf, hypothetical protein (VIMSS) | compare |
| b2684 | mprA | +1.1 | 6.3 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b4000 | hupA | +1.0 | 6.4 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3146 | yraL | +1.0 | 7.7 | predicted methyltransferase (NCBI) | compare |
| b0232 | yafN | +1.0 | 0.9 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2688 | gshA | +1.0 | 6.0 | glutamate--cysteine ligase (NCBI) | compare |
| b2846 | yqeH | +1.0 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0882 | clpA | +1.0 | 8.8 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b4603 | rseX | +1.0 | 1.2 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b2571 | rseB | +1.0 | 6.1 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b0240 | crl | +1.0 | 8.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2531 | iscR | +1.0 | 2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0925 | ycbB | +0.9 | 7.8 | predicted carboxypeptidase (NCBI) | compare |
| b1823 | cspC | +0.9 | 2.8 | stress protein, member of the CspA-family (NCBI) | compare |
| b0955 | ycbZ | +0.9 | 7.2 | predicted peptidase (NCBI) | compare |
| b1936 | intG | +0.9 | 1.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b3628 | rfaB | +0.9 | 7.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2829 | ptsP | +0.9 | 8.3 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3162 | deaD | +0.9 | 5.1 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b1382 | ynbE | +0.9 | 2.6 | predicted lipoprotein (NCBI) | compare |
| b0382 | yaiB | +0.9 | 6.9 | hypothetical protein (NCBI) | compare |
| b1150 | ymfR | +0.9 | 1.5 | e14 prophage; predicted protein (NCBI) | compare |
| b2217 | rcsB | +0.8 | 5.7 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b2512 | yfgL | +0.8 | 5.1 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3206 | npr | +0.8 | 4.5 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1182 | hlyE | +0.8 | 0.8 | hemolysin E (VIMSS) | compare |
| b1269 | rluB | +0.8 | 3.3 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b4097 | phnK | +0.8 | 2.9 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1642 | slyA | +0.8 | 3.2 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b0178 | hlpA | +0.8 | 4.8 | periplasmic chaperone (NCBI) | compare |
| b4704 | arrS | +0.8 | 0.4 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b4071 | nrfB | +0.8 | 1.8 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1179 | ycgL | +0.8 | 2.3 | conserved protein (NCBI) | compare |
| b3764 | yifE | +0.8 | 4.7 | hypothetical protein (NCBI) | compare |
| b4066 | yjcF | +0.8 | 0.6 | hypothetical protein (NCBI) | compare |
| b3871 | bipA | +0.7 | 6.3 | GTP-binding protein (NCBI) | compare |
| b1233 | ychJ | +0.7 | 3.4 | hypothetical protein (NCBI) | compare |
| b0759 | galE | +0.7 | 4.6 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b3672 | ivbL | +0.7 | 1.7 | ilvB operon leader peptide (NCBI) | compare |
| b0754 | aroG | +0.7 | 4.9 | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | compare |
| b1743 | spy | +0.7 | 1.6 | envelope stress induced periplasmic protein (NCBI) | compare |
| b4585 | sroB | +0.7 | 1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b3753 | rbsR | +0.7 | 5.7 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b0082 | mraW | +0.7 | 4.0 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3816 | corA | +0.7 | 5.3 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b1381 | ydbH | +0.7 | 5.5 | hypothetical protein (NCBI) | compare |
| b3199 | yrbK | +0.7 | 1.5 | hypothetical protein (NCBI) | compare |
| b4480 | hdfR | +0.7 | 4.7 | transcriptional regulator HdfR (NCBI) | compare |
| b0535 | fimZ | +0.7 | 3.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3523 | yhjE | +0.7 | 5.3 | predicted transporter (NCBI) | compare |
| b4692 | oweE | +0.7 | 1.4 | no description | compare |
| b2617 | smpA | +0.7 | 3.3 | small membrane protein A (VIMSS) | compare |
| b4133 | cadC | +0.7 | 6.0 | DNA-binding transcriptional activator (NCBI) | compare |
| b1480 | sra | +0.7 | 1.1 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b2749 | ygbE | +0.6 | 4.2 | conserved inner membrane protein (NCBI) | compare |
| b3933 | ftsN | +0.6 | 4.7 | essential cell division protein (NCBI) | compare |
| b3349 | slyD | +0.6 | 4.4 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b4552 | yrhC | +0.6 | 1.0 | no description | compare |
| b1667 | ydhR | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b2007 | yeeX | +0.6 | 2.6 | conserved protein (RefSeq) | compare |
| b1678 | ynhG | +0.6 | 4.1 | hypothetical protein (NCBI) | compare |
| b4410 | ecnA | +0.6 | 1.5 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b1346 | ydaQ | +0.6 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1761 | gdhA | +0.6 | 3.5 | glutamate dehydrogenase (NCBI) | compare |
| b2786 | barA | +0.6 | 5.9 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b1253 | yciA | +0.6 | 1.7 | predicted hydrolase (NCBI) | compare |
| b0131 | panD | +0.6 | 2.5 | aspartate 1-decarboxylase precursor (NCBI) | compare |
| b3261 | fis | +0.6 | 1.5 | DNA-binding protein Fis (NCBI) | compare |
| b3387 | dam | +0.6 | 3.8 | DNA adenine methylase (NCBI) | compare |
| b4293 | fecI | +0.6 | 1.8 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b0503 | ybbB | +0.6 | 1.9 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1333 | uspE | +0.6 | 3.8 | stress-induced protein (NCBI) | compare |
| b1914 | uvrY | +0.6 | 3.6 | response regulator (NCBI) | compare |
| b1628 | rsxB | +0.6 | 1.9 | electron transport complex protein RnfB (NCBI) | compare |
| b4679 | yohP | +0.6 | 2.6 | expressed protein (RefSeq) | compare |
| b1824 | yobF | +0.6 | 1.8 | hypothetical protein (NCBI) | compare |
| b0998 | torD | +0.5 | 1.2 | chaperone protein TorD (NCBI) | compare |
| b0440 | hupB | +0.5 | 3.4 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b2136 | yohD | +0.5 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b0234 | yafP | +0.5 | 1.5 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1725 | yniA | +0.5 | 1.9 | predicted phosphotransferase/kinase (NCBI) | compare |
| b2944 | sprT | +0.5 | 1.9 | hypothetical protein (NCBI) | compare |
| b4443 | gcvB | +0.5 | 0.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b0388 | aroL | +0.5 | 3.8 | shikimate kinase II (NCBI) | compare |
| b1831 | proQ | +0.5 | 2.9 | putative solute/DNA competence effector (NCBI) | compare |
| b2363 | yfdT | +0.5 | 2.0 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b1627 | rsxA | +0.5 | 2.5 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b1591 | b1591 | +0.5 | 1.8 | putative oxidoreductase component (VIMSS) | compare |
| b0851 | nfsA | +0.5 | 1.9 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b1187 | fadR | +0.5 | 3.2 | fatty acid metabolism regulator (NCBI) | compare |
| b1422 | ydcI | +0.5 | 3.0 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b2314 | dedD | +0.5 | 2.0 | putative lipoprotein (VIMSS) | compare |
| b4450 | arcZ | +0.5 | 2.9 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3755 | yieP | +0.5 | 3.2 | predicted transcriptional regulator (NCBI) | compare |
| b0991 | ymcE | +0.5 | 2.4 | cold shock gene (NCBI) | compare |
| b0661 | miaB | +0.5 | 4.4 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b3234 | degQ | +0.5 | 4.0 | serine endoprotease, periplasmic (NCBI) | compare |
| b0819 | ybiS | +0.5 | 3.4 | hypothetical protein (NCBI) | compare |
| b3043 | ygiL | +0.5 | 2.8 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0864 | artP | +0.5 | 2.5 | arginine transporter subunit (NCBI) | compare |
| b2811 | ygdK | +0.5 | 2.1 | predicted Fe-S metabolism protein (NCBI) | compare |
| b3495 | uspA | +0.5 | 4.1 | universal stress global response regulator (NCBI) | compare |
| b0483 | ybaQ | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2042 | galF | +0.5 | 3.6 | predicted subunit with GalU (NCBI) | compare |
| b1891 | flhC | +0.5 | 2.4 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b1729 | ydjN | +0.5 | 2.3 | predicted transporter (NCBI) | compare |
| b3459 | yhhK | +0.5 | 2.7 | hypothetical protein (NCBI) | compare |
| b1492 | gadC | +0.5 | 3.3 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b0436 | tig | +0.5 | 2.4 | trigger factor (NCBI) | compare |
| b3512 | GadE | +0.5 | 2.3 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1448 | yncA | +0.5 | 1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3858 | yihD | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b1217 | chaB | +0.5 | 1.0 | cation transport regulator (NCBI) | compare |
| b1218 | chaC | +0.5 | 2.9 | regulatory protein for cation transport (RefSeq) | compare |
| b0432 | cyoA | +0.4 | 3.5 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b0505 | allA | +0.4 | 1.3 | ureidoglycolate hydrolase (NCBI) | compare |
| b1992 | cobS | +0.4 | 1.2 | cobalamin synthase (NCBI) | compare |
| b2643 | yfjX | +0.4 | 1.3 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b4694 | yagP | +0.4 | 1.6 | no description | compare |
| b2330 | yfcB | +0.4 | 1.1 | putative adenine-specific methylase (VIMSS) | compare |
| b3627 | rfaI | +0.4 | 3.1 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b2768 | ygcP | +0.4 | 2.0 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b2435 | amiA | +0.4 | 2.1 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b1186 | nhaB | +0.4 | 3.2 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b3014 | yqhH | +0.4 | 2.7 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3961 | oxyR | +0.4 | 3.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2659 | b2659 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3213 | gltD | +0.4 | 3.6 | glutamate synthase, 4Fe-4S protein, small subunit (NCBI) | compare |
| b2506 | yfgI | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1679 | sufE | +0.4 | 2.5 | cysteine desufuration protein SufE (NCBI) | compare |
| b2448 | yffQ | +0.4 | 1.2 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4590 | ybfK | +0.4 | 0.6 | hypothetical protein (RefSeq) | compare |
| b1942 | fliJ | +0.4 | 0.8 | flagellar biosynthesis chaperone (NCBI) | compare |
| b1243 | oppA | +0.4 | 3.3 | oligopeptide transporter subunit (NCBI) | compare |
| b4458 | oxyS | +0.4 | 1.1 | global regulatory RNA (NCBI) | compare |
| b1164 | ycgZ | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b4227 | ytfQ | +0.4 | 2.1 | predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b2698 | recX | +0.4 | 1.5 | RecA regulator RecX (NCBI) | compare |
| b1556 | b1556 | +0.4 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2229 | b2229 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1630 | rsxD | +0.4 | 2.0 | electron transport complex protein RnfD (NCBI) | compare |
| b2436 | hemF | +0.4 | 2.3 | coproporphyrinogen III oxidase (NCBI) | compare |
| b1246 | oppD | +0.4 | 2.8 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b3341 | rpsG | +0.4 | 0.9 | 30S ribosomal protein S7 (NCBI) | compare |
| b2644 | yfjY | +0.4 | 1.2 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b1613 | manA | +0.4 | 0.8 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b4426 | isrA | +0.4 | 1.5 | unknown RNA (NCBI) | compare |
| b4255 | yjgD | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2286 | nuoC | +0.4 | 2.2 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b1822 | rrmA | +0.4 | 1.2 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b1648 | b1648 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1625 | ydgT | +0.4 | 2.2 | predicted regulator (NCBI) | compare |
| b2093 | gatB | +0.4 | 1.6 | galactitol-specific enzyme IIB component of PTS (NCBI) | compare |
| b3009 | yghB | +0.4 | 2.2 | conserved inner membrane protein (NCBI) | compare |
| b3466 | yhhL | +0.4 | 2.4 | conserved inner membrane protein (NCBI) | compare |
| b1244 | oppB | +0.4 | 2.8 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b1446 | ydcY | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b1818 | manY | +0.4 | 1.2 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b1347 | ydaC | +0.4 | 0.2 | Rac prophage; predicted protein (NCBI) | compare |
| b3194 | yrbE | +0.4 | 2.8 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2006 | yeeW | +0.4 | 1.9 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b1583 | ynfB | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0868 | b0868 | +0.4 | 3.1 | putative nucleotide di-P-sugar epimerase or dehydratase (VIMSS) | compare |
| b4701 | sokX | +0.4 | 0.7 | sok-related sRNA, function unknown (RefSeq) | compare |
| b4594 | ymgJ | +0.4 | 1.1 | hypothetical protein (RefSeq) | compare |
| b2004 | yeeU | +0.4 | 1.3 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b4595 | yciY | +0.4 | 1.2 | hypothetical protein (RefSeq) | compare |
| b3643 | rph | +0.4 | 2.0 | ribonuclease PH (NCBI) | compare |
| b4402 | yjjY | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b0425 | panE | +0.4 | 3.2 | 2-dehydropantoate 2-reductase (NCBI) | compare |
| b3718 | yieK | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1557 | cspB | +0.4 | 1.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b1949 | fliQ | +0.4 | 1.7 | flagellar biosynthesis protein Q (NCBI) | compare |
| b3354 | yheU | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1689 | b1689 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0831 | yliC | +0.4 | 2.4 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1330 | ynaI | +0.4 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b4215 | ytfI | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b1132 | hflD | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1869 | yecN | +0.3 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1045 | ymdB | +0.3 | 1.9 | hypothetical protein (NCBI) | compare |
| b2667 | ygaV | +0.3 | 2.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0862 | artQ | +0.3 | 1.7 | arginine transporter subunit (NCBI) | compare |
| b3102 | yqjG | +0.3 | 1.8 | predicted S-transferase (NCBI) | compare |
| b3516 | gadX | +0.3 | 2.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |