| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +3.1 | 22.7 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b2741 | rpoS | +2.4 | 20.7 | RNA polymerase sigma factor (NCBI) | compare |
| b4402 | yjjY | +2.2 | 5.9 | hypothetical protein (NCBI) | compare |
| b1954 | dsrA | +2.0 | 8.3 | regulatory antisense RNA (NCBI) | compare |
| b2217 | rcsB | +1.9 | 15.7 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b0014 | dnaK | +1.7 | 7.1 | molecular chaperone DnaK (NCBI) | compare |
| b1823 | cspC | +1.6 | 4.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b3229 | sspA | +1.5 | 8.3 | stringent starvation protein A (NCBI) | compare |
| b1642 | slyA | +1.5 | 6.4 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2659 | b2659 | +1.1 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b4133 | cadC | +1.1 | 10.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b4593 | ymgI | +1.1 | 1.3 | hypothetical protein (RefSeq) | compare |
| b2531 | iscR | +1.0 | 3.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3443 | yrhA | +0.9 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3753 | rbsR | +0.9 | 8.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b3672 | ivbL | +0.9 | 2.9 | ilvB operon leader peptide (NCBI) | compare |
| b1765 | ydjA | +0.9 | 1.3 | predicted oxidoreductase (NCBI) | compare |
| b3390 | aroK | +0.9 | 2.1 | shikimate kinase I (NCBI) | compare |
| b1730 | ydjO | +0.9 | 1.6 | predicted protein (RefSeq) | compare |
| b0240 | crl | +0.9 | 6.1 | DNA-binding transcriptional regulator (NCBI) | compare |
| b3516 | gadX | +0.8 | 7.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4546 | ypeB | +0.8 | 2.0 | hypothetical protein (NCBI) | compare |
| b3512 | GadE | +0.8 | 3.9 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1824 | yobF | +0.8 | 3.5 | hypothetical protein (NCBI) | compare |
| b4679 | yohP | +0.8 | 3.1 | expressed protein (RefSeq) | compare |
| b3002 | yqhA | +0.8 | 2.2 | hypothetical protein (NCBI) | compare |
| b4215 | ytfI | +0.8 | 1.9 | hypothetical protein (NCBI) | compare |
| b3146 | yraL | +0.8 | 6.1 | predicted methyltransferase (NCBI) | compare |
| b4704 | arrS | +0.8 | 0.4 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b4071 | nrfB | +0.8 | 1.8 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1936 | intG | +0.8 | 1.1 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1231 | tyrT | +0.8 | 1.5 | tRNA-Tyr (NCBI) | compare |
| b1247 | oppF | +0.7 | 5.7 | oligopeptide transporter subunit (NCBI) | compare |
| b3397 | nudE | +0.7 | 6.0 | ADP-ribose diphosphatase (NCBI) | compare |
| b4246 | pyrL | +0.7 | 1.4 | pyrBI operon leader peptide (NCBI) | compare |
| b1658 | purR | +0.7 | 5.7 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b4585 | sroB | +0.7 | 1.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b2934 | cmtB | +0.7 | 0.9 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1357 | ydaS | +0.7 | 2.7 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3163 | nlpI | +0.7 | 2.4 | hypothetical protein (NCBI) | compare |
| b3495 | uspA | +0.7 | 6.1 | universal stress global response regulator (NCBI) | compare |
| b1233 | ychJ | +0.7 | 2.5 | hypothetical protein (NCBI) | compare |
| b4545 | ypdJ | +0.6 | 1.4 | no description | compare |
| b2637 | yfjT | +0.6 | 3.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b0082 | mraW | +0.6 | 3.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1244 | oppB | +0.6 | 5.0 | oligopeptide permease ABC transporter membrane protein (NCBI) | compare |
| b2189 | proL | +0.6 | 2.1 | tRNA-Pro (NCBI) | compare |
| b1492 | gadC | +0.6 | 4.3 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b1160 | elbA | +0.6 | 0.8 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +0.6 | 5.8 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2502 | ppx | +0.6 | 4.9 | exopolyphosphatase (NCBI) | compare |
| b3755 | yieP | +0.6 | 3.4 | predicted transcriptional regulator (NCBI) | compare |
| b3206 | npr | +0.6 | 3.0 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4603 | rseX | +0.6 | 0.7 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b4592 | yccB | +0.6 | 1.4 | hypothetical protein (RefSeq) | compare |
| b2181 | yejG | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b2510 | b2510 | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1245 | oppC | +0.5 | 3.6 | oligopeptide transporter subunit (NCBI) | compare |
| b4520 | ymgF | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b1953 | b1953 | +0.5 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b2229 | b2229 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0388 | aroL | +0.5 | 2.8 | shikimate kinase II (NCBI) | compare |
| b1733 | chbG | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b4552 | yrhC | +0.5 | 0.8 | no description | compare |
| b2668 | ygaP | +0.5 | 3.9 | predicted inner membrane protein with hydrolase activity (NCBI) | compare |
| b1257 | yciE | +0.5 | 0.3 | hypothetical protein (NCBI) | compare |
| b1848 | yebG | +0.5 | 1.3 | conserved protein regulated by LexA (NCBI) | compare |
| b0661 | miaB | +0.5 | 4.3 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b1583 | ynfB | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b0782 | moaB | +0.5 | 2.0 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b1246 | oppD | +0.5 | 3.6 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b3889 | yiiE | +0.5 | 1.7 | predicted transcriptional regulator (RefSeq) | compare |
| b1591 | b1591 | +0.5 | 1.5 | putative oxidoreductase component (VIMSS) | compare |
| b0955 | ycbZ | +0.5 | 3.7 | predicted peptidase (NCBI) | compare |
| b0696 | kdpC | +0.5 | 2.0 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1743 | spy | +0.5 | 1.3 | envelope stress induced periplasmic protein (NCBI) | compare |
| b1607 | ydgC | +0.5 | 1.2 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b4532 | yncN | +0.5 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b1920 | fliY | +0.5 | 2.0 | cystine transporter subunit (NCBI) | compare |
| b0866 | ybjQ | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b1448 | yncA | +0.5 | 1.9 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2960 | yggH | +0.5 | 3.5 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b2007 | yeeX | +0.5 | 0.7 | conserved protein (RefSeq) | compare |
| b0303 | ykgI | +0.5 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b4650 | yibS | +0.5 | 1.7 | no description | compare |
| b2006 | yeeW | +0.4 | 1.9 | CP4-44 prophage; predicted protein (RefSeq) | compare |
| b3429 | glgA | +0.4 | 3.7 | glycogen synthase (NCBI) | compare |
| b0982 | yccY | +0.4 | 2.8 | putative phosphatase (VIMSS) | compare |
| b1499 | ydeO | +0.4 | 0.4 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b0660 | ybeZ | +0.4 | 2.5 | predicted protein with nucleoside triphosphate hydrolase domain (RefSeq) | compare |
| b0774 | bioA | +0.4 | 2.6 | adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) | compare |
| b1001 | yccE | +0.4 | 0.3 | hypothetical protein (NCBI) | compare |
| b4017 | arpA | +0.4 | 2.2 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b1062 | pyrC | +0.4 | 2.1 | dihydroorotase (NCBI) | compare |
| b2504 | yfgG | +0.4 | 1.1 | Negative regulator of nickel and cobalt uptake (YfgG) (from data) | compare |
| b1038 | csgF | +0.4 | 1.9 | predicted transport protein (NCBI) | compare |
| b1243 | oppA | +0.4 | 3.3 | oligopeptide transporter subunit (NCBI) | compare |
| b1550 | b1550 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1725 | yniA | +0.4 | 1.8 | predicted phosphotransferase/kinase (NCBI) | compare |
| b4050 | yjbO | +0.4 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b4045 | yjbJ | +0.4 | 1.3 | predicted stress response protein (NCBI) | compare |
| b3779 | gpp | +0.4 | 3.9 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b1919 | yedO | +0.4 | 1.5 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b0617 | citD | +0.4 | 1.5 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b0792 | ybhR | +0.4 | 2.6 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2448 | yffQ | +0.4 | 1.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b3293 | yhdN | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b0965 | b0965 | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2742 | nlpD | +0.4 | 2.1 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1627 | rsxA | +0.4 | 1.9 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2004 | yeeU | +0.4 | 1.3 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b2236 | yfaE | +0.4 | 2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b4279 | yjhB | +0.4 | 0.2 | putative transport protein (VIMSS) | compare |
| b1040 | csgD | +0.4 | 1.0 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b0436 | tig | +0.4 | 2.7 | trigger factor (NCBI) | compare |
| b2814 | metZ | +0.4 | 1.1 | tRNA-Met (NCBI) | compare |
| b1671 | ydhX | +0.4 | 1.8 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b2666 | yqaE | +0.4 | 2.3 | predicted membrane protein (NCBI) | compare |
| b1461 | ydcE | +0.4 | 1.7 | 4-oxalocrotonate tautomerase (NCBI) | compare |
| b3106 | yhaK | +0.4 | 1.7 | predicted pirin-related protein (NCBI) | compare |
| b3816 | corA | +0.4 | 3.2 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b2635 | ypjK | +0.4 | 1.5 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2936 | yggG | +0.4 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1648 | b1648 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4064 | yjcD | +0.4 | 3.3 | predicted permease (NCBI) | compare |
| b1344 | ydaO | +0.4 | 1.1 | predicted C32 tRNA thiolase (NCBI) | compare |
| b4529 | ydbJ | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b4692 | oweE | +0.4 | 1.7 | no description | compare |
| b4450 | arcZ | +0.4 | 1.4 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0623 | cspE | +0.4 | 1.3 | cold shock protein E (NCBI) | compare |
| b0104 | guaC | +0.4 | 3.0 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b1085 | b1085 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2433 | b2433 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0503 | ybbB | +0.4 | 1.2 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1242 | ychE | +0.4 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b2424 | cysU | +0.4 | 1.5 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b2506 | yfgI | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b4214 | cysQ | +0.4 | 2.9 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b3228 | sspB | +0.4 | 2.3 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b3292 | zntR | +0.4 | 2.0 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b1576 | ydfD | +0.4 | 0.2 | Qin prophage; predicted protein (NCBI) | compare |
| b4095 | phnM | +0.4 | 2.4 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1669 | ydhT | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1630 | rsxD | +0.4 | 1.5 | electron transport complex protein RnfD (NCBI) | compare |
| b1263 | trpD | +0.4 | 1.0 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b4453 | ldrD | +0.4 | 1.5 | toxic polypeptide, small (NCBI) | compare |
| b1970 | yedX | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b1336 | ydaH | +0.4 | 2.4 | putative pump protein (transport) (VIMSS) | compare |
| b4577 | sgrS | +0.4 | 1.4 | small antisense RNA (NCBI) | compare |
| b3432 | glgB | +0.4 | 3.2 | glycogen branching enzyme (NCBI) | compare |
| b4406 | yaeP | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b4196 | ulaD | +0.4 | 1.8 | 3-keto-L-gulonate 6-phosphate decarboxylase (NCBI) | compare |
| b4094 | phnN | +0.4 | 1.6 | ribose 1,5-bisphosphokinase (NCBI) | compare |
| b0232 | yafN | +0.4 | 0.3 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2644 | yfjY | +0.3 | 1.2 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b2136 | yohD | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3933 | ftsN | +0.3 | 2.5 | essential cell division protein (NCBI) | compare |
| b2290 | yfbQ | +0.3 | 2.7 | aspartate aminotransferase (NCBI) | compare |
| b3507 | dctR | +0.3 | 3.1 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b1842 | holE | +0.3 | 1.1 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1306 | pspC | +0.3 | 1.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b1251 | yciI | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4049 | dusA | +0.3 | 2.8 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b4701 | sokX | +0.3 | 0.4 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1841 | yobA | +0.3 | 0.8 | hypothetical protein (NCBI) | compare |
| b0301 | ykgB | +0.3 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3455 | livG | +0.3 | 2.0 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b3888 | yiiD | +0.3 | 2.2 | predicted acetyltransferase (NCBI) | compare |
| b4595 | yciY | +0.3 | 1.0 | hypothetical protein (RefSeq) | compare |
| b3676 | yidH | +0.3 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b1831 | proQ | +0.3 | 1.4 | putative solute/DNA competence effector (NCBI) | compare |
| b2665 | ygaU | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b1179 | ycgL | +0.3 | 0.7 | conserved protein (NCBI) | compare |
| b1792 | yeaO | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0423 | thiI | +0.3 | 2.0 | thiamine biosynthesis protein ThiI (NCBI) | compare |
| b2012 | yeeD | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b2479 | gcvR | +0.3 | 1.7 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1853 | yebK | +0.3 | 0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3133 | agaV | +0.3 | 1.1 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b1822 | rrmA | +0.3 | 1.1 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b0755 | gpmA | +0.3 | 1.8 | phosphoglyceromutase (NCBI) | compare |
| b4676 | yoaK | +0.3 | 0.3 | expressed protein (RefSeq) | compare |
| b2009 | sbmC | +0.3 | 1.5 | DNA gyrase inhibitor (NCBI) | compare |
| b1582 | ynfA | +0.3 | 1.4 | hypothetical protein (NCBI) | compare |
| b3043 | ygiL | +0.3 | 1.7 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4594 | ymgJ | +0.3 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1348 | lar | +0.3 | 1.1 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b2071 | yegJ | +0.3 | 1.0 | hypothetical protein (NCBI) | compare |
| b0953 | rmf | +0.3 | 1.1 | ribosome modulation factor (NCBI) | compare |
| b1147 | ymfL | +0.3 | 1.1 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1685 | ydiH | +0.3 | 0.8 | predicted protein (RefSeq) | compare |
| b0644 | ybeQ | +0.3 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2540 | hcaC | +0.3 | 1.1 | 3-phenylpropionate dioxygenase, predicted ferredoxin subunit (NCBI) | compare |
| b3207 | yrbL | +0.3 | 2.0 | hypothetical protein (NCBI) | compare |
| b1300 | puuC | +0.3 | 2.0 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | compare |
| b0798 | ybiA | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b2199 | ccmC | +0.3 | 1.2 | heme exporter subunit (NCBI) | compare |
| b1548 | nohA | +0.3 | 0.6 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b3503 | arsC | +0.3 | 1.8 | arsenate reductase (NCBI) | compare |
| b1361 | ydaW | +0.3 | 0.2 | orf, hypothetical protein (VIMSS) | compare |